Clone HL02936 Report

Search the DGRC for HL02936

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:29
Well:36
Vector:pBS SK-
Associated Gene/TranscriptCG1847-RA
Protein status:HL02936.pep: gold
Preliminary Size:1806
Sequenced Size:1755

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1847 2001-01-01 Release 2 assignment
CG1847 2001-11-09 Blastp of sequenced clone
CG1847 2003-01-01 Sim4 clustering to Release 3
CG1847 2008-04-29 Release 5.5 accounting
CG1847 2008-08-15 Release 5.9 accounting
CG1847 2008-12-18 5.12 accounting

Clone Sequence Records

HL02936.complete Sequence

1755 bp (1755 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070867

> HL02936.complete
GTATCGAAAGGAAATTGTGTTGATTCCAAATAAATCCGATTCCAGCGGAG
ATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCATACGAAAGGAGATCCT
CAATCCGGGAAACGCCTACATCGAGCTAACCCCGGGCACCAGGGTGAAGT
TCCACTTTCAAACGCGGAGGGCCGGCGACAGTCGCATCATCGATGATAGC
CGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGGGGAAGAAGTTTAAGCT
AGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCCCTTAACGAAGTGGCCA
AGTTCACGGTACATAAGTCGCTCTGCGCTCAATATCCTTTTATATCCAAG
ACCCTGCGGGACATTGGCAAGAAACCGGAGGAGCGACGTCACTGCTGCGG
AATGACATTGCAGAACGAGGGCATTGGGTACACCGACCTGGATGAGCTGC
TGCAAAATCCTTCCGATCTGGAGTTCATCATTGAACTGTTCTCCATTGAG
CTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGATGTCCGACGACGAAAA
GATGCTGGCCACCAGTACGCTGCGCGAACGGGGCAACAACTTCTATAAGG
CCAGTCGGTTCACAGAGGCGGAGACCTGCTACCGCGAGGCTGTCGGAATT
GTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACGACGAGGAGTGGCAGGA
GCTGGCGGCCATCAAGACACCGCTGTTGTTGAACTACGCGCAATGTCGGT
TGATCGCCGGCGACTTCTACGCTGTGATCGAGCACTGCAACGAGGTGCTC
ACCCTGGATCCGCGCAATGTCAAGGCACTTTTTCGTCGGGCCAAGGCCCA
TGCGGGTGCCTGGAATCCAGCACAGGCACGTCGCGACTTCCTCGACGCCT
TGGCCTTGGACGCCAGCCTCAAGTCGACCGTGTCTAAGGAGCTCAAGTCC
ATCGAGGATCAGCAGCAGGCACGTAACGTCCAGGATCGCATTCACATGCA
GAAGCTCTTCTAGAACATAAGTTGCGTCAACGTGCTGCTCATGCTGCTTG
TCTATTGGAGCAGCTACCTGCAGCGCTAGCAGTACTTGTCACTACCTTCT
TTTCTTTCGCTGGCCGTCAGCTTCGCTCATGGTCTCGTGCTGCTCTGCTC
GATGGCGAACCTATTCCTCTGCTGCTGGACCCTCAAGAAGCTGCTGCGAG
CAATGCAGGGGCTCAGCTGGTGATTTTGCGACAACATAACACAATCAACC
AACTCGGTACCATACCACCTCATTTTGTGAGAGCTGCATTTTGGGGCACT
ATATGCCCATACTCATCCTCCGCCTCGATTCACATTCAACGGTGTAGGCT
AAAGGGTCTAAATATAATGTAAATGTACCATCCAGATGCTTGTGTGGAAT
TGTAATCGTGTGTATATGGAATGAAAAATGTTGTTTGCGTAGCGTTACCA
AAAATAGTAATCAAATGTTTCACATTTGTTGTCCATAGTCGTATATGTAT
GTTTGTATTGTATTGTATATCCCTATATGCGATATTTACTCGTAGCTAGA
ATCTACTCTAAATCTAGACAAATTGTGTAAGAAGTAATAAATGTGCTTTT
GACCGCTGTCTAATTGTTAATTGTAGTTGAAGACTTTATTGTTTGTATAC
ATATATGCGGCAAGCATACGTAATAATATGCATTTGCATAAGAGAGAATA
CAGTGTATAAAATAAATATCCAAACCTTTAAATGGACAAAAAAAAAAAAA
AAAAA

HL02936.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-RA 1851 CG1847-RA 47..1786 1..1740 8700 100 Plus
CG1847-RB 1786 CG1847-RB 185..1782 143..1740 7990 100 Plus
CG1847.a 1784 CG1847.a 183..1780 143..1740 7990 100 Plus
CG1847-RB 1786 CG1847-RB 10..152 1..143 715 100 Plus
CG1847.a 1784 CG1847.a 10..152 1..143 715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11760868..11762285 320..1737 7030 99.7 Plus
chrX 22417052 chrX 11760610..11760787 143..320 875 99.4 Plus
chrX 22417052 chrX 11760326..11760472 1..147 735 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11869739..11871159 320..1740 7105 100 Plus
X 23542271 X 11869481..11869658 143..320 890 100 Plus
X 23542271 X 11869197..11869343 1..147 735 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11877837..11879257 320..1740 7105 100 Plus
X 23527363 X 11877579..11877756 143..320 890 100 Plus
X 23527363 X 11877295..11877441 1..147 735 100 Plus
Blast to na_te.dros performed 2019-03-16 23:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 688..851 1520..1356 120 59.3 Minus

HL02936.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:30:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11760326..11760468 1..143 100 -> Plus
chrX 11760611..11760787 144..320 99 -> Plus
chrX 11760869..11762285 321..1737 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 1..963 51..1013 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:33 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 1..963 51..1013 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:02 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RC 1..1029 51..1079 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:12 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 1..963 51..1013 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RC 1..1029 51..1079 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:09 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 10..1746 1..1737 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:33 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 10..1746 1..1737 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:02 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 28..1764 1..1737 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:12 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 10..1746 1..1737 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
CG1847-RA 28..1764 1..1737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
X 11869482..11869658 144..320 100 -> Plus
X 11869197..11869339 1..143 100 -> Plus
X 11869740..11871156 321..1737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
X 11869482..11869658 144..320 100 -> Plus
X 11869197..11869339 1..143 100 -> Plus
X 11869740..11871156 321..1737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:07 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
X 11869482..11869658 144..320 100 -> Plus
X 11869197..11869339 1..143 100 -> Plus
X 11869740..11871156 321..1737 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:02 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11763230..11763372 1..143 100 -> Plus
arm_X 11763515..11763691 144..320 100 -> Plus
arm_X 11763773..11765189 321..1737 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:25 Download gff for HL02936.complete
Subject Subject Range Query Range Percent Splice Strand
X 11877838..11879254 321..1737 100   Plus
X 11877580..11877756 144..320 100 -> Plus
X 11877295..11877437 1..143 100 -> Plus

HL02936.pep Sequence

Translation from 50 to 1012

> HL02936.pep
MQSRSKSDMKPIRKEILNPGNAYIELTPGTRVKFHFQTRRAGDSRIIDDS
RKMEKPMELVLGKKFKLEVWELIVQQMSLNEVAKFTVHKSLCAQYPFISK
TLRDIGKKPEERRHCCGMTLQNEGIGYTDLDELLQNPSDLEFIIELFSIE
LPEQYEKERWQMSDDEKMLATSTLRERGNNFYKASRFTEAETCYREAVGI
VEQLMLKEKPHDEEWQELAAIKTPLLLNYAQCRLIAGDFYAVIEHCNEVL
TLDPRNVKALFRRAKAHAGAWNPAQARRDFLDALALDASLKSTVSKELKS
IEDQQQARNVQDRIHMQKLF*

HL02936.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21573-PA 318 GF21573-PA 4..318 6..320 1497 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18449-PA 320 GG18449-PA 1..320 1..320 1696 98.1 Plus
Dere\GG15394-PA 383 GG15394-PA 94..382 58..320 161 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11919-PA 322 GH11919-PA 9..322 7..320 1434 83.4 Plus
Dgri\GH11297-PA 441 GH11297-PA 148..371 27..295 160 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-PC 342 CG1847-PC 1..320 1..320 1658 100 Plus
CG1847-PA 320 CG1847-PA 1..320 1..320 1658 100 Plus
Fkbp59-PB 439 CG4535-PB 239..389 158..315 174 25.9 Plus
Fkbp59-PA 439 CG4535-PA 239..389 158..315 174 25.9 Plus
CG8336-PD 383 CG8336-PD 148..382 98..320 153 25.1 Plus
CG8336-PC 383 CG8336-PC 148..382 98..320 153 25.1 Plus
CG8336-PA 383 CG8336-PA 148..382 98..320 153 25.1 Plus
CG8336-PB 383 CG8336-PB 148..382 98..320 153 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14657-PA 322 GI14657-PA 4..322 2..320 1488 84.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20154-PA 320 GL20154-PA 1..320 1..320 1542 88.1 Plus
Dper\GL12709-PA 384 GL12709-PA 148..383 98..320 153 26.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14946-PA 320 GA14946-PA 1..320 1..320 1543 88.4 Plus
Dpse\GA20999-PA 384 GA20999-PA 148..383 98..320 151 26.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13115-PA 320 GM13115-PA 1..320 1..320 1706 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17053-PA 320 GD17053-PA 1..320 1..320 1715 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19310-PA 322 GJ19310-PA 4..322 2..320 1494 85 Plus
Dvir\GJ17544-PA 441 GJ17544-PA 133..371 12..295 163 22.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25427-PA 320 GK25427-PA 1..320 1..320 1484 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15671-PA 320 GE15671-PA 1..320 1..320 1706 98.8 Plus
Dyak\GE20859-PA 383 GE20859-PA 94..382 58..320 153 24.7 Plus

HL02936.hyp Sequence

Translation from 50 to 1012

> HL02936.hyp
MQSRSKSDMKPIRKEILNPGNAYIELTPGTRVKFHFQTRRAGDSRIIDDS
RKMEKPMELVLGKKFKLEVWELIVQQMSLNEVAKFTVHKSLCAQYPFISK
TLRDIGKKPEERRHCCGMTLQNEGIGYTDLDELLQNPSDLEFIIELFSIE
LPEQYEKERWQMSDDEKMLATSTLRERGNNFYKASRFTEAETCYREAVGI
VEQLMLKEKPHDEEWQELAAIKTPLLLNYAQCRLIAGDFYAVIEHCNEVL
TLDPRNVKALFRRAKAHAGAWNPAQARRDFLDALALDASLKSTVSKELKS
IEDQQQARNVQDRIHMQKLF*

HL02936.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1847-PA 320 CG1847-PA 1..320 1..320 1658 100 Plus
CG1847-PC 342 CG1847-PC 1..320 1..320 1658 100 Plus
FKBP59-PB 439 CG4535-PB 239..389 158..315 174 25.9 Plus
FKBP59-PA 439 CG4535-PA 239..389 158..315 174 25.9 Plus
CG8336-PD 383 CG8336-PD 148..382 98..320 153 25.1 Plus