Clone HL03025 Report

Search the DGRC for HL03025

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:30
Well:25
Vector:pBS SK-
Associated Gene/TranscriptCG9368-RC
Protein status:HL03025.pep: wuzgold
Preliminary Size:2594
Sequenced Size:2421

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9368 2001-01-01 Release 2 assignment
CG9368 2001-11-09 Blastp of sequenced clone
CG9368 2008-04-29 Release 5.5 accounting
CG9368 2008-08-15 Release 5.9 accounting
CG9368 2008-12-18 5.12 accounting

Clone Sequence Records

HL03025.complete Sequence

2421 bp (2421 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070868

> HL03025.complete
CAAAGAGCTCTGCTCAGCACTCCTTGTAGATACCCATCGCAGGACAAAGG
CAAAGCTCGAAACGCTTCTGGCAGCATTTTCAAAGGATAAAAAGGAATTC
TCACAAAAACCCAGGAAAGATGCATGCCAGATTTGCGGATCCCGAGCCAG
CGTCTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGG
ATTGAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGC
GCTCGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAG
TTGAGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTAT
ACGCAGTGTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTAT
TGCTTTTCCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCC
GCTGAATAGACACTTGTGCACAAATCCTTTTCTTAGTCTTGCTTAAGTAT
TTTTGTATCGATGACTTTCGTGGCAATGAACTCGCTTGACACCTAAGAGT
GCCTAGGCTAAAAGTTGGTGGATGAGGTCTAAATCTCAAATATTGCAAAT
ATTTAGGAAAGTATAATCTTCGTGCTGAAATTAAGAGAACTGTCGCGTAA
TGTTGTAACTTGTTTGATAAAAGTGGGCTGACCTAACTAACTGATGACAG
GGCGACCGTTGTGGGCCTCCTCCACGGTTGTTAACAGATGGCAATTAAAA
CTGAGGAAAGCATATAATTTAGAATATATAAACGCATTCGCACGCCATTT
TCACCCATTTTCCAAAAAACCCAGCCAGCTCGATTGCATGACCATATTTT
GTTGCACTTAACTTGTATTTTGCGTATCACTGATCTTTATTTCCGTATTT
TTGTACTCTCTGCGCCTCGCATGCACTAACCTCTCAGGTTTCGCCATACC
AGATTTTAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGC
GGATCTTCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGGCC
ACGACGCGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGG
AGGTGGTGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGA
ATGAGCCGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGC
AAGAAAAAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCG
ACTGATGGACTAAGCTAGCTATAATGGACAATGGTTGTCCATGCAATGGG
AAAACATAATCAAAATTACCACCAACCCCTTCCTGAACAATGAACTCTTA
CTCAGCAATCGTCTACTGTCATCTTACCACCTTAATGGATCCTGTCCAGA
AGCATTTTCTTCGCTCAAACGTCTTAGGCACAAACCAAATTCTACGTCTT
CCCCTTGAAGACCACCAAGTTTATGGTGTAAGCCCTGCAAAGGAATCTTA
AAATCGCATAGAACAGGGCTGATGGAAAAGCTTTAGCTCTCTACTATATT
GTTTGATATACCCAAATGTGATCCCAGATCGTAATGTTAACGAAAACTCA
ACTCGAAGCACAAGCAACTCTTCTAGGCTAGTTATGAAAGGAGAAAACCC
CTATATACGACATTTGTATACACTCTCCAGCTCTCAGACATTATTTGGTC
CCCACGCACAACACAATCAACGGCATTACACAATCCCAGTGGAATCGACG
AGGGTTTGCCCCGAATCTCCACCTAATTATAACTACGATATATCAAATTA
TATACCTAACTATATGTGTATGTGTATGACTATAGTTGTCTACGGAACCA
CCAACCTATTTAGATGTGTGTGTGTAGCAGTTAAAAGTATTTCCAAACCA
AACCAAAGCAGCTAACAACAAACGGTTCAATATACAAGCATTAATGTGTA
CTGATTTTATATACAATGTACTAACTACTATATATACGTGTGAATGTCAT
TAGACTCTTAGTTGTTTACACAGGTTTCCTCGAACATCCTCATCAAATTC
ATCAACTAATCCGCACACACGCTCTAATCGGATATATTTTTGTGAGACCC
TTTTTGGAGAGATCTACATACATATATAAAGACACTACTCCTATACCGAA
ACCGAAATTTAAGATATCGATTACTCTCGATTACAGAGAACTTTGTACGC
AGATTTGCAAGGCAACCATTTTGTATAAGATTTGCATTTATTTTGTAACC
TCTTGAATGCAAAGATCTCCCTAAGTTTGAATGCATTGCTAAGCCAATTG
GATGTTTATCGATTACAAAATGTATAAGTATGCGTTATGCAAACATAAAA
CCGTTGTATTTAGTTAATAATATCAGCAATAAACTATAACATGTTTGAAA
TCAAAAAAAAAAAAAAAAAAA

HL03025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RC 2425 CG9368-RC 24..2425 1..2402 12010 100 Plus
CG9368-RA 1884 CG9368-RA 417..1883 938..2404 7335 100 Plus
CG9368-RB 1869 CG9368-RB 417..1868 953..2404 7260 100 Plus
CG9368-RA 1884 CG9368-RA 75..418 1..344 1720 100 Plus
CG9368-RB 1869 CG9368-RB 75..416 1..342 1710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19591420..19593501 321..2402 10260 99.5 Plus
chr3L 24539361 chr3L 19591035..19591358 1..324 1620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602039..19604122 321..2404 10420 100 Plus
3L 28110227 3L 19601654..19601977 1..324 1620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19595139..19597222 321..2404 10420 100 Plus
3L 28103327 3L 19594754..19595077 1..324 1620 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:23:46 has no hits.

HL03025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:41 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19591035..19591357 1..323 100 -> Plus
chr3L 19591423..19593501 324..2402 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:09 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..336 124..459 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:24 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..336 124..459 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 01:27:14 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:00 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..336 124..459 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 21:05:08 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:55 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..2402 1..2402 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:23 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..2402 1..2402 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:14 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 22..2423 1..2402 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:00 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RC 1..2402 1..2402 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:08 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RD 22..2423 1..2402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601654..19601976 1..323 100 -> Plus
3L 19602042..19604120 324..2402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601654..19601976 1..323 100 -> Plus
3L 19602042..19604120 324..2402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601654..19601976 1..323 100 -> Plus
3L 19602042..19604120 324..2402 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:14 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594754..19595076 1..323 100 -> Plus
arm_3L 19595142..19597220 324..2402 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:14 Download gff for HL03025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19594754..19595076 1..323 100 -> Plus
3L 19595142..19597220 324..2402 100   Plus

HL03025.hyp Sequence

Translation from 123 to 458

> HL03025.hyp
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence HL03025.hyp has no blast hits.

HL03025.pep Sequence

Translation from 123 to 458

> HL03025.pep
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence HL03025.pep has no blast hits.