HL03025.complete Sequence
2421 bp (2421 high quality bases) assembled on 2001-11-09
GenBank Submission: AY070868
> HL03025.complete
CAAAGAGCTCTGCTCAGCACTCCTTGTAGATACCCATCGCAGGACAAAGG
CAAAGCTCGAAACGCTTCTGGCAGCATTTTCAAAGGATAAAAAGGAATTC
TCACAAAAACCCAGGAAAGATGCATGCCAGATTTGCGGATCCCGAGCCAG
CGTCTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGG
ATTGAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGC
GCTCGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAG
TTGAGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTAT
ACGCAGTGTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTAT
TGCTTTTCCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCC
GCTGAATAGACACTTGTGCACAAATCCTTTTCTTAGTCTTGCTTAAGTAT
TTTTGTATCGATGACTTTCGTGGCAATGAACTCGCTTGACACCTAAGAGT
GCCTAGGCTAAAAGTTGGTGGATGAGGTCTAAATCTCAAATATTGCAAAT
ATTTAGGAAAGTATAATCTTCGTGCTGAAATTAAGAGAACTGTCGCGTAA
TGTTGTAACTTGTTTGATAAAAGTGGGCTGACCTAACTAACTGATGACAG
GGCGACCGTTGTGGGCCTCCTCCACGGTTGTTAACAGATGGCAATTAAAA
CTGAGGAAAGCATATAATTTAGAATATATAAACGCATTCGCACGCCATTT
TCACCCATTTTCCAAAAAACCCAGCCAGCTCGATTGCATGACCATATTTT
GTTGCACTTAACTTGTATTTTGCGTATCACTGATCTTTATTTCCGTATTT
TTGTACTCTCTGCGCCTCGCATGCACTAACCTCTCAGGTTTCGCCATACC
AGATTTTAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGC
GGATCTTCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGGCC
ACGACGCGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGG
AGGTGGTGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGA
ATGAGCCGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGC
AAGAAAAAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCG
ACTGATGGACTAAGCTAGCTATAATGGACAATGGTTGTCCATGCAATGGG
AAAACATAATCAAAATTACCACCAACCCCTTCCTGAACAATGAACTCTTA
CTCAGCAATCGTCTACTGTCATCTTACCACCTTAATGGATCCTGTCCAGA
AGCATTTTCTTCGCTCAAACGTCTTAGGCACAAACCAAATTCTACGTCTT
CCCCTTGAAGACCACCAAGTTTATGGTGTAAGCCCTGCAAAGGAATCTTA
AAATCGCATAGAACAGGGCTGATGGAAAAGCTTTAGCTCTCTACTATATT
GTTTGATATACCCAAATGTGATCCCAGATCGTAATGTTAACGAAAACTCA
ACTCGAAGCACAAGCAACTCTTCTAGGCTAGTTATGAAAGGAGAAAACCC
CTATATACGACATTTGTATACACTCTCCAGCTCTCAGACATTATTTGGTC
CCCACGCACAACACAATCAACGGCATTACACAATCCCAGTGGAATCGACG
AGGGTTTGCCCCGAATCTCCACCTAATTATAACTACGATATATCAAATTA
TATACCTAACTATATGTGTATGTGTATGACTATAGTTGTCTACGGAACCA
CCAACCTATTTAGATGTGTGTGTGTAGCAGTTAAAAGTATTTCCAAACCA
AACCAAAGCAGCTAACAACAAACGGTTCAATATACAAGCATTAATGTGTA
CTGATTTTATATACAATGTACTAACTACTATATATACGTGTGAATGTCAT
TAGACTCTTAGTTGTTTACACAGGTTTCCTCGAACATCCTCATCAAATTC
ATCAACTAATCCGCACACACGCTCTAATCGGATATATTTTTGTGAGACCC
TTTTTGGAGAGATCTACATACATATATAAAGACACTACTCCTATACCGAA
ACCGAAATTTAAGATATCGATTACTCTCGATTACAGAGAACTTTGTACGC
AGATTTGCAAGGCAACCATTTTGTATAAGATTTGCATTTATTTTGTAACC
TCTTGAATGCAAAGATCTCCCTAAGTTTGAATGCATTGCTAAGCCAATTG
GATGTTTATCGATTACAAAATGTATAAGTATGCGTTATGCAAACATAAAA
CCGTTGTATTTAGTTAATAATATCAGCAATAAACTATAACATGTTTGAAA
TCAAAAAAAAAAAAAAAAAAA
HL03025.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RC | 2425 | CG9368-RC | 24..2425 | 1..2402 | 12010 | 100 | Plus |
CG9368-RA | 1884 | CG9368-RA | 417..1883 | 938..2404 | 7335 | 100 | Plus |
CG9368-RB | 1869 | CG9368-RB | 417..1868 | 953..2404 | 7260 | 100 | Plus |
CG9368-RA | 1884 | CG9368-RA | 75..418 | 1..344 | 1720 | 100 | Plus |
CG9368-RB | 1869 | CG9368-RB | 75..416 | 1..342 | 1710 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 19591420..19593501 | 321..2402 | 10260 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 19591035..19591358 | 1..324 | 1620 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602039..19604122 | 321..2404 | 10420 | 100 | Plus |
3L | 28110227 | 3L | 19601654..19601977 | 1..324 | 1620 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 19595139..19597222 | 321..2404 | 10420 | 100 | Plus |
3L | 28103327 | 3L | 19594754..19595077 | 1..324 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 15:23:46 has no hits.
HL03025.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:41 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 19591035..19591357 | 1..323 | 100 | -> | Plus |
chr3L | 19591423..19593501 | 324..2402 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:09 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..336 | 124..459 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:24 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..336 | 124..459 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 01:27:14 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:00 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..336 | 124..459 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 21:05:08 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:55 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..2402 | 1..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:23 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..2402 | 1..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:14 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 22..2423 | 1..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:00 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RC | 1..2402 | 1..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:08 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RD | 22..2423 | 1..2402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601654..19601976 | 1..323 | 100 | -> | Plus |
3L | 19602042..19604120 | 324..2402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601654..19601976 | 1..323 | 100 | -> | Plus |
3L | 19602042..19604120 | 324..2402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:41 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601654..19601976 | 1..323 | 100 | -> | Plus |
3L | 19602042..19604120 | 324..2402 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:14 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594754..19595076 | 1..323 | 100 | -> | Plus |
arm_3L | 19595142..19597220 | 324..2402 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:14 Download gff for
HL03025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19594754..19595076 | 1..323 | 100 | -> | Plus |
3L | 19595142..19597220 | 324..2402 | 100 | | Plus |
HL03025.hyp Sequence
Translation from 123 to 458
> HL03025.hyp
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence HL03025.hyp has no blast hits.
HL03025.pep Sequence
Translation from 123 to 458
> HL03025.pep
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAE*
Sequence HL03025.pep has no blast hits.