Clone HL03084 Report

Search the DGRC for HL03084

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:30
Well:84
Vector:pBS SK-
Associated Gene/TranscriptCG31778-RA
Protein status:HL03084.pep: gold
Preliminary Size:1307
Sequenced Size:1129

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10030 2001-01-01 Release 2 assignment
CG31778 2001-11-29 Blastp of sequenced clone
CG31778 2003-01-01 Sim4 clustering to Release 3
CG31778 2008-04-29 Release 5.5 accounting
CG31778 2008-08-15 Release 5.9 accounting
CG31778 2008-12-18 5.12 accounting

Clone Sequence Records

HL03084.complete Sequence

1129 bp (1129 high quality bases) assembled on 2001-11-29

GenBank Submission: AY070870

> HL03084.complete
GTGAACCAAATCCGCTTCTTCATCCATCGAAGAATTTTCAGAAATTTCAA
AACTGCTCAAAGTCCAAGAAAAGTTGCAATAAAACCCTAGAGTATTCCCT
ATCTGCATACCAAACTGACAACAGCTGCAACAAAGACTAAGCGCATTTTT
TTGACTGGGCTTTTGCACTCTAGATGAACTTTGCCGTGCCGACGAGTATA
AAAAACTCATAAAATCCAGCAAAATTGCAAAAAGAAAATAAATAAATAAG
AAAAGCAGACGGATCGGCCGATCATCATCCATATACTATAGGCTTTCAAT
CACTCTAGAATCGGACACATTCCGCACTGCCTCTTATATATGGCGAGCTG
CTGCGCATTTGTGTTTGTCCTGAACCAGATTGACATCATCGGGGCCAGGG
AGCAAAGCAGAGCTGCTCTACAGAGTTGACCAACTTGAGACAGAGGAACC
ATCTAATCCATCTAGAACACTTTCGGAAGTACTATCAAAATGGCCAACTT
CAGTCAGCTAAGAATCACCATTGGATTTTGTGTGATTTTGGCCGTTATCC
TGGAACAACCATTCACTGCAGAGGCGGTTGTTCGAGATGCATGCCAGACG
GCGCCGAATAAGAGTGTGTGGCTATGTAGCCCATCTACCCTGGGCATATT
TTTCGATCCGGAGACACAACGTTGTCGCTACATGGGATGCAGTAATCGAA
AGCTGTTCTTAACCCTTGAAGACTGCGAAAAGATTTGCAACAATCCGCGG
CACATCAAGCGACGCAACCAAGCAAAGGCCAATGAAACATCACATTGAAC
ACACCAAAAGGGAAAGAAAATACCCTTAGTTGTTAATTGTCACGTGCCTT
ATTTAGTCGAATGTAATTATATTATTTCAATTTTCGATGGTGAAATTTGT
TAAACCTGAGAATAGTTTCTGCAAACTTTTTTTTATTTTTATACGCACAT
CAAACTGGTTTTTATACTCGAATTAAAATTTATTTTGTTATATATTTTTG
TTAATAAGAAACATTGAAAATCCAGTTGGAGTTTGAAATACTCTAACCCT
AAGATTGAATGAATATCTAGGATGTTGCCTCAATAACACAACATAGAATA
TTTGGAAACATAAAAAAAAAAAAAAAAAA

HL03084.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31778-RA 1240 CG31778-RA 130..1240 1..1111 5555 100 Plus
CG2816-RB 643 CG2816-RB 494..643 1113..964 750 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3704393..3704975 584..1 2855 99.7 Minus
chr2L 23010047 chr2L 3703620..3704147 1111..584 2595 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3704879..3705462 584..1 2920 100 Minus
2L 23513712 2L 3704104..3704633 1113..584 2650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3704879..3705462 584..1 2920 100 Minus
2L 23513712 2L 3704104..3704633 1113..584 2650 100 Minus
Blast to na_te.dros performed 2019-03-16 08:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6637..6726 999..911 131 64.8 Minus
Stalker 7256 Stalker STALKER 7256bp 6531..6603 999..927 130 67.6 Minus

HL03084.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:27:28 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3703620..3704147 584..1111 92 <- Minus
chr2L 3704394..3704975 1..583 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:11 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..309 490..798 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:10 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..309 490..798 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:47:27 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..309 490..798 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:53 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..309 490..798 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:40:49 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..309 490..798 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:37 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..1111 1..1111 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:10 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..1111 1..1111 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:47:27 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 27..1137 1..1111 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:53 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 1..1111 1..1111 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:40:49 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
CG31778-RA 27..1137 1..1111 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:28 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3704106..3704633 584..1111 100 <- Minus
2L 3704880..3705462 1..583 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:28 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3704106..3704633 584..1111 100 <- Minus
2L 3704880..3705462 1..583 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:28 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3704106..3704633 584..1111 100 <- Minus
2L 3704880..3705462 1..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:47:27 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3704106..3704633 584..1111 100 <- Minus
arm_2L 3704880..3705462 1..583 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:20 Download gff for HL03084.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3704106..3704633 584..1111 100 <- Minus
2L 3704880..3705462 1..583 100   Minus

HL03084.pep Sequence

Translation from 489 to 797

> HL03084.pep
MANFSQLRITIGFCVILAVILEQPFTAEAVVRDACQTAPNKSVWLCSPST
LGIFFDPETQRCRYMGCSNRKLFLTLEDCEKICNNPRHIKRRNQAKANET
SH*

HL03084.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14651-PA 101 GF14651-PA 1..101 1..102 344 61.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24406-PA 101 GG24406-PA 1..101 1..102 429 78.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13176-PA 101 GH13176-PA 7..101 8..102 236 50.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31778-PB 102 CG31778-PB 1..102 1..102 547 100 Plus
CG31778-PA 102 CG31778-PA 1..102 1..102 547 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17754-PA 102 GI17754-PA 18..102 18..102 237 56.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19456-PA 99 GL19456-PA 1..98 1..101 275 53.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16469-PA 99 GA16469-PA 1..98 1..101 275 53.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18123-PA 102 GM18123-PA 1..102 1..102 518 92.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22731-PA 102 GD22731-PA 1..102 1..102 485 87.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17582-PA 104 GJ17582-PA 29..100 29..101 247 61.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15465-PA 101 GK15465-PA 1..95 1..96 259 51 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14808-PA 101 GE14808-PA 1..101 1..102 435 78.4 Plus

HL03084.hyp Sequence

Translation from 489 to 797

> HL03084.hyp
MANFSQLRITIGFCVILAVILEQPFTAEAVVRDACQTAPNKSVWLCSPST
LGIFFDPETQRCRYMGCSNRKLFLTLEDCEKICNNPRHIKRRNQAKANET
SH*

HL03084.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31778-PB 102 CG31778-PB 1..102 1..102 547 100 Plus
CG31778-PA 102 CG31778-PA 1..102 1..102 547 100 Plus