Clone HL03650 Report

Search the DGRC for HL03650

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:36
Well:50
Vector:pBS SK-
Associated Gene/TranscriptCG31324-RA
Protein status:HL03650.pep: gold
Preliminary Size:1962
Sequenced Size:1879

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14555 2001-01-01 Release 2 assignment
CG31324 2001-10-10 Blastp of sequenced clone
CG31324 2003-01-01 Sim4 clustering to Release 3
CG31324 2008-04-29 Release 5.5 accounting
CG31324 2008-08-15 Release 5.9 accounting
CG31324 2008-12-18 5.12 accounting

Clone Sequence Records

HL03650.complete Sequence

1879 bp (1879 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061829

> HL03650.complete
CGAGGTGTTCGTCTCGCAGTTTGGTCAAAAAACTGGAAAAGCTACGAGAG
CTTTGTATTTCGCGCTGAACACGAGCGTTTACGTATTTTGCAGTCGCACT
CGAGTATTCGCATATCCGTGTTTGTTGTTTGCCAGCGCGCGTGTGTGCCA
CTGTGTGTGTGTGTGTGTGTGTGCGTGTGAGTGAGTGTAGCTGTGTGTAG
TGGTGTGACGGCCACACGCGCAACGAAAGCGAAAGTTTTGTTTGGCGCGC
GTGTTGCCATTGGCGTCTGCGAATTTGCACACACACGTTCCCTTACCTAG
AATAGATTAAAAGCGTGTGAAAACAAATACGAAAAAATACAGAAAATAAG
AAGAAAAGATAATGTTCATTATTCCCAATGAGGGTGCATTAAATTAAGGG
TATCTAGAGCGGAAGAAACACGACATCAACATCATTCCCGCAGCGTCTGG
TGTGAATACACGCTGCCAAATAAAAGAAGACTCAAGAAGATGGCGCCCAC
CATATGCTCGGAGAAAAAGCAGCTGCGCGAAACGCGGCGACATCATGGCG
TGGCCACAGCCGCCATTTCATCAGCATCCGCAACCGCATCCACCGCATCA
TCGTCCTCGTCCTTGTCCGTGGGATCCACATCTGCAGCTGCCGCCACACA
AGCTAGTTCGGTGCTCAACCATGTGGCCAAAGGTTCGATGAACTCGATGA
GCCGCCGTCGACCGGCGCGATTACAGCGCAGGATGCCTCACATCCTTGCC
CGCGTGTCCTCCTTCTCCACGGACACGAGCAGCGGCGTGGAAACGGAGGT
GGAGATGGACTCCGAGCAGAGGATGCAGCTGGACGACGACCGCTACTCGG
ATGCCAGGATCCAGGGACTGCAGCAACAGCCACATTCCAGCAGCGACAAC
ATCAAGACAGTATTACAGCCGACGACGGCTAGCGGATATAGTAGCAAGCA
GAACCGATCGGCCAGGGCCAAAAACTGTGATCGAGAGGTGCCGCTCCAGA
TAGAGGACGACCACGATGGCGACAGTGGGTACGAGTACAGCCAGGATCCC
ATAAAGGAGCAGCACATGTACCACCAGAATAGCGAAGGCCTGTTGTCCAT
TGCCATCAAGACTATCAAGCTGGTGCAGCGCAACAAGCTGCTGCAAAAGC
GATTGGCCCAACTGCAGCTGGAGACCTCGGAGTTCATTGCCTCGGTGCTG
GCCAACCCGGAAAATCGCCAATTCCGTGACAAAATGTCGCCAAAGGCAGA
GGCCAAGGTCAGCAACATGCTGCTGCGCCACTAAATTGATCTGGAAAAGT
CAAAACAGGCCCCATTTCTGGACGTGATAAGAGTTTTATTTGAAAACAAA
TTTTAAGTCATAGCGAATTGTATTTGATTTTTTATGTATTCGCCCAGAGC
ATTTGTATTCTGTCGCTTAAAGATTTGACGTATTTATTCGCATTGCTCGG
CATGTTGCGGCAACATTTTAGGCAACATCCAAGAAATATTGCCAGCTTCT
GGGCTGAGCGTGTAAATTACATGGAAAATATATGTAAAATCCGAATATCA
TGAATACACGTAATGTATTAAGTTGTAAATGCTTCGCTGCCTATATTTTT
GAAATTCCTTGTTACAATTTTTGGCTTTTATATGCGATATGCATAAAAAA
TTTTTATTAATTTAATACCTTTAATTTATTATTACCATAATCGAATAGAT
TCCTTTTTTAAACGTATTTTCAAATTTGTCCACAATACATACATTATACA
CGTCCAGAAATCCAAATTTCAATGGGCTTCGTTTTGAAAAATTCGTACTG
ATTAAATATACAAACATATTCATCAAGGTTTAATGAAGAAATCGCTATGC
TAACATTTACAAAAAAAAAAAAAAAAAAA

HL03650.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324.b 2413 CG31324.b 66..1939 1..1874 9355 99.9 Plus
CG31324-RA 1925 CG31324-RA 66..1925 1..1860 9300 100 Plus
CG31324.a 1256 CG31324.a 70..1256 674..1860 5935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21952010..21953197 673..1860 5940 100 Plus
chr3R 27901430 chr3R 21929889..21930340 1..450 2135 98.7 Plus
chr3R 27901430 chr3R 21947433..21947656 450..673 1120 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26130204 673..1874 5995 99.9 Plus
3R 32079331 3R 26106893..26107342 1..450 2250 100 Plus
3R 32079331 3R 26124434..26124657 450..673 1120 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25869834..25871035 673..1874 5995 99.9 Plus
3R 31820162 3R 25847724..25848173 1..450 2250 100 Plus
3R 31820162 3R 25865265..25865488 450..673 1120 100 Plus
Blast to na_te.dros performed 2019-03-16 01:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1659..1776 201..80 122 59 Minus

HL03650.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:13:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21929889..21930041 1..153 100 == Plus
chr3R 21947434..21947656 451..673 100 -> Plus
chr3R 21930098..21930340 208..450 98 -> Plus
chr3R 21952011..21953197 674..1860 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:10:30 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 490..1284 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:23 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 490..1284 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:30 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 490..1284 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 490..1284 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:26:48 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 490..1284 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:10:29 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 24..1887 1..1860 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:23 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 24..1883 1..1860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:30 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 26..1885 1..1860 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 24..1887 1..1860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:26:48 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 26..1885 1..1860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26106893..26107342 1..450 100 -> Plus
3R 26124435..26124657 451..673 100 -> Plus
3R 26129004..26130190 674..1860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26106893..26107342 1..450 100 -> Plus
3R 26124435..26124657 451..673 100 -> Plus
3R 26129004..26130190 674..1860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:16 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26106893..26107342 1..450 100 -> Plus
3R 26124435..26124657 451..673 100 -> Plus
3R 26129004..26130190 674..1860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:30 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950157..21950379 451..673 100 -> Plus
arm_3R 21932615..21933064 1..450 100 -> Plus
arm_3R 21954726..21955912 674..1860 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:36 Download gff for HL03650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25847724..25848173 1..450 100 -> Plus
3R 25865266..25865488 451..673 100 -> Plus
3R 25869835..25871021 674..1860 100   Plus

HL03650.hyp Sequence

Translation from 489 to 1283

> HL03650.hyp
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRH*

HL03650.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PB 264 CG31324-PB 1..264 1..264 1310 100 Plus
CG31324-PA 264 CG31324-PA 1..264 1..264 1310 100 Plus
CG31324-PC 203 CG31324-PC 1..203 62..264 1020 99.5 Plus

HL03650.pep Sequence

Translation from 489 to 1283

> HL03650.pep
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRH*

HL03650.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18508-PA 269 GF18508-PA 1..269 1..264 616 60 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11464-PA 273 GG11464-PA 1..273 1..264 1018 82.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19465-PA 291 GH19465-PA 1..291 1..264 462 44.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PB 264 CG31324-PB 1..264 1..264 1310 100 Plus
CG31324-PA 264 CG31324-PA 1..264 1..264 1310 100 Plus
CG31324-PC 203 CG31324-PC 1..203 62..264 1020 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24700-PA 291 GI24700-PA 1..291 1..264 401 41.7 Plus
Dmoj\GI16026-PA 183 GI16026-PA 18..183 132..264 355 53.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21829-PA 273 GL21829-PA 1..273 1..264 520 58.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16182-PA 273 GA16182-PA 1..273 1..264 542 58.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10308-PA 509 GM10308-PA 307..509 62..264 1064 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21271-PA 264 GD21271-PA 1..264 1..264 1373 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23916-PA 245 GJ23916-PA 2..245 41..264 329 40.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14466-PA 298 GK14466-PA 1..298 1..264 433 44 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23656-PA 521 GE23656-PA 319..521 62..264 971 94.1 Plus