Clone HL04357 Report

Search the DGRC for HL04357

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:57
Vector:pBS SK-
Associated Gene/TranscriptCG33969-RB
Protein status:HL04357.pep: validated full length
Preliminary Size:1715
Sequenced Size:1554

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32429 2001-10-10 Blastp of sequenced clone
CG32429 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

HL04357.complete Sequence

1554 bp (1554 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061019

> HL04357.complete
ATTTCATGCATTTACAATTTGTGCGTCATCAAGTTACAACTAAAGCCGAG
AAAGAATTACGATAAATACCGAGATGAACTGCGAAGGACCAAAGTCATTG
CCATTGCCATTGTCATTGCCTTATTGATCTTAGGTCTACTGTACATGCAC
TTCAATCGGCTGGCGCACGTTGGGTGCCCTTGGGAGGAACATGTGGTTAT
AGCGACTATCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTTCTGGTGGCTC
GTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAATCGGATTCAG
TGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGCCAGCTCGCCG
TTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCTCGTGCTCCAG
GAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATTGCGTACGCCA
GCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCCCACAAAGACG
ACCTGAAATGGGTTTGTTGCTCAGTCTACGAGGATATGTATGTAACGAAA
ATTGATACTTACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
AGAAATGGAAAATTCGTAACTGGTACATGGCCCTTCATTTCTGGCTTTGC
TACCTTGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCC
ACCATAAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGG
TGGCCAGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAA
CACAGGCCGAGGAATGTACCGCCGCCCAAGCTGAACAATACATTTCATTT
AGCATCGTTGCAATAATGTGTAATTTCATGAAGAGCAGTCTTACCTCGTG
CCCGAAATCCGCTTGTAGTTGTCGGGACCGTAGACCGCCAGGATGGAGAC
TCCGGATCCGACGTTCACCAGAATAAACGGAAACGGTTGAGAGAAATTGA
ACTGCTGCTTTTCGCTTTTTCTACAAATTGTATGGTTAGGATCTACAGAC
TCCTTGACGCCAGCGCTTGGTCCACTTACAGAATGTCACGTGCGTTTTCG
TAGTAGTAGCACTCCGTGCGATTATGCAGATCGGCGAAGAGAATGCCTTT
GATGAGCGTGTCCAGCTCGTCGAATTTAGCCAGCTTCATGTTGACTTGGT
CGCGGAAATCCTGCTCGAACTTGAATGCGCCACCGCCGGTGGCACAAACC
GTGGTCACCAGCTCGGCCATGCCCTTCTGCTTGGCAAGCGATAGGAAGTT
GCCCATGTCCGTGGTCTGGAAGCGAATGAAATGCAAGGAGCCGCGTCTTT
TGCGTATCTCGACATTGTCCATCTGAAAAACGATAGGGATTACAAAAACC
GCTTAGGGCGAATAAATATTACCTATTCTAAGAATAAAAAAAAAAAAAAA
AAAA

HL04357.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RB 3661 CG33969-RB 2127..3661 1..1535 7675 100 Plus
CG33969.a 3628 CG33969.a 2094..3628 1..1535 7675 100 Plus
fbl.i 2053 fbl.i 1024..1526 503..1 2515 100 Minus
fbl.i 2053 fbl.i 290..585 1475..1180 1480 100 Minus
fbl.i 2053 fbl.i 710..888 932..754 895 100 Minus
fbl.i 2053 fbl.i 887..1026 700..561 700 100 Minus
fbl.i 2053 fbl.i 586..711 1120..995 630 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20378910..20380444 1535..1 7660 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389851..20391387 1537..1 7685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20382951..20384487 1537..1 7685 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:47:52 has no hits.

HL04357.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20378910..20380444 1..1535 99   Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:09 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
Ptx1-RD 567..593 1350..1376 92   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:29 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1958..3492 1..1535 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:15 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1958..3492 1..1535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 09:48:58 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:04 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1958..3492 1..1535 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 09:50:56 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20389853..20391387 1..1535 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20389853..20391387 1..1535 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20389853..20391387 1..1535 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20382953..20384487 1..1535 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:58 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20382953..20384487 1..1535 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:27 Download gff for HL04357.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382953..20384487 1..1535 100   Minus

HL04357.pep Sequence

Translation from 310 to 657

> HL04357.pep
MLHSVVKGGCQLAVELQQATQSPKVSLVLQEKTLHCAIGPELHCVRQQLH
GNGVNSQKVAHKDDLKWVCCSVYEDMYVTKIDTYPIDLLIQRAHPCYGAD
IIRYGDQSGVGQIFA*
Sequence HL04357.pep has no blast hits.

HL04357.hyp Sequence

Translation from 310 to 657

> HL04357.hyp
MLHSVVKGGCQLAVELQQATQSPKVSLVLQEKTLHCAIGPELHCVRQQLH
GNGVNSQKVAHKDDLKWVCCSVYEDMYVTKIDTYPIDLLIQRAHPCYGAD
IIRYGDQSGVGQIFA*
Sequence HL04357.hyp has no blast hits.