Clone HL04389 Report

Search the DGRC for HL04389

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:89
Vector:pBS SK-
Associated Gene/TranscriptCG31555-RB
Protein status:HL04389.pep: wuzgold
Preliminary Size:1976
Sequenced Size:2038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31555 2001-10-10 Blastp of sequenced clone
CG31555 2003-01-01 Sim4 clustering to Release 3
CG31555 2008-04-29 Release 5.5 accounting
CG31555 2008-08-15 Release 5.9 accounting
CG31555 2008-12-18 5.12 accounting

Clone Sequence Records

HL04389.complete Sequence

2038 bp (2038 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061020

> HL04389.complete
AGGACTAGAGCCAGGTCATGCTTCAATTAAATGTCAATCCCCACGCTCTT
CATTTGTACCGAGAAGTACATATTTTTGTAAACTTTATTAGGAACACCGA
GATCTAAAGCGAAACTACTATAGTATTGTAACAAAACATGGATGTTTTAA
AACGGAAATTAAGCAAACGCAAAACCAAAGTATACTTTAGACGCAATTTT
TGTAGCATAATTGTACACGTAAACTGCATTTCCGATGTTAGCTGAACAAC
CGTATATATATATATATAGTATATATATTACATATATGTATGTATATACA
GACACCCACATACGAGCGCCAATAGAGCGAGATACACCCGTTTTTATTGT
GCTGCGCATTTTCAACGTGCGGCTGAACTGTGAATTCGAGTATAGTACCC
TAGATATAGGTAGAATCGGTACAAACCAGGTGGTACAGGTGGCATCGCGT
GCAAAGCCGCACTTGATGTAACCGAATTATGAAATTGTAGAACCCAATCG
GAAATCGGTGGCATGTCGTTGTCAGACAAACCGCGGTATCCGCGGGATAC
GCCGGAGGGGCACCCTCAAGCAATCGGGAGCAAATAAGAGCAACCGAGGG
TAACCGGAAGCGGAAGCGGGCCTCCCGCCATCCGGCCATCTCGGCAGATG
TTGCGCATACGCCCCGGCGGTCGCAGCTGCAACTCACAATTAGGCTAGTA
AGTTCGCGTTGTTTGTTATCAGTGTCGTTGATGTTGATGTTGAATTGAAT
TGAAATTGAAATTGAAATTGAATTGCCGTGTCATTGTTAACCGTATTCAA
GTTGTAAACCGACGGCGTCGGAATTAGCTGTTTTTGGGAACCAAGCGAGG
CGACTTAGCAGGGCGGCACTCATCGACCCACGCAGGAGATTATACAAATT
ATACAAGCATTATAAATAGGTGTCCATAGTACCCATAAACATACATACAT
ATATACATAAGCTGGTCCAAGGGGCTCTCGAACCAACTCCAACCTCCAGC
CAAGTGTCGCGAACTTTTAATCCGCATCCGGCGCGCAGCCTGGCCAAGAC
TCTTCCGAGTCCCTCGACCATCGACTCCCGACCTCTAGAGATCCCTCCAG
TTTCCCCGAACAGAAACTAGCGAAGTAACCACGTTATTCTATAGATGTGT
ATGTGTCTATAAATATACTTTGTAGACGTTCACTCGCCGGACGCCGCCGA
GCTCGAAAAAACTGAACAACCAGCCAACCCGGGAAGCCATCGGCCAGCCA
GCCAGAAGCACAAGATCTCTTCAGGTTCGGGTTACACCCACTCGAGCCCG
GAGCAAGTGCTGTCATTCTCTTGGCCAACTGGCTAGCTCAGCTGGCCAAG
TTAAGAGAGCGGCGCAGATCGCTCTCACATGGTTTCAAAACCGCAGCCCA
ACAACCAAAACAAGCGAACAATGTACGAATAATTATTATGAAACGATGAG
CAAATAGACGCTAAGCGAACAGCAAGGAAGCCATCAAATGAATCAGCCAA
CGAGCGATATACGAAGCTCAATTACCCTGTACATATTATTTTTTCTCAAT
TTCGTACTTATGACTGTAGAAATCTGTTAACGCAATAAACGAGTTTGGAT
CTTAATTTGATTATGAAATGTGTAATAATAGGTTGGAAGAGCTATTTCAT
AAAAATTGTATTTGTGTTTAATTATCATTATAAGTTTTGCTCAGCACTTA
CGTGTTTCCAAAAATTAACCAGATGGGGTAATTGTTATAATGTACAATAA
AATGTTTAGATTTGCATATTTATTATTATGAATATTTGTATGATTATATT
TTTAAATACGTATACTATAAGCTTGTGAGCTTCCCAACTGAACCCCCAAC
TATGATTAACTATTGTTTGCCAATCAAATGCTAAAAATACAGCTCAACCA
TGTTTTGATTCGATGACTTCAAAAGGGGTTGATGCAGAGTTAAAGGCGGA
AAACATCTGCGAAGCGTCAGCGTTGATAAATGTAAAACAAAGCAAAAAGC
AAATAAAGTTTAGCAACAACAAAAAAAAAAAAAAAAAA

HL04389.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31555-RA 2058 CG31555-RA 1..2021 1..2021 10090 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1636886..1638905 1..2020 10085 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5811239..5813259 1..2021 10090 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5552070..5554090 1..2021 10090 99.9 Plus
Blast to na_te.dros performed 2019-03-16 23:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5426..5629 1611..1823 190 58.3 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 864..1015 1802..1643 134 56.2 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 1900..1995 1826..1730 122 65.3 Minus
Stalker 7256 Stalker STALKER 7256bp 1794..1889 1826..1730 122 64 Minus
accord2 7650 accord2 QBERT 7650bp 6577..6627 1756..1809 119 72.2 Plus
accord2 7650 accord2 QBERT 7650bp 6247..6299 1753..1803 116 71.7 Plus

HL04389.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:40:37 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1636886..1638905 1..2020 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:29 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RA 1..237 235..471 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:34 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RB 1..237 235..471 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:35 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RA 1..237 235..471 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:43 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RA 1..2020 1..2020 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:34 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RB 685..2704 1..2020 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:24 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG11000-RC 4797..6816 1..2020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:36 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG31555-RA 1..2020 1..2020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:05 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
CG11000-RC 4797..6816 1..2020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5811239..5813258 1..2020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5811239..5813258 1..2020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5811239..5813258 1..2020 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:24 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1636961..1638980 1..2020 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:24 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1636961..1638980 1..2020 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:40 Download gff for HL04389.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5552070..5554089 1..2020 99   Plus

HL04389.hyp Sequence

Translation from 234 to 470

> HL04389.hyp
MLAEQPYIYIYSIYITYMYVYTDTHIRAPIERDTPVFIVLRIFNVRLNCE
FEYSTLDIGRIGTNQVVQVASRAKPHLM*
Sequence HL04389.hyp has no blast hits.

HL04389.pep Sequence

Translation from 234 to 470

> HL04389.pep
MLAEQPYIYIYSIYITYMYVYTDTHIRAPIERDTPVFIVLRIFNVRLNCE
FEYSTLDIGRIGTNQVVQVASRAKPHLM*

HL04389.pep Blast Records

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19825-PA 77 GD19825-PA 1..77 1..78 318 82.3 Plus