Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
HL04389.complete Sequence
2038 bp (2038 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061020
> HL04389.complete
AGGACTAGAGCCAGGTCATGCTTCAATTAAATGTCAATCCCCACGCTCTT
CATTTGTACCGAGAAGTACATATTTTTGTAAACTTTATTAGGAACACCGA
GATCTAAAGCGAAACTACTATAGTATTGTAACAAAACATGGATGTTTTAA
AACGGAAATTAAGCAAACGCAAAACCAAAGTATACTTTAGACGCAATTTT
TGTAGCATAATTGTACACGTAAACTGCATTTCCGATGTTAGCTGAACAAC
CGTATATATATATATATAGTATATATATTACATATATGTATGTATATACA
GACACCCACATACGAGCGCCAATAGAGCGAGATACACCCGTTTTTATTGT
GCTGCGCATTTTCAACGTGCGGCTGAACTGTGAATTCGAGTATAGTACCC
TAGATATAGGTAGAATCGGTACAAACCAGGTGGTACAGGTGGCATCGCGT
GCAAAGCCGCACTTGATGTAACCGAATTATGAAATTGTAGAACCCAATCG
GAAATCGGTGGCATGTCGTTGTCAGACAAACCGCGGTATCCGCGGGATAC
GCCGGAGGGGCACCCTCAAGCAATCGGGAGCAAATAAGAGCAACCGAGGG
TAACCGGAAGCGGAAGCGGGCCTCCCGCCATCCGGCCATCTCGGCAGATG
TTGCGCATACGCCCCGGCGGTCGCAGCTGCAACTCACAATTAGGCTAGTA
AGTTCGCGTTGTTTGTTATCAGTGTCGTTGATGTTGATGTTGAATTGAAT
TGAAATTGAAATTGAAATTGAATTGCCGTGTCATTGTTAACCGTATTCAA
GTTGTAAACCGACGGCGTCGGAATTAGCTGTTTTTGGGAACCAAGCGAGG
CGACTTAGCAGGGCGGCACTCATCGACCCACGCAGGAGATTATACAAATT
ATACAAGCATTATAAATAGGTGTCCATAGTACCCATAAACATACATACAT
ATATACATAAGCTGGTCCAAGGGGCTCTCGAACCAACTCCAACCTCCAGC
CAAGTGTCGCGAACTTTTAATCCGCATCCGGCGCGCAGCCTGGCCAAGAC
TCTTCCGAGTCCCTCGACCATCGACTCCCGACCTCTAGAGATCCCTCCAG
TTTCCCCGAACAGAAACTAGCGAAGTAACCACGTTATTCTATAGATGTGT
ATGTGTCTATAAATATACTTTGTAGACGTTCACTCGCCGGACGCCGCCGA
GCTCGAAAAAACTGAACAACCAGCCAACCCGGGAAGCCATCGGCCAGCCA
GCCAGAAGCACAAGATCTCTTCAGGTTCGGGTTACACCCACTCGAGCCCG
GAGCAAGTGCTGTCATTCTCTTGGCCAACTGGCTAGCTCAGCTGGCCAAG
TTAAGAGAGCGGCGCAGATCGCTCTCACATGGTTTCAAAACCGCAGCCCA
ACAACCAAAACAAGCGAACAATGTACGAATAATTATTATGAAACGATGAG
CAAATAGACGCTAAGCGAACAGCAAGGAAGCCATCAAATGAATCAGCCAA
CGAGCGATATACGAAGCTCAATTACCCTGTACATATTATTTTTTCTCAAT
TTCGTACTTATGACTGTAGAAATCTGTTAACGCAATAAACGAGTTTGGAT
CTTAATTTGATTATGAAATGTGTAATAATAGGTTGGAAGAGCTATTTCAT
AAAAATTGTATTTGTGTTTAATTATCATTATAAGTTTTGCTCAGCACTTA
CGTGTTTCCAAAAATTAACCAGATGGGGTAATTGTTATAATGTACAATAA
AATGTTTAGATTTGCATATTTATTATTATGAATATTTGTATGATTATATT
TTTAAATACGTATACTATAAGCTTGTGAGCTTCCCAACTGAACCCCCAAC
TATGATTAACTATTGTTTGCCAATCAAATGCTAAAAATACAGCTCAACCA
TGTTTTGATTCGATGACTTCAAAAGGGGTTGATGCAGAGTTAAAGGCGGA
AAACATCTGCGAAGCGTCAGCGTTGATAAATGTAAAACAAAGCAAAAAGC
AAATAAAGTTTAGCAACAACAAAAAAAAAAAAAAAAAA
HL04389.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31555-RA | 2058 | CG31555-RA | 1..2021 | 1..2021 | 10090 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 1636886..1638905 | 1..2020 | 10085 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5811239..5813259 | 1..2021 | 10090 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 5552070..5554090 | 1..2021 | 10090 | 99.9 | Plus |
Blast to na_te.dros performed 2019-03-16 23:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 5426..5629 | 1611..1823 | 190 | 58.3 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 864..1015 | 1802..1643 | 134 | 56.2 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1900..1995 | 1826..1730 | 122 | 65.3 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 1794..1889 | 1826..1730 | 122 | 64 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 6577..6627 | 1756..1809 | 119 | 72.2 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 6247..6299 | 1753..1803 | 116 | 71.7 | Plus |
HL04389.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:40:37 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 1636886..1638905 | 1..2020 | 94 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:29 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RA | 1..237 | 235..471 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:34 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RB | 1..237 | 235..471 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:35 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RA | 1..237 | 235..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:43 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RA | 1..2020 | 1..2020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:34 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RB | 685..2704 | 1..2020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:24 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11000-RC | 4797..6816 | 1..2020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:36 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31555-RA | 1..2020 | 1..2020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:05 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11000-RC | 4797..6816 | 1..2020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5811239..5813258 | 1..2020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5811239..5813258 | 1..2020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:40:37 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5811239..5813258 | 1..2020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:24 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1636961..1638980 | 1..2020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:24 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1636961..1638980 | 1..2020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:40 Download gff for
HL04389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5552070..5554089 | 1..2020 | 99 | | Plus |
HL04389.hyp Sequence
Translation from 234 to 470
> HL04389.hyp
MLAEQPYIYIYSIYITYMYVYTDTHIRAPIERDTPVFIVLRIFNVRLNCE
FEYSTLDIGRIGTNQVVQVASRAKPHLM*
Sequence HL04389.hyp has no blast hits.
HL04389.pep Sequence
Translation from 234 to 470
> HL04389.pep
MLAEQPYIYIYSIYITYMYVYTDTHIRAPIERDTPVFIVLRIFNVRLNCE
FEYSTLDIGRIGTNQVVQVASRAKPHLM*
HL04389.pep Blast Records
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19825-PA | 77 | GD19825-PA | 1..77 | 1..78 | 318 | 82.3 | Plus |