Clone HL05382 Report

Search the DGRC for HL05382

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:53
Well:82
Vector:pBS SK-
Associated Gene/TranscriptCG30017-RA
Protein status:HL05382.pep: validated full length
Preliminary Size:1879
Sequenced Size:1804

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30017 2001-10-10 Blastp of sequenced clone
CG30017 2003-01-01 Sim4 clustering to Release 3
CG30017 2008-04-29 Release 5.5 accounting
CG30017 2008-08-15 Release 5.9 accounting
CG30017 2008-12-18 5.12 accounting

Clone Sequence Records

HL05382.complete Sequence

1804 bp (1804 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061026

> HL05382.complete
CCATAATCAAAGTTATCCTTATCTTTCTTTCAAATAACTATCTGCTTCGT
ACAAATTCTGTGAATAATACCCATTATTTGCCGCCGTGTAGCTAAAATGG
CAAGAGCAAACAGGAAATGAACCCGCATGCACTTTTTCAAGTACCTTTCG
TTCGAATTCGCTGGCCGATTGCATCGAGTTGTTCACTCGAGCACCGGAGT
TGGAGCTGCGACTTGAGCTTGAGCTTGGTCTAAAGTAAATTTTGTCGTCG
TCTTGTGTTTCTTAGTTCGCCTTTAAGTTGTGCACATACCCAGCGACTTA
TACGAATGTTCCATGCGGGTATATTCGCACTTGCAGTTGTGAGAACAATG
CTGAATGTGCGAACTATTCAATGCAGTTTCCCACCAATTACATTTAGCCT
TGAATACCAATGGGCAATTGCGTGGGGCTAACACTGTTTCAACTGGGAGC
TTAGGATAATTCGTTCATTCGTCTTACTTATTCAGAAACAGTGTTTAATA
TGCTTTTCGAAATGCAGTAGAGATTCAAATGTATTTTAGATACTTAACCT
TCAAGATTAAAAAATGGTTGTGATGCATATAACTAACCTTTACCATCTCG
AATTATCGAATATCACCTGCCCTTGCTTTAGTTTCTATAGTTTCTATAAT
AACAAAATGTTGAATCTCAAAATCACAATTCTCCGCGCTCAGCAGTTCAA
TTGAAAGGTATCGCCATGGCGAATGTGCACGTCTAGCCTCACCTTTTAGT
TTTATTTCATTGCATTTTGTTTTGTTAATTTCCATGCAATTTCAGGGCAT
TTCATTCCGCTTGCGCGTAGTTGTTGTTCCCGAACCCCAAGTAGATGTTT
TTCGCAATGTTTGCGCAGTTGTGTGGGCATTTGCATTTGTATCTGAGTGC
GACTGTTTGAGTCCGGATTGCAGGGGTGCGGATGTGTGTGGAAGTGTGAG
TCGGCCAACCTGTTCGGAACTCAAGGAAAATGAGTCAGCAACGCCGGGCC
GGGCCGTGCCGGGCCGGGCTTTCGCATCCATGAGATACATTTCGAGTAGA
CGCCGTAAAGTGTTTACCGAGGACATCGAGGTCTGCGGGGTCCTTCTTCC
TTTCTGACCTGCACTCAAGCGTTTATCCGGCGAAGGTTTTGATTATTTTG
TTTCATGTGCCCTTAGCAATGTCTCATATTACTTGCAGGGAATGGGGGCT
TGTTCATATGTATATACCTACATACATATGCATGTATCCCCTGCCATCCG
TATCTTTTCCTCTTCGCTTTGTTCGTCGCCCCTTCGCTTCATTTCCCGGC
TATGCATGGGGCCACTCTAAATGTGTTCAATGTGTAGTTTCCGATAAGCA
TGCATTATGATATACACTTCGAGGCCGAAGTCGTACTGCGTCTTTTTAAT
TGAGCTACAAAATGATCTGACACCAAAGAGCAGGTTACATAAAAAGATAC
ATTTCCAAAACCATCTACCATCCTGTAGGAAGAAACTAATATTTGGAGAT
GCATTAATATTGTTTTTAGTAGGTAGAAATTTTCTTTAACCTGCTCACAT
TTTCCTTGATTTACTCGCGTAAGATGCACGACCTTGACAATCTCTGGCCA
AGAGTCTCGGCACAATTATCGTGTTTGGCTTTAATTCCACACGCTTCGTC
TACAATGTTTACCAAACAGATTTGGAGTGCGCTTAGTACCTTCCTTACCT
TCCCTTACCTACTTTATGCCCAAAAAATCCAAGTGGATTGCAGCAGGTGG
CGTGACTAAGACATTCCGCCATGGCAAAGTGAGTTTAAAAAAAAAAAAAA
AAAA

HL05382.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 20:06:01 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6758190..6759962 1785..1 8285 97.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10870570..10872369 1800..1 8985 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10871769..10873568 1800..1 8985 99.9 Minus
Blast to na_te.dros performed 2019-03-15 17:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6862..6905 1545..1503 118 77.3 Minus
Stalker 7256 Stalker STALKER 7256bp 6761..6798 1539..1503 115 81.6 Minus

HL05382.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:31 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6758189..6758954 1020..1786 98 == Minus
chr2R 6758967..6759962 1..992 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:38 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 1..324 784..1107 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:55 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 1..324 784..1107 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:09 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 1..1786 1..1786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:55 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
CG30017-RA 1..1786 1..1786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:31 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10870584..10872369 1..1786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:31 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10870584..10872369 1..1786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:31 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10870584..10872369 1..1786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:16 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758089..6759874 1..1786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:16 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758089..6759874 1..1786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:16 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6758089..6759874 1..1786 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:10 Download gff for HL05382.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10871783..10873568 1..1786 99   Minus

HL05382.pep Sequence

Translation from 783 to 1106

> HL05382.pep
MQFQGISFRLRVVVVPEPQVDVFRNVCAVVWAFAFVSECDCLSPDCRGAD
VCGSVSRPTCSELKENESATPGRAVPGRAFASMRYISSRRRKVFTEDIEV
CGVLLPF*

HL05382.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16568-PA 118 GG16568-PA 1..78 1..77 307 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19465-PA 54 GM19465-PA 1..54 1..57 132 53.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17880-PA 54 GD17880-PA 1..54 1..57 128 51.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18105-PA 63 GE18105-PA 1..50 1..52 220 90.4 Plus

HL05382.hyp Sequence

Translation from 783 to 1106

> HL05382.hyp
MQFQGISFRLRVVVVPEPQVDVFRNVCAVVWAFAFVSECDCLSPDCRGAD
VCGSVSRPTCSELKENESATPGRAVPGRAFASMRYISSRRRKVFTEDIEV
CGVLLPF*
Sequence HL05382.hyp has no blast hits.