Clone HL05577 Report

Search the DGRC for HL05577

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:55
Well:77
Vector:pBS SK-
Associated Gene/TranscriptRpn13-RA
Protein status:HL05577.pep: gold
Preliminary Size:1585
Sequenced Size:1446

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13349 2001-01-01 Release 2 assignment
CG13349 2001-10-10 Blastp of sequenced clone
CG13349 2003-01-01 Sim4 clustering to Release 3
CG13349 2008-04-29 Release 5.5 accounting
CG13349 2008-08-15 Release 5.9 accounting
CG13349 2008-12-18 5.12 accounting

Clone Sequence Records

HL05577.complete Sequence

1446 bp (1446 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061027

> HL05577.complete
CTAATAACCCCAAACCGATCACGGCACCATAAAACACTTTCGAGTTATGC
GCCAAAGAAAGTCGTAATTACAATACGTTCTTCATCCAATCTTCGCCAGC
TCTCAAGAAGCACCCGCATCATGTTTGGAAGACAAAGTGGACTGGGTAGT
TCCAGCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACAT
GGTGGGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGA
CCCAGAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCC
GGCAAGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAA
GCGCGTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGT
CATCGACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAG
GACGACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATC
CGCCCACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACA
TGCTCAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTT
GGCCAGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGAC
GCCCTCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCT
TGCAGACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCG
AAATCGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGA
AGGTGCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATA
TTGACCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATT
GCCGATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGA
GGATGTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCC
CGCAGTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCC
CAGCTGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGC
CGCCGCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGA
GTCTGCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAG
AAGGCCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACAC
AGATCCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGTAGCTTACGTGTG
CGGCTTGGTAGTCATTGATATGGAATCCGAAAGCAAATTTTTTCATGTGC
TGAGTGATTTTTGGATGCTAAATAAATTCAAATGGGAGTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

HL05577.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-RF 1449 CG13349-RF 21..1412 1..1392 6960 100 Plus
CG13349-RA 1532 CG13349-RA 151..1445 98..1392 6475 100 Plus
CG13349-RD 1526 CG13349-RD 101..839 98..836 3695 100 Plus
CG13349-RD 1526 CG13349-RD 943..1500 835..1392 2790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9846898..9847538 641..1 3190 99.8 Minus
chr2R 21145070 chr2R 9845875..9846430 1390..835 2765 99.8 Minus
chr2R 21145070 chr2R 9846534..9846728 836..642 975 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13959568..13960208 641..1 3205 100 Minus
2R 25286936 2R 13958543..13959100 1392..835 2790 100 Minus
2R 25286936 2R 13959204..13959398 836..642 975 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13960767..13961407 641..1 3205 100 Minus
2R 25260384 2R 13959742..13960299 1392..835 2790 100 Minus
2R 25260384 2R 13960403..13960597 836..642 975 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:29:04 has no hits.

HL05577.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:30:24 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9846535..9846728 642..835 100 <- Minus
chr2R 9845875..9846429 836..1390 99 <- Minus
chr2R 9846898..9847538 1..641 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 1..1170 121..1290 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 1..1170 121..1290 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:29:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 1..1170 121..1290 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:35 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 1..1170 121..1290 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:07:23 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 1..1170 121..1290 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:44 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RF 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RF 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:29:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RF 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:35 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RF 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:07:23 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RF 1..1390 1..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:24 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959099 836..1390 100 <- Minus
2R 13959205..13959398 642..835 100 <- Minus
2R 13959568..13960208 1..641 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:24 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959099 836..1390 100 <- Minus
2R 13959205..13959398 642..835 100 <- Minus
2R 13959568..13960208 1..641 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:24 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959099 836..1390 100 <- Minus
2R 13959205..13959398 642..835 100 <- Minus
2R 13959568..13960208 1..641 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:40 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846050..9846604 836..1390 100 <- Minus
arm_2R 9846710..9846903 642..835 100 <- Minus
arm_2R 9847073..9847713 1..641 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:50 Download gff for HL05577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13959744..13960298 836..1390 100 <- Minus
2R 13960404..13960597 642..835 100 <- Minus
2R 13960767..13961407 1..641 100   Minus

HL05577.hyp Sequence

Translation from 0 to 1289

> HL05577.hyp
LITPNRSRHHKTLSSYAPKKVVITIRSSSNLRQLSRSTRIMFGRQSGLGS
SSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTS
GKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDK
DDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQQQLMQLFGGV
GQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENVSVPRTPSAPS
KSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTALPGADAINQII
ADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSA
QLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEK
KASDPETPTSVARDENTDPATEKQEEKQK*

HL05577.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PF 389 CG13349-PF 1..389 41..429 2001 100 Plus
Rpn13-PB 389 CG13349-PB 1..389 41..429 2001 100 Plus
Rpn13-PA 389 CG13349-PA 1..389 41..429 2001 100 Plus
Rpn13-PE 424 CG13349-PE 1..424 41..429 1955 91.7 Plus
Rpn13-PD 424 CG13349-PD 1..424 41..429 1955 91.7 Plus

HL05577.pep Sequence

Translation from 120 to 1289

> HL05577.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL
PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL
AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT
MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQK*

HL05577.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11152-PA 387 GF11152-PA 1..387 1..389 1652 87 Plus
Dana\GF21327-PA 318 GF21327-PA 1..311 25..341 389 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22456-PA 389 GG22456-PA 1..389 1..389 1777 95.1 Plus
Dere\GG18742-PA 402 GG18742-PA 84..393 2..344 412 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22954-PA 408 GH22954-PA 1..408 1..389 1516 76.6 Plus
Dgri\GH24600-PA 108 GH24600-PA 1..93 31..123 323 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PF 389 CG13349-PF 1..389 1..389 2001 100 Plus
Rpn13-PB 389 CG13349-PB 1..389 1..389 2001 100 Plus
Rpn13-PA 389 CG13349-PA 1..389 1..389 2001 100 Plus
Rpn13-PE 424 CG13349-PE 1..424 1..389 1955 91.7 Plus
Rpn13-PD 424 CG13349-PD 1..424 1..389 1955 91.7 Plus
Rpn13-PG 424 CG13349-PG 1..424 1..389 1955 91.7 Plus
Rpn13R-PA 324 CG6789-PA 2..315 10..344 434 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18444-PA 416 GI18444-PA 1..416 1..385 1380 72.7 Plus
Dmoj\GI15270-PA 203 GI15270-PA 65..187 3..122 329 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17076-PA 384 GL17076-PA 1..384 1..389 1615 84.9 Plus
Dper\GL14276-PA 204 GL14276-PA 3..134 16..137 297 43.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12224-PA 384 GA12224-PA 1..384 1..389 1606 84.7 Plus
Dpse\GA22734-PA 319 GA22734-PA 3..312 16..351 341 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20242-PA 389 GM20242-PA 1..389 1..389 2043 98.5 Plus
Dsec\GM23253-PA 389 GM23253-PA 1..389 1..389 2043 98.5 Plus
Dsec\GM12384-PA 322 GM12384-PA 2..313 10..344 424 32.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25728-PA 389 GD25728-PA 1..389 1..389 2020 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21528-PA 406 GJ21528-PA 1..406 1..389 1469 75.7 Plus
Dvir\GJ16842-PA 199 GJ16842-PA 73..180 15..122 351 53.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17850-PA 397 GK17850-PA 1..397 1..389 1551 79.2 Plus
Dwil\GK10286-PA 288 GK10286-PA 171..285 244..345 151 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13327-PA 389 GE13327-PA 1..389 1..389 1791 95.9 Plus
Dyak\GE16384-PA 306 GE16384-PA 2..305 10..348 415 31.6 Plus