BDGP Sequence Production Resources |
Search the DGRC for HL05577
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 55 |
Well: | 77 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rpn13-RA |
Protein status: | HL05577.pep: gold |
Preliminary Size: | 1585 |
Sequenced Size: | 1446 |
Gene | Date | Evidence |
---|---|---|
CG13349 | 2001-01-01 | Release 2 assignment |
CG13349 | 2001-10-10 | Blastp of sequenced clone |
CG13349 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13349 | 2008-04-29 | Release 5.5 accounting |
CG13349 | 2008-08-15 | Release 5.9 accounting |
CG13349 | 2008-12-18 | 5.12 accounting |
1446 bp (1446 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061027
> HL05577.complete CTAATAACCCCAAACCGATCACGGCACCATAAAACACTTTCGAGTTATGC GCCAAAGAAAGTCGTAATTACAATACGTTCTTCATCCAATCTTCGCCAGC TCTCAAGAAGCACCCGCATCATGTTTGGAAGACAAAGTGGACTGGGTAGT TCCAGCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACAT GGTGGGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGA CCCAGAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCC GGCAAGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAA GCGCGTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGT CATCGACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAG GACGACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATC CGCCCACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACA TGCTCAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTT GGCCAGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGAC GCCCTCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCT TGCAGACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCG AAATCGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGA AGGTGCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATA TTGACCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATT GCCGATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGA GGATGTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCC CGCAGTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCC CAGCTGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGC CGCCGCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGA GTCTGCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAG AAGGCCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACAC AGATCCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGTAGCTTACGTGTG CGGCTTGGTAGTCATTGATATGGAATCCGAAAGCAAATTTTTTCATGTGC TGAGTGATTTTTGGATGCTAAATAAATTCAAATGGGAGTTAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13349-RF | 1449 | CG13349-RF | 21..1412 | 1..1392 | 6960 | 100 | Plus |
CG13349-RA | 1532 | CG13349-RA | 151..1445 | 98..1392 | 6475 | 100 | Plus |
CG13349-RD | 1526 | CG13349-RD | 101..839 | 98..836 | 3695 | 100 | Plus |
CG13349-RD | 1526 | CG13349-RD | 943..1500 | 835..1392 | 2790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9846898..9847538 | 641..1 | 3190 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9845875..9846430 | 1390..835 | 2765 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9846534..9846728 | 836..642 | 975 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13959568..13960208 | 641..1 | 3205 | 100 | Minus |
2R | 25286936 | 2R | 13958543..13959100 | 1392..835 | 2790 | 100 | Minus |
2R | 25286936 | 2R | 13959204..13959398 | 836..642 | 975 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13960767..13961407 | 641..1 | 3205 | 100 | Minus |
2R | 25260384 | 2R | 13959742..13960299 | 1392..835 | 2790 | 100 | Minus |
2R | 25260384 | 2R | 13960403..13960597 | 836..642 | 975 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9846535..9846728 | 642..835 | 100 | <- | Minus |
chr2R | 9845875..9846429 | 836..1390 | 99 | <- | Minus |
chr2R | 9846898..9847538 | 1..641 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RA | 1..1170 | 121..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RA | 1..1170 | 121..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn13-RA | 1..1170 | 121..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RA | 1..1170 | 121..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn13-RA | 1..1170 | 121..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RF | 1..1390 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RF | 1..1390 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn13-RF | 1..1390 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13349-RF | 1..1390 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn13-RF | 1..1390 | 1..1390 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13958545..13959099 | 836..1390 | 100 | <- | Minus |
2R | 13959205..13959398 | 642..835 | 100 | <- | Minus |
2R | 13959568..13960208 | 1..641 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13958545..13959099 | 836..1390 | 100 | <- | Minus |
2R | 13959205..13959398 | 642..835 | 100 | <- | Minus |
2R | 13959568..13960208 | 1..641 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13958545..13959099 | 836..1390 | 100 | <- | Minus |
2R | 13959205..13959398 | 642..835 | 100 | <- | Minus |
2R | 13959568..13960208 | 1..641 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9846050..9846604 | 836..1390 | 100 | <- | Minus |
arm_2R | 9846710..9846903 | 642..835 | 100 | <- | Minus |
arm_2R | 9847073..9847713 | 1..641 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13959744..13960298 | 836..1390 | 100 | <- | Minus |
2R | 13960404..13960597 | 642..835 | 100 | <- | Minus |
2R | 13960767..13961407 | 1..641 | 100 | Minus |
Translation from 0 to 1289
> HL05577.hyp LITPNRSRHHKTLSSYAPKKVVITIRSSSNLRQLSRSTRIMFGRQSGLGS SSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTS GKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDK DDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQQQLMQLFGGV GQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENVSVPRTPSAPS KSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTALPGADAINQII ADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSA QLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEK KASDPETPTSVARDENTDPATEKQEEKQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn13-PF | 389 | CG13349-PF | 1..389 | 41..429 | 2001 | 100 | Plus |
Rpn13-PB | 389 | CG13349-PB | 1..389 | 41..429 | 2001 | 100 | Plus |
Rpn13-PA | 389 | CG13349-PA | 1..389 | 41..429 | 2001 | 100 | Plus |
Rpn13-PE | 424 | CG13349-PE | 1..424 | 41..429 | 1955 | 91.7 | Plus |
Rpn13-PD | 424 | CG13349-PD | 1..424 | 41..429 | 1955 | 91.7 | Plus |
Translation from 120 to 1289
> HL05577.pep MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11152-PA | 387 | GF11152-PA | 1..387 | 1..389 | 1652 | 87 | Plus |
Dana\GF21327-PA | 318 | GF21327-PA | 1..311 | 25..341 | 389 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22456-PA | 389 | GG22456-PA | 1..389 | 1..389 | 1777 | 95.1 | Plus |
Dere\GG18742-PA | 402 | GG18742-PA | 84..393 | 2..344 | 412 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22954-PA | 408 | GH22954-PA | 1..408 | 1..389 | 1516 | 76.6 | Plus |
Dgri\GH24600-PA | 108 | GH24600-PA | 1..93 | 31..123 | 323 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn13-PF | 389 | CG13349-PF | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PB | 389 | CG13349-PB | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PA | 389 | CG13349-PA | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PE | 424 | CG13349-PE | 1..424 | 1..389 | 1955 | 91.7 | Plus |
Rpn13-PD | 424 | CG13349-PD | 1..424 | 1..389 | 1955 | 91.7 | Plus |
Rpn13-PG | 424 | CG13349-PG | 1..424 | 1..389 | 1955 | 91.7 | Plus |
Rpn13R-PA | 324 | CG6789-PA | 2..315 | 10..344 | 434 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18444-PA | 416 | GI18444-PA | 1..416 | 1..385 | 1380 | 72.7 | Plus |
Dmoj\GI15270-PA | 203 | GI15270-PA | 65..187 | 3..122 | 329 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17076-PA | 384 | GL17076-PA | 1..384 | 1..389 | 1615 | 84.9 | Plus |
Dper\GL14276-PA | 204 | GL14276-PA | 3..134 | 16..137 | 297 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12224-PA | 384 | GA12224-PA | 1..384 | 1..389 | 1606 | 84.7 | Plus |
Dpse\GA22734-PA | 319 | GA22734-PA | 3..312 | 16..351 | 341 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20242-PA | 389 | GM20242-PA | 1..389 | 1..389 | 2043 | 98.5 | Plus |
Dsec\GM23253-PA | 389 | GM23253-PA | 1..389 | 1..389 | 2043 | 98.5 | Plus |
Dsec\GM12384-PA | 322 | GM12384-PA | 2..313 | 10..344 | 424 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25728-PA | 389 | GD25728-PA | 1..389 | 1..389 | 2020 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21528-PA | 406 | GJ21528-PA | 1..406 | 1..389 | 1469 | 75.7 | Plus |
Dvir\GJ16842-PA | 199 | GJ16842-PA | 73..180 | 15..122 | 351 | 53.7 | Plus |