Clone HL05638 Report

Search the DGRC for HL05638

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:56
Well:38
Vector:pBS SK-
Associated Gene/TranscriptCG32355-RA
Protein status:HL05638.pep: validated full length
Preliminary Size:2958
Sequenced Size:2996

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6239 2001-01-01 Release 2 assignment
CG32355 2001-10-10 Blastp of sequenced clone
CG32355 2003-01-01 Sim4 clustering to Release 3
CG32355 2008-04-29 Release 5.5 accounting
CG32355 2008-08-15 Release 5.9 accounting
CG32355 2008-12-18 5.12 accounting

Clone Sequence Records

HL05638.complete Sequence

2996 bp (2996 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061028

> HL05638.complete
GGCGGATAGTTATGACCAGGGTGAGTTTGAGGTAGAGGTGTCCACCCAAA
CGGATCCGCTGCCCGATGATTTTGTGTGCGAGGAGTTCGAGATCACTGAG
GACATGAAGATCATCGAACCGCGACGCTCCAATGGATCGGCTAACAAAAC
CCTTGAGGATCTGTTGCGCAGCGTAGAGGCAGCTCAGGAGCAGGATGAGG
TAGATGGAGCTCGAGTTCTGTCCGAGGACGAGCAGCTGGCTAAAGGTCTG
CAGAGATTCCGGGACGCCAATCAGCGCAGCATGTCGGAGCGATCACGGGC
TTCATCGCAAGCAGATCGTTCCAAGTCGCTGAGCCGGCCGCAGACGCCTT
CATCGGCGGTGATCATCGAACGCCGTGTGCCCACTCCCAGCCTAACTGTT
GGCGAGGATGATGCCACGGTGCAGGCCTCACTAATCGTTAGACCCATTAG
TGCTGCCGATTTGATTGACGATGATCTGCGACGGGAGGAGGAGGAACTGC
GTCGTGAGGGCTTGCTCTCTGACAGCTCGGTGCAAAGTAAATCCGACGTG
GAGGATGAGCACGGTGAGGTGGCATTGAGTGACTACGCCGCCAGCACGGC
AGATTTGGACGCAGCGGTGGAGCAACTACAGCAGGCTCAGCTGGAGAGCG
ACTACGAGAGTAAACTGGAGGACGATGAAGTTGAACGAACCCTCAGGGAC
AGCGAGTATGAGGAGGAAAAGTTTTCGGAGCAGGAGGAAGAGCAGGAAAC
AACGAAATTGGAAAAGGAACTAACTGAGCAGGAACTGGAGGAGGCTCTGG
AGAAGGAGCTACAGGAAGCAATGGAGAAGGAGCTATCTGACTACCGCCAA
AAGGAGAAGGAGCAAGAATCAGAGCAAGAGCAGGCCTTCTCCGAGGAGGA
ATTGGCTGCTTCCGAGATTGATTACCACCAATCTGAAGAGGAGCAAGCCA
CCTCCGAGGTCGGTTATCACCCATCTGAGGATGAGCATCCCTTATCCGAT
GGTGAACAGCCTCTCTCCGAGGAGGAGCACACTTTATCCGACACGGAACA
TACCCCGACTGAGCCCGAAACCCAGAAAGTTGAGGAAACCATTCACAAAT
CCACAGCTAGCGAACCCACCGAGGCCGAAGTTGAGCTAAAATTCGTTGCC
ACTTTGCCCACCGAACCAGCTTTTGGAGACAAAGAGGAGGAACCAGAGGA
GCCTCCTCTTCCACCACCACGTCGCAAGTCCACCACCGCCCTAGAAACCA
TTGCCACCACAGCCCTGACCATAGCCGAACAGTACAGCCGCGAGCTTACG
CCCATCCAGACGGTGCAATCTGCGCCAGAACCGCAATTCCCCAGTCGCCT
GGCCGAATTAGAGGTGGAACGTCTGCGCGTCCATGCCCTGCAGGCTGGTC
AGATTCAAGTATCGCAACTGCATGGCAATCAAGTCAAAGCAGACGATCTG
CAGTGCAAGTCCGGACAACTGGTGGTGCAGAATATCGAACTCCCGCCTGG
TTTTATTGATGACATTGTGGAGCGGGTGCAGCGAGAGCAGCGTCCATCTT
TGCTTACCACTGAAACCCAGACTAGTCGGCAGGCAAGTAGCGAACCCGCC
ACCTCCGAGAAGGAGCTGCCCGTTAAGCCACCTCGTCACAGCAAGACCAC
CGAGCAAGTGCCACCCGCATCCAATCTGGACGAGCAGACCCAGACGGATG
CCGGTTTGTTGCCACTACCTCCACCGCCGACAGCCTATCCCAGTGTTGAG
TACCTTCAGTCCTTGGCCCCACTAGCCTTCTTTAATCTGCAGCGAAGCGC
AGAGGCGGAGGAAGCGGAGGACTTGAAATCAGTCGAGCGAAAGGCACCGC
ACAAATGTCGACGTCGTCATGTCCAGGAACCCCTCGAACCGGAATCAGGT
TCCGAACCAGAGGAACACTTGGTGGAGCGACCACGCTCGCGATCGCGTCG
CTCTCGTACCCGCAGTGCTACCCAGCCATTGGATGAAGACTACGACGACG
ATCAGCCCAAGACGGTTGCTCAAGCAGGACGGAATTTTGCCTCCGCCTGC
AGCCTGGAACTGGTTAACATTATCAACCAGCTGACGCACTATGTTCGAGG
TGAAGCAATGGAGCCTCAACAGGCGACACGTAATATATCAGCACTGGTGA
TCCTCTTCATCGCGATCACGCTCGCAGTTTTGGTATTCCTGTTAACGGGG
CGGCAGGTGCACACCCATCATTGGGACTACTTTAATCCGCCCGGGAACGA
TCATGGAAGGCAGACGTGAGGGACTGTGGGCAGTCCCATCCTGGTTTTGT
TATCCTTTGGAGCGGTATTGCATTTTGGAGCATCGAATCTGGCCAAGATA
CTTGGCGGGATGAAGAAACGAATTTAAACGCGGCCAGGTGTCCGCTCGAA
ACTTGAAGGCCTTAATGATACTAACAAGAAATTACTTTAGGAATGAGGTG
CGCCAATGGGGGCGGCGTTGGGCAGGGGCGTGCCCGTGCTACTAGTCACA
CAAAACAATCGAAACCAGAATCCCAGTTCAATGACCCATCATCACACACA
TACCGACATCTAACTTGTACTAACCAGAAATATAGAGGGAACATTTTTCA
ACGTTGTCTACCAACGATATAGAAATCTATATGGCAGAGCATAGCAACAG
AAGCAACGATCATGTATTAACTATTTACTTAACTCATGCTATGTACATAC
ATACGACGTTCTCTGTTTCTTGCGAGGAGGGGGCGAGGACCACTAATAAG
AACTTATTTTGTTTGCTCATCTTTTCTACCACGTAAGGCAAAGCGAGAGA
TTCAATTGTTAAACATATTGTTGTTTAATTTAGATCAAAACGTAGGAATT
AATATACAAAACATACAATCTTTTTCATTGAATTCATTTGAACGTTATAA
CTTGAAATGCGAGTACTTAGCCAGAAAGTGAACATATATATAGAAGCGTA
TTTTCAATAAAGCAAAATTATTTAAAATAAAAAAAAAAAAAAAAAA

HL05638.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32355-RA 2981 CG32355-RA 1..2981 1..2981 14905 100 Plus
Nelf-E-RA 1257 Nelf-E-RA 1051..1257 2981..2775 1035 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8588663..8591643 1..2978 14450 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8596640..8599620 1..2981 14905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8589740..8592720 1..2981 14905 100 Plus
Blast to na_te.dros performed 2019-03-16 12:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 647..762 928..1045 117 61.5 Plus

HL05638.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:29 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8588663..8591643 1..2978 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:43 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG32355-RA 1..2166 104..2269 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:01 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RI 3606..5874 1..2269 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:40:09 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RK 5127..7395 1..2269 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:56 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG32355-RA 1..2166 104..2269 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:19 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RK 5127..7395 1..2269 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:11 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG32355-RA 1..2978 1..2978 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:01 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RI 5339..8316 1..2978 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:40:09 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RK 5561..8538 1..2978 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:56 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG32355-RA 1..2978 1..2978 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:19 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
CG43078-RK 5561..8538 1..2978 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:29 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8596640..8599617 1..2978 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:29 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8596640..8599617 1..2978 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:29 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8596640..8599617 1..2978 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:40:09 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8589740..8592717 1..2978 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:11 Download gff for HL05638.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8589740..8592717 1..2978 100   Plus

HL05638.hyp Sequence

Translation from 0 to 2268

> HL05638.hyp
ADSYDQGEFEVEVSTQTDPLPDDFVCEEFEITEDMKIIEPRRSNGSANKT
LEDLLRSVEAAQEQDEVDGARVLSEDEQLAKGLQRFRDANQRSMSERSRA
SSQADRSKSLSRPQTPSSAVIIERRVPTPSLTVGEDDATVQASLIVRPIS
AADLIDDDLRREEEELRREGLLSDSSVQSKSDVEDEHGEVALSDYAASTA
DLDAAVEQLQQAQLESDYESKLEDDEVERTLRDSEYEEEKFSEQEEEQET
TKLEKELTEQELEEALEKELQEAMEKELSDYRQKEKEQESEQEQAFSEEE
LAASEIDYHQSEEEQATSEVGYHPSEDEHPLSDGEQPLSEEEHTLSDTEH
TPTEPETQKVEETIHKSTASEPTEAEVELKFVATLPTEPAFGDKEEEPEE
PPLPPPRRKSTTALETIATTALTIAEQYSRELTPIQTVQSAPEPQFPSRL
AELEVERLRVHALQAGQIQVSQLHGNQVKADDLQCKSGQLVVQNIELPPG
FIDDIVERVQREQRPSLLTTETQTSRQASSEPATSEKELPVKPPRHSKTT
EQVPPASNLDEQTQTDAGLLPLPPPPTAYPSVEYLQSLAPLAFFNLQRSA
EAEEAEDLKSVERKAPHKCRRRHVQEPLEPESGSEPEEHLVERPRSRSRR
SRTRSATQPLDEDYDDDQPKTVAQAGRNFASACSLELVNIINQLTHYVRG
EAMEPQQATRNISALVILFIAITLAVLVFLLTGRQVHTHHWDYFNPPGND
HGRQT*

HL05638.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG43078-PM 2428 CG43078-PM 1674..2428 1..755 3816 100 Plus
CG43078-PL 2514 CG43078-PL 1760..2514 1..755 3816 100 Plus
CG43078-PK 2464 CG43078-PK 1710..2464 1..755 3816 100 Plus
CG43078-PJ 2509 CG43078-PJ 1755..2509 1..755 3816 100 Plus
CG43078-PI 1957 CG43078-PI 1203..1957 1..755 3816 100 Plus

HL05638.pep Sequence

Translation from 103 to 2268

> HL05638.pep
MKIIEPRRSNGSANKTLEDLLRSVEAAQEQDEVDGARVLSEDEQLAKGLQ
RFRDANQRSMSERSRASSQADRSKSLSRPQTPSSAVIIERRVPTPSLTVG
EDDATVQASLIVRPISAADLIDDDLRREEEELRREGLLSDSSVQSKSDVE
DEHGEVALSDYAASTADLDAAVEQLQQAQLESDYESKLEDDEVERTLRDS
EYEEEKFSEQEEEQETTKLEKELTEQELEEALEKELQEAMEKELSDYRQK
EKEQESEQEQAFSEEELAASEIDYHQSEEEQATSEVGYHPSEDEHPLSDG
EQPLSEEEHTLSDTEHTPTEPETQKVEETIHKSTASEPTEAEVELKFVAT
LPTEPAFGDKEEEPEEPPLPPPRRKSTTALETIATTALTIAEQYSRELTP
IQTVQSAPEPQFPSRLAELEVERLRVHALQAGQIQVSQLHGNQVKADDLQ
CKSGQLVVQNIELPPGFIDDIVERVQREQRPSLLTTETQTSRQASSEPAT
SEKELPVKPPRHSKTTEQVPPASNLDEQTQTDAGLLPLPPPPTAYPSVEY
LQSLAPLAFFNLQRSAEAEEAEDLKSVERKAPHKCRRRHVQEPLEPESGS
EPEEHLVERPRSRSRRSRTRSATQPLDEDYDDDQPKTVAQAGRNFASACS
LELVNIINQLTHYVRGEAMEPQQATRNISALVILFIAITLAVLVFLLTGR
QVHTHHWDYFNPPGNDHGRQT*

HL05638.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20075-PA 731 GF20075-PA 1..731 1..721 2358 77.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14327-PA 721 GG14327-PA 1..721 1..721 2951 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15315-PA 742 GH15315-PA 1..742 1..721 2129 72.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG43078-PM 2428 CG43078-PM 1708..2428 1..721 3634 100 Plus
CG43078-PL 2514 CG43078-PL 1794..2514 1..721 3634 100 Plus
CG43078-PK 2464 CG43078-PK 1744..2464 1..721 3634 100 Plus
CG43078-PJ 2509 CG43078-PJ 1789..2509 1..721 3634 100 Plus
CG43078-PI 1957 CG43078-PI 1237..1957 1..721 3634 100 Plus
CG43078-PH 2540 CG43078-PH 1820..2540 1..721 3634 100 Plus
CG43078-PG 2455 CG43078-PG 1735..2455 1..721 3634 100 Plus
CG43078-PN 2509 CG43078-PN 1789..2509 1..721 3634 100 Plus
futsch-PF 5495 CG34387-PF 3419..4050 23..652 193 20.7 Plus
futsch-PE 5495 CG34387-PE 3419..4050 23..652 193 20.7 Plus
futsch-PC 5495 CG34387-PC 3419..4050 23..652 193 20.7 Plus
sls-PY 10625 CG1915-PY 5743..6325 56..628 186 20.3 Plus
sls-PS 15481 CG1915-PS 5743..6325 56..628 186 20.3 Plus
sls-PU 15953 CG1915-PU 5743..6325 56..628 186 20.3 Plus
sls-PV 16146 CG1915-PV 5743..6325 56..628 186 20.3 Plus
sls-PT 18017 CG1915-PT 5743..6325 56..628 186 20.3 Plus
sls-PX 18031 CG1915-PX 5743..6325 56..628 186 20.3 Plus
sls-PR 18117 CG1915-PR 5743..6325 56..628 186 20.3 Plus
sls-PQ 18440 CG1915-PQ 5743..6325 56..628 186 20.3 Plus
sls-PP 18468 CG1915-PP 5743..6325 56..628 186 20.3 Plus
futsch-PF 5495 CG34387-PF 1906..2501 30..640 178 21.5 Plus
futsch-PF 5495 CG34387-PF 3622..4227 5..628 178 20.5 Plus
futsch-PE 5495 CG34387-PE 1906..2501 30..640 178 21.5 Plus
futsch-PE 5495 CG34387-PE 3622..4227 5..628 178 20.5 Plus
futsch-PC 5495 CG34387-PC 1906..2501 30..640 178 21.5 Plus
futsch-PC 5495 CG34387-PC 3622..4227 5..628 178 20.5 Plus
ImpE1-PC 1616 CG32356-PC 576..1035 117..597 169 21 Plus
ImpE1-PA 1616 CG32356-PA 576..1035 117..597 169 21 Plus
rudhira-PE 2075 CG43154-PE 1215..1740 40..546 166 22.9 Plus
rudhira-PC 2075 CG43154-PC 1215..1740 40..546 166 22.9 Plus
futsch-PF 5495 CG34387-PF 1955..2570 12..638 164 19.1 Plus
futsch-PE 5495 CG34387-PE 1955..2570 12..638 164 19.1 Plus
futsch-PC 5495 CG34387-PC 1955..2570 12..638 164 19.1 Plus
sls-PY 10625 CG1915-PY 5563..6087 74..639 164 21.7 Plus
sls-PS 15481 CG1915-PS 5563..6087 74..639 164 21.7 Plus
sls-PU 15953 CG1915-PU 5563..6087 74..639 164 21.7 Plus
sls-PV 16146 CG1915-PV 5563..6087 74..639 164 21.7 Plus
sls-PT 18017 CG1915-PT 5563..6087 74..639 164 21.7 Plus
sls-PX 18031 CG1915-PX 5563..6087 74..639 164 21.7 Plus
sls-PR 18117 CG1915-PR 5563..6087 74..639 164 21.7 Plus
sls-PQ 18440 CG1915-PQ 5563..6087 74..639 164 21.7 Plus
sls-PP 18468 CG1915-PP 5563..6087 74..639 164 21.7 Plus
ImpE1-PC 1616 CG32356-PC 188..734 41..641 163 19.2 Plus
ImpE1-PA 1616 CG32356-PA 188..734 41..641 163 19.2 Plus
tnc-PD 2819 CG13648-PD 1531..2112 62..628 163 23.8 Plus
tnc-PC 2819 CG13648-PC 1531..2112 62..628 163 23.8 Plus
CG3108-PA 1132 CG3108-PA 199..798 30..667 160 20.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12910-PA 755 GI12910-PA 1..755 1..721 2063 66.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10321-PA 701 GL10321-PA 1..701 1..721 2221 75.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28190-PA 701 GA28190-PA 1..701 1..721 2223 75.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25069-PA 717 GM25069-PA 1..717 1..721 3092 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14107-PA 721 GD14107-PA 1..721 1..721 3600 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13053-PA 739 GJ13053-PA 1..739 1..721 1971 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18916-PA 703 GK18916-PA 1..703 1..721 2261 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20755-PA 722 GE20755-PA 1..722 1..721 2903 93.2 Plus