Clone HL05773 Report

Search the DGRC for HL05773

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:57
Well:73
Vector:pBS SK-
Associated Gene/TranscriptGgamma30A-RB
Protein status:HL05773.pep: gold
Preliminary Size:1666
Sequenced Size:1524

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3694 2001-01-01 Release 2 assignment
CG18511 2001-01-01 Release 2 assignment
CG3694 2001-10-10 Blastp of sequenced clone
CG3694 2003-01-01 Sim4 clustering to Release 3
Ggamma30A 2008-04-29 Release 5.5 accounting
Ggamma30A 2008-08-15 Release 5.9 accounting
Ggamma30A 2008-12-18 5.12 accounting

Clone Sequence Records

HL05773.complete Sequence

1524 bp (1524 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061031

> HL05773.complete
ATTCGATTGCCAGCACTTTCATCAGCGGAAAAGCCAGAGAGCAGCTAATG
GCCGGACAAAGAGTGAGAAAGCGAGAGCGGAGAGGGAGAGGCAGAACACA
TTCGCTGGTTGGTCTTGGTCTTGGTACCACTCATTCGACACATTTTCCTT
CAGTTTTCCCTCGGCAGCGATACCAGCCGTCGCTTACTTTTTCGTTATTC
TGTTATTGCTGGCCTTTGTTTATTAGTGCGTGTCTTCGCTGCGAGCGGTT
TTCGTAATTGAAACGAGAGCGACATAATTAAATTAAAATATACTCGCACA
CAGTAGCGCACTAGCATCGATAGACGGGCCAACTAATCACATTACCAGCC
ATCAGACATCAAGCCACCAGCCATCAGGCCATCGTCAGTCGGAAACCGAA
ACGCAGACCCGCAACACAAGACTCACAGTTCGCATTGCATACTTTTTGGC
GCGCATCGAAATAAACACACCAATACGTACATCAATACAACACAACAACA
ACAAACACATTCAGGCTCGATTGCTGCGTGAGTGTGAGTGTGCCTGTGTC
TGTGCGAGAGTGCCTTCTAAAGTCGCCCATCCTGCGAAGCGACAAAATTC
ATCAACTCTTGTGTCTGGGGTGGTATGTGGATAAATTTTAGCCGCCATGG
ATCCCAGTGCTCTACAAAACATGGATCGGGACGCATTAAAGAAGCAAATC
GAGAATATGAAATATCAGGCCTCCATGGAGCGCTGGCCGTTATCTAAATC
CATAGCAGAAATGCGCTCGTTCATCGAGGAGAACGAGAAAAATGATCCGT
TGATCAATGCGCCGGATAAGAAGAACAATCCATGGGCCGAAAAGGGCAAA
TGCGTTATTATGTAATATTATCGTAAACCACAGAAATACCGCCATAATTA
TGATAACCAGCCAAACAATAATAATGCAACCCATTCCACGACTCATACCA
CAACAACAAGAACAACAACAGCAACTGGAACAGAAAACAATCCATATACC
TTTGAGGCACAGCCTCAACATCATCAGCAATTAGATACCCCTAGCCAATG
TAGCAGCCAAGTTTTGGGGCAGGATTTGGGTGAATCCCCGGATCTGGTGC
CGGTAGAGATGCAGCACTACAACAACAACTACTACTACTATTACAACTAC
AACTTGAGCTATGAGCCGCCGGTCGATCGGTCGCTGGGCGGCGGGGGCAA
GCGGAGCATTCAACGTCTGCAGCAACTGGTGCGAAGGACGCGGTACGAGC
TGCAGCAATGGCCGCTACTGATGCAGCTGCTCCTGTTCGTCCTTTGGCTA
AATGCCAAGTTCTGGCAGCTGGTCAACGAACAGGTGACCTACCGCCGCAG
GAGGTGGCACTGAGGGGCGAAGGACATCGGGTGTTGCTTGGTATGAGTTC
GATCTAGGCTTAAGTTGTGAAAATTATGCCCACACTCTTACAATCTCATC
TCAATAAAAATAATCAAAATTCGCTGCGTAGTGGAAGCAGCGAACTTCAG
CCAAAAAAAAAAAAAAAAAAAAAA

HL05773.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ggamma30A.o 5280 Ggamma30A.o 30..1533 1..1504 7505 99.9 Plus
Ggamma30A-RC 1847 Ggamma30A-RC 30..1533 1..1504 7505 99.9 Plus
Ggamma30A.k 2286 Ggamma30A.k 30..1533 1..1504 7505 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9290005..9290747 760..1502 3670 99.6 Plus
chr2L 23010047 chr2L 9255549..9256166 1..618 3075 99.8 Plus
chr2L 23010047 chr2L 9271453..9271595 617..759 715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9291056..9291800 760..1504 3725 100 Plus
2L 23513712 2L 9256590..9257207 1..618 3075 99.8 Plus
2L 23513712 2L 9272465..9272607 617..759 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9291056..9291800 760..1504 3725 100 Plus
2L 23513712 2L 9256590..9257207 1..618 3075 99.8 Plus
2L 23513712 2L 9272465..9272607 617..759 715 100 Plus
Blast to na_te.dros performed 2019-03-16 17:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Newton 1510 Dbuz\Newton NEWTON 1510bp 217..255 95..57 123 79.5 Minus
Dbuz\Newton 1510 Dbuz\Newton NEWTON 1510bp 1257..1295 57..95 123 79.5 Plus

HL05773.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:42:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9255549..9256165 1..617 99 -> Plus
chr2L 9271454..9271595 618..759 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:51:16 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 1..219 647..865 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:54 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 1..219 647..865 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
CG43733-RB 1..255 1109..1363 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:47 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 1..219 647..865 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:25 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RJ 1..717 647..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:51:15 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 30..1531 1..1502 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:54 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 30..1531 1..1502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 28..1529 1..1502 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:47 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 30..1531 1..1502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:25 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
Ggamma30A-RC 28..1529 1..1502 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9256590..9257206 1..617 99 -> Plus
2L 9272466..9272607 618..759 100 -> Plus
2L 9291056..9291798 760..1502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9256590..9257206 1..617 99 -> Plus
2L 9272466..9272607 618..759 100 -> Plus
2L 9291056..9291798 760..1502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9256590..9257206 1..617 99 -> Plus
2L 9272466..9272607 618..759 100 -> Plus
2L 9291056..9291798 760..1502 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:48 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9256590..9257206 1..617 99 -> Plus
arm_2L 9272466..9272607 618..759 100 -> Plus
arm_2L 9291056..9291798 760..1502 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:03 Download gff for HL05773.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9256590..9257206 1..617 99 -> Plus
2L 9272466..9272607 618..759 100 -> Plus
2L 9291056..9291798 760..1502 100   Plus

HL05773.pep Sequence

Translation from 646 to 864

> HL05773.pep
MDPSALQNMDRDALKKQIENMKYQASMERWPLSKSIAEMRSFIEENEKND
PLINAPDKKNNPWAEKGKCVIM*

HL05773.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22713-PA 183 GF22713-PA 1..72 1..72 371 98.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25336-PA 72 GG25336-PA 1..72 1..72 370 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13273-PA 72 GH13273-PA 1..72 1..72 368 98.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ggamma30A-PH 72 CG3694-PH 1..72 1..72 381 100 Plus
Ggamma30A-PG 72 CG3694-PG 1..72 1..72 381 100 Plus
Ggamma30A-PF 72 CG3694-PF 1..72 1..72 381 100 Plus
Ggamma30A-PC 72 CG3694-PC 1..72 1..72 381 100 Plus
Ggamma30A-PB 72 CG3694-PB 1..72 1..72 381 100 Plus
Ggamma30A-PA 72 CG3694-PA 1..72 1..72 381 100 Plus
Ggamma30A-PJ 238 CG3694-PJ 1..72 1..72 381 100 Plus
Ggamma30A-PI 64 CG3694-PI 1..64 9..72 340 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17467-PA 217 GI17467-PA 1..69 1..69 358 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26250-PA 72 GL26250-PA 1..72 1..72 370 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17617-PA 182 GA17617-PA 1..72 1..72 370 98.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17419-PA 72 GM17419-PA 1..72 1..72 370 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23592-PA 72 GD23592-PA 1..72 1..72 370 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14472-PA 72 GJ14472-PA 1..72 1..72 368 98.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15075-PA 213 GK15075-PA 1..72 1..72 377 98.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18830-PA 230 GE18830-PA 1..69 1..69 368 100 Plus

HL05773.hyp Sequence

Translation from 1108 to 1362

> HL05773.hyp
MQHYNNNYYYYYNYNLSYEPPVDRSLGGGGKRSIQRLQQLVRRTRYELQQ
WPLLMQLLLFVLWLNAKFWQLVNEQVTYRRRRWH*

HL05773.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ggamma30A-PJ 238 CG3694-PJ 155..238 1..84 467 100 Plus