Clone HL05860 Report

Search the DGRC for HL05860

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:58
Well:60
Vector:pBS SK-
Associated Gene/TranscriptAtg101-RA
Protein status:HL05860.pep: gold
Preliminary Size:1991
Sequenced Size:1874

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7001 2001-01-01 Release 2 assignment
CG7053 2001-01-01 Release 2 assignment
CG7053 2001-10-10 Blastp of sequenced clone
CG7053 2003-01-01 Sim4 clustering to Release 3
CG7053 2008-04-29 Release 5.5 accounting
CG7053 2008-08-15 Release 5.9 accounting
CG7053 2008-12-18 5.12 accounting

Clone Sequence Records

HL05860.complete Sequence

1874 bp (1874 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061033

> HL05860.complete
CTATAAAACAATGTACATTTAATGAGACAGGCAACAATTCAACTATAAAC
ATTACTGTGAGCCAGTAAACATTATCAGAGAACGAAGATCAGACTTAGGA
GGCATAACATAGCAGTTAGGCGATAGTAAGAGATCAAGGGATCCAAAGTC
ACAATACTGACGTAACACTGTATATAGGCAACACACAAACGTAAACCCAA
TCTCAAACTCAAGCCGTAGAAGTTATCGCAATGAACGCGCGTTCGCAGGT
TTTTGATCTGACCATGGAGGGTCGTCAGGTGGACGAGGCGGTGGCCACCA
TTTTTCACACCGTCCTCTTCCACCGCTGCTTGGGCAAGTACATGTACACG
GGCGACGCCCAATACTCGATTGGCACGGTCGGCTACACGGACGTCGATTG
CAACTTCATCGACTTCACCTACGTGTGCTGCACCTCGGACAGCTTGACAC
ACAAGGTGAAGCGGGCCATCAACTCGTTCAGCGAGAAGCTGCGCTCCAAC
GAGAGCTGTGGCTCAGGCCAGATCAGCCTGGAGTTCTTTCAGAAAAAGAA
GAACCGCTGGCCCTTTCCGCAGGAGTCGATCCCATGGGAGGTGTGGACGG
TGCACCTGGATCTGATCAAGCACGAGAACGAGGATGAGAGGCAGCTGTGC
CGCGAGAATGTCTCCGATCTCCTGACCGAAAAGGTCATATACATCACCGA
GCTGATGAATCGGCACGATTACGTGCCCAAAACGCCCAGCCAGAGCGAAC
TGGACCTGATCTTCGACACATCCTTTCCGGACGTGCAGCCGTATTTGTTT
AAGTTTGACTACTCCACCTCGGGCTCGGCTGCACCCTCCATGGGTAACGC
CATGAAGAAGATCATCAAGGAAACGCTCGCAATGTGACGGGCTGTCGGGG
GAACGCAAATCCTCCCATCATTGTGTAGTTTTGGTGGCCACTACTTAGTT
TCTCGCGAGTTAATTTATTAGTACTTTCTTTTTTTTTTTTCAACCTTCTA
CGCCTGGTGTTTCGTTGCCCATGACCAAGGTTGAGTCATAGGCAAGGGTG
ATAGGATGAAACGCGAAGTAAATACAATAATTATTTATGGCATATGACAC
GTCCCTGCTGAACTAGATCGTTTAACATATAGGCTTCGTCTTAATTGTTC
TGCCTTAATAATTTTAGTTGTTATCATTGCTTTAGATATCTAATAGGTTC
CATTGACCACCGCTTGACCCACAAGCATGCTTTGGGTAAATTCTGGACTA
ACATGTCCACGGTACGATTTAAAAGCAGAAGGGAGACTTGCGTAGATGTA
GATAGCCATGGATAGCCAAAAGCAGATGGATGTAGATTGCATAGGCGGCC
CACTATCCAGATCCCACCAAATGTATAAGCTAAATCCCCTTTATCATCCA
TGCAAAACGTTCCAAAAACAAGCTTTGCGCTCCACTAGCAAGCAGTTAGC
TGTCAGTCGAGCAAATATAATGTGTTAATTATATCTTAATCGCCAATGTA
AATAACGAAAACGATGAAAGCTATGAACAGAGCAGAACAGATGAAAAGCA
ACCTTTAACGAATTCAGAACCCATTTAAAATCTTATGTTTAGATCGAGGC
AAGTAGCGGTGAGGCGGTAGAAATGTATGTATAAAAGATTGTGATTGTAC
TTGTAGTGATTAAACTATAGTACGGACTCCATGTATCCATGGATATCCAA
TATGTAGACATGTATGTATGTAAATCAATGTTTATCTATATGTCCAAGCT
ATAAAAGTAAACGATAAATGTACTTTACGACTTAACTAATATTGTAAAAT
CGAATTAAGCGGAATAAATCCTTTGAAGCACACGTTCAAAGTAGAAATGT
AAAAAAAAAAAAAAAAAAAAAAAA

HL05860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7053-RA 1848 CG7053-RA 1..1848 1..1848 9240 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18680793..18682649 1..1850 9010 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18791668..18793519 1..1852 9260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18799766..18801617 1..1852 9260 100 Plus
Blast to na_te.dros performed 2019-03-16 02:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 363..461 1676..1776 149 62.4 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 827..871 990..945 128 78.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2980..3067 1523..1607 116 63.6 Plus

HL05860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:00:01 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18680793..18682649 1..1850 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:56 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..657 231..887 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:56 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..657 231..887 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:16 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..657 231..887 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:49 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..657 231..887 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:16 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
Atg101-RA 1..657 231..887 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:03 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:56 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:16 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..1850 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:49 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7053-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:16 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
Atg101-RA 1..1850 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
X 18791668..18793517 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
X 18791668..18793517 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
X 18791668..18793517 1..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:16 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18685701..18687550 1..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:06 Download gff for HL05860.complete
Subject Subject Range Query Range Percent Splice Strand
X 18799766..18801615 1..1850 100   Plus

HL05860.hyp Sequence

Translation from 230 to 886

> HL05860.hyp
MNARSQVFDLTMEGRQVDEAVATIFHTVLFHRCLGKYMYTGDAQYSIGTV
GYTDVDCNFIDFTYVCCTSDSLTHKVKRAINSFSEKLRSNESCGSGQISL
EFFQKKKNRWPFPQESIPWEVWTVHLDLIKHENEDERQLCRENVSDLLTE
KVIYITELMNRHDYVPKTPSQSELDLIFDTSFPDVQPYLFKFDYSTSGSA
APSMGNAMKKIIKETLAM*

HL05860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Atg101-PA 218 CG7053-PA 1..218 1..218 1160 100 Plus

HL05860.pep Sequence

Translation from 230 to 886

> HL05860.pep
MNARSQVFDLTMEGRQVDEAVATIFHTVLFHRCLGKYMYTGDAQYSIGTV
GYTDVDCNFIDFTYVCCTSDSLTHKVKRAINSFSEKLRSNESCGSGQISL
EFFQKKKNRWPFPQESIPWEVWTVHLDLIKHENEDERQLCRENVSDLLTE
KVIYITELMNRHDYVPKTPSQSELDLIFDTSFPDVQPYLFKFDYSTSGSA
APSMGNAMKKIIKETLAM*

HL05860.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Atg101-PA 218 CG7053-PA 1..218 1..218 1160 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14230-PA 218 GI14230-PA 1..218 1..218 1103 92.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20062-PB 218 GA20062-PB 1..218 1..218 1150 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16314-PA 218 GJ16314-PA 1..218 1..218 1133 95.4 Plus