Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
HL05860.complete Sequence
1874 bp (1874 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061033
> HL05860.complete
CTATAAAACAATGTACATTTAATGAGACAGGCAACAATTCAACTATAAAC
ATTACTGTGAGCCAGTAAACATTATCAGAGAACGAAGATCAGACTTAGGA
GGCATAACATAGCAGTTAGGCGATAGTAAGAGATCAAGGGATCCAAAGTC
ACAATACTGACGTAACACTGTATATAGGCAACACACAAACGTAAACCCAA
TCTCAAACTCAAGCCGTAGAAGTTATCGCAATGAACGCGCGTTCGCAGGT
TTTTGATCTGACCATGGAGGGTCGTCAGGTGGACGAGGCGGTGGCCACCA
TTTTTCACACCGTCCTCTTCCACCGCTGCTTGGGCAAGTACATGTACACG
GGCGACGCCCAATACTCGATTGGCACGGTCGGCTACACGGACGTCGATTG
CAACTTCATCGACTTCACCTACGTGTGCTGCACCTCGGACAGCTTGACAC
ACAAGGTGAAGCGGGCCATCAACTCGTTCAGCGAGAAGCTGCGCTCCAAC
GAGAGCTGTGGCTCAGGCCAGATCAGCCTGGAGTTCTTTCAGAAAAAGAA
GAACCGCTGGCCCTTTCCGCAGGAGTCGATCCCATGGGAGGTGTGGACGG
TGCACCTGGATCTGATCAAGCACGAGAACGAGGATGAGAGGCAGCTGTGC
CGCGAGAATGTCTCCGATCTCCTGACCGAAAAGGTCATATACATCACCGA
GCTGATGAATCGGCACGATTACGTGCCCAAAACGCCCAGCCAGAGCGAAC
TGGACCTGATCTTCGACACATCCTTTCCGGACGTGCAGCCGTATTTGTTT
AAGTTTGACTACTCCACCTCGGGCTCGGCTGCACCCTCCATGGGTAACGC
CATGAAGAAGATCATCAAGGAAACGCTCGCAATGTGACGGGCTGTCGGGG
GAACGCAAATCCTCCCATCATTGTGTAGTTTTGGTGGCCACTACTTAGTT
TCTCGCGAGTTAATTTATTAGTACTTTCTTTTTTTTTTTTCAACCTTCTA
CGCCTGGTGTTTCGTTGCCCATGACCAAGGTTGAGTCATAGGCAAGGGTG
ATAGGATGAAACGCGAAGTAAATACAATAATTATTTATGGCATATGACAC
GTCCCTGCTGAACTAGATCGTTTAACATATAGGCTTCGTCTTAATTGTTC
TGCCTTAATAATTTTAGTTGTTATCATTGCTTTAGATATCTAATAGGTTC
CATTGACCACCGCTTGACCCACAAGCATGCTTTGGGTAAATTCTGGACTA
ACATGTCCACGGTACGATTTAAAAGCAGAAGGGAGACTTGCGTAGATGTA
GATAGCCATGGATAGCCAAAAGCAGATGGATGTAGATTGCATAGGCGGCC
CACTATCCAGATCCCACCAAATGTATAAGCTAAATCCCCTTTATCATCCA
TGCAAAACGTTCCAAAAACAAGCTTTGCGCTCCACTAGCAAGCAGTTAGC
TGTCAGTCGAGCAAATATAATGTGTTAATTATATCTTAATCGCCAATGTA
AATAACGAAAACGATGAAAGCTATGAACAGAGCAGAACAGATGAAAAGCA
ACCTTTAACGAATTCAGAACCCATTTAAAATCTTATGTTTAGATCGAGGC
AAGTAGCGGTGAGGCGGTAGAAATGTATGTATAAAAGATTGTGATTGTAC
TTGTAGTGATTAAACTATAGTACGGACTCCATGTATCCATGGATATCCAA
TATGTAGACATGTATGTATGTAAATCAATGTTTATCTATATGTCCAAGCT
ATAAAAGTAAACGATAAATGTACTTTACGACTTAACTAATATTGTAAAAT
CGAATTAAGCGGAATAAATCCTTTGAAGCACACGTTCAAAGTAGAAATGT
AAAAAAAAAAAAAAAAAAAAAAAA
HL05860.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7053-RA | 1848 | CG7053-RA | 1..1848 | 1..1848 | 9240 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 18680793..18682649 | 1..1850 | 9010 | 99.1 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18791668..18793519 | 1..1852 | 9260 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 18799766..18801617 | 1..1852 | 9260 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 02:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\BuT4 | 1447 | Dbuz\BuT4 BUT4 1447bp | 363..461 | 1676..1776 | 149 | 62.4 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 827..871 | 990..945 | 128 | 78.3 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2980..3067 | 1523..1607 | 116 | 63.6 | Plus |
HL05860.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:00:01 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 18680793..18682649 | 1..1850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:56 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..657 | 231..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:56 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..657 | 231..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:16 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..657 | 231..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:49 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..657 | 231..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:16 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg101-RA | 1..657 | 231..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:03 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..1848 | 1..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:56 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..1848 | 1..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:16 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..1850 | 1..1850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:49 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7053-RA | 1..1848 | 1..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:16 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg101-RA | 1..1850 | 1..1850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18791668..18793517 | 1..1850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18791668..18793517 | 1..1850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:00:01 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18791668..18793517 | 1..1850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:16 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18685701..18687550 | 1..1850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:06 Download gff for
HL05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18799766..18801615 | 1..1850 | 100 | | Plus |
HL05860.hyp Sequence
Translation from 230 to 886
> HL05860.hyp
MNARSQVFDLTMEGRQVDEAVATIFHTVLFHRCLGKYMYTGDAQYSIGTV
GYTDVDCNFIDFTYVCCTSDSLTHKVKRAINSFSEKLRSNESCGSGQISL
EFFQKKKNRWPFPQESIPWEVWTVHLDLIKHENEDERQLCRENVSDLLTE
KVIYITELMNRHDYVPKTPSQSELDLIFDTSFPDVQPYLFKFDYSTSGSA
APSMGNAMKKIIKETLAM*
HL05860.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg101-PA | 218 | CG7053-PA | 1..218 | 1..218 | 1160 | 100 | Plus |
HL05860.pep Sequence
Translation from 230 to 886
> HL05860.pep
MNARSQVFDLTMEGRQVDEAVATIFHTVLFHRCLGKYMYTGDAQYSIGTV
GYTDVDCNFIDFTYVCCTSDSLTHKVKRAINSFSEKLRSNESCGSGQISL
EFFQKKKNRWPFPQESIPWEVWTVHLDLIKHENEDERQLCRENVSDLLTE
KVIYITELMNRHDYVPKTPSQSELDLIFDTSFPDVQPYLFKFDYSTSGSA
APSMGNAMKKIIKETLAM*
HL05860.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg101-PA | 218 | CG7053-PA | 1..218 | 1..218 | 1160 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI14230-PA | 218 | GI14230-PA | 1..218 | 1..218 | 1103 | 92.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20062-PB | 218 | GA20062-PB | 1..218 | 1..218 | 1150 | 97.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16314-PA | 218 | GJ16314-PA | 1..218 | 1..218 | 1133 | 95.4 | Plus |