Clone HL05936 Report

Search the DGRC for HL05936

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:59
Well:36
Vector:pBS SK-
Associated Gene/TranscriptNeos-RA
Protein status:HL05936.pep: gold
Preliminary Size:1225
Sequenced Size:1253

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8614 2001-01-01 Release 2 assignment
CG8614 2002-12-11 Blastp of sequenced clone
CG8614 2003-01-01 Sim4 clustering to Release 3
Neos 2008-04-29 Release 5.5 accounting
Neos 2008-08-15 Release 5.9 accounting
Neos 2008-12-18 5.12 accounting

Clone Sequence Records

HL05936.complete Sequence

1253 bp (1253 high quality bases) assembled on 2002-12-11

GenBank Submission: AF160904

> HL05936.complete
TTTCGGGTTTGTGTGCAGTAGAAAGCTTCAAATATCTATGTCTGATCCAG
GAAGCGCCGGCTACAACATAACCAAGGATCCGGCCCTGGCAAAGAGTCGA
ATCTTCTTGGGCAACCTGCCGGTTTGCACGCGCGAGGAGCTGGTGAGCAT
TTGCCAGCCATATGGCAAAGTGCTCGGTTCGATGGTCCAGAAGAACTACG
GATTCGTGCAGTTTGAAACGGAGGAGCTGGCCAATAAAGCCGCCTCCGCC
CTGCACAAGTCCACTTTTAAGCAAAACATGCTCACCGTACGCAACGCCAG
CATTAAATCGAAGGCGGCCAATGCTATCGCCAAAAGAAATTCAAATCAAG
GAGGCCAGGTGACAGTTCAGGGTGGACTTGTGATGTCAGCGGCGGCAGCG
GCAGCAGGTCAACCCCTCATCAATGATTGCGAGATCATAGTCCAAAATCG
CGAGAATACCAAATACGCAGAATACATTGAGGAGCGGCTAAAGAATTCCA
GTCTGCGCGTGGATGTACTCTTTCCCAACGAGGACGTCTTGCTAGGCAAG
GTCCTGGCCAACATCTCTTCGCGCGGCTGCTTGTATGCGGTATTGGTCAC
GCCGCAGCACGAGGAACACAACAGCATCACAGTAAACATTTTGTATGGCG
TACCCGCTGAGCATCGCAACATGCCGCTGGAGGACGCCATCACCCTGATC
TCCACCGATTTTAGGCTCAAAAAACAGCGCGACGCTGTCGTCTTACCGCC
GTCAACATCCATACACAAGGGACAGCGACGACATCCCCAGGAAATGCAGG
GGCTGCTGGAAAGGCTGGCAGACAATCATCCATTGACCGCGTCGCAGTAC
GAGGTGATTCTTAAGTACCTCGAAGGCGAACGCGAGGAGCAACTGAAGCG
AGAGGTGGGCGAGGCCAATGCTCTGGCCAAGCTAAAAGCTCCCGATCCAG
AGATCGAGCTGCAGAAGAAGATTCTTAGCATCATGAACAAGCCGGCAGTA
ACCGATGTCACCAGCGAGCTCATGTATCCCACTTTCGAGGCAGTCAAGGA
GGACAGAAGGCTAATGGAGCTACTTGCTGACGATCGAGTGTTGGCGGCCC
TGGAAAGTGTTTACAACTCGGATCTCAGACAGATTTTAGCCGAGTATTTA
TAGACTACCAATACTTAGTAGTATTCATTAATTTTAGCCATTAAGCATAT
TTAACATTTAATAAATGTAATACCTAATAAAAAAAAAAAAAAAAAAAAAA
AAA

HL05936.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RA 1523 Neos-RA 211..1439 1..1229 6145 100 Plus
mRpL50-RA 777 mRpL50-RA 722..777 1229..1174 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7234519..7235287 460..1228 3845 100 Plus
chr3L 24539361 chr3L 7233997..7234455 1..459 2295 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243129 460..1229 3850 100 Plus
3L 28110227 3L 7241838..7242296 1..459 2295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7235460..7236229 460..1229 3850 100 Plus
3L 28103327 3L 7234938..7235396 1..459 2295 100 Plus
Blast to na_te.dros performed 2019-03-16 12:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 279..344 111 65.2 Plus

HL05936.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:55:11 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7234519..7235287 460..1228 100   Plus
chr3L 7233997..7234455 1..459 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:58 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 38..1153 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:06 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 38..1153 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:33 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 38..1153 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:40 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 38..1153 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:34 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 1..1116 38..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:14 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 147..1374 1..1228 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:06 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 147..1374 1..1228 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:33 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 211..1438 1..1228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:40 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 147..1374 1..1228 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:34 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 211..1438 1..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:11 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7241838..7242296 1..459 100 -> Plus
3L 7242360..7243128 460..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:11 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7241838..7242296 1..459 100 -> Plus
3L 7242360..7243128 460..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:55:11 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7241838..7242296 1..459 100 -> Plus
3L 7242360..7243128 460..1228 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:33 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234938..7235396 1..459 100 -> Plus
arm_3L 7235460..7236228 460..1228 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:26 Download gff for HL05936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7234938..7235396 1..459 100 -> Plus
3L 7235460..7236228 460..1228 100   Plus

HL05936.hyp Sequence

Translation from 0 to 1152

> HL05936.hyp
FGFVCSRKLQISMSDPGSAGYNITKDPALAKSRIFLGNLPVCTREELVSI
CQPYGKVLGSMVQKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNAS
IKSKAANAIAKRNSNQGGQVTVQGGLVMSAAAAAAGQPLINDCEIIVQNR
ENTKYAEYIEERLKNSSLRVDVLFPNEDVLLGKVLANISSRGCLYAVLVT
PQHEEHNSITVNILYGVPAEHRNMPLEDAITLISTDFRLKKQRDAVVLPP
STSIHKGQRRHPQEMQGLLERLADNHPLTASQYEVILKYLEGEREEQLKR
EVGEANALAKLKAPDPEIELQKKILSIMNKPAVTDVTSELMYPTFEAVKE
DRRLMELLADDRVLAALESVYNSDLRQILAEYL*

HL05936.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-PB 371 CG8614-PB 1..371 13..383 1862 100 Plus
Neos-PA 371 CG8614-PA 1..371 13..383 1862 100 Plus
fz3-PB 646 CG16785-PB 1..95 13..107 230 49.5 Plus
CG14628-PA 141 CG14628-PA 1..97 13..109 217 45.4 Plus
CG18823-PA 106 CG18823-PA 9..82 27..100 188 48.6 Plus

HL05936.pep Sequence

Translation from 37 to 1152

> HL05936.pep
MSDPGSAGYNITKDPALAKSRIFLGNLPVCTREELVSICQPYGKVLGSMV
QKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNASIKSKAANAIAKR
NSNQGGQVTVQGGLVMSAAAAAAGQPLINDCEIIVQNRENTKYAEYIEER
LKNSSLRVDVLFPNEDVLLGKVLANISSRGCLYAVLVTPQHEEHNSITVN
ILYGVPAEHRNMPLEDAITLISTDFRLKKQRDAVVLPPSTSIHKGQRRHP
QEMQGLLERLADNHPLTASQYEVILKYLEGEREEQLKREVGEANALAKLK
APDPEIELQKKILSIMNKPAVTDVTSELMYPTFEAVKEDRRLMELLADDR
VLAALESVYNSDLRQILAEYL*

HL05936.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23867-PA 366 GF23867-PA 4..366 6..371 1373 73.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14412-PA 371 GG14412-PA 1..371 1..371 1840 92.5 Plus
Dere\GG12822-PA 204 GG12822-PA 1..98 1..97 234 46.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15151-PA 375 GH15151-PA 4..375 1..371 1277 66.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-PB 371 CG8614-PB 1..371 1..371 1862 100 Plus
Neos-PA 371 CG8614-PA 1..371 1..371 1862 100 Plus
fz3-PB 646 CG16785-PB 1..95 1..95 230 49.5 Plus
CG14628-PA 141 CG14628-PA 1..97 1..97 217 45.4 Plus
CG18823-PA 106 CG18823-PA 9..82 15..88 188 48.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12088-PA 378 GI12088-PA 6..378 3..371 1292 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24901-PA 374 GL24901-PA 7..374 9..371 1291 70.7 Plus
Dper\GL18012-PA 144 GL18012-PA 8..87 134..228 192 45.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21209-PA 374 GA21209-PA 7..374 9..371 1292 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14827-PA 370 GM14827-PA 1..370 1..371 1909 97 Plus
Dsec\GM18998-PA 141 GM18998-PA 1..98 1..98 219 42.9 Plus
Dsec\GM19114-PA 141 GM19114-PA 1..98 1..98 219 42.9 Plus
Dsec\GM19098-PA 186 GM19098-PA 1..95 1..95 218 47.4 Plus
Dsec\GM19104-PA 117 GM19104-PA 7..91 7..91 207 44.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14001-PA 347 GD14001-PA 1..347 1..371 1740 90.8 Plus
Dsim\GD16527-PA 162 GD16527-PA 1..96 1..96 215 45.8 Plus
Dsim\GD16533-PA 183 GD16533-PA 1..91 1..91 213 48.4 Plus
Dsim\GD16464-PA 184 GD16464-PA 1..103 1..101 212 44.7 Plus
Dsim\GD16538-PA 121 GD16538-PA 7..91 7..91 206 45.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13359-PA 375 GJ13359-PA 6..375 3..371 1397 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13148-PA 371 GK13148-PA 6..371 3..371 1339 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21602-PA 371 GE21602-PA 1..371 1..371 1853 93 Plus
Dyak\GE16652-PA 105 GE16652-PA 7..97 7..97 199 41.8 Plus
Dyak\GE16653-PA 111 GE16653-PA 7..97 7..97 196 41.8 Plus