Clone HL07758 Report

Search the DGRC for HL07758

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:77
Well:58
Vector:pBS SK-
Associated Gene/TranscriptVha44-RA
Protein status:HL07758.pep: gold
Preliminary Size:1554
Sequenced Size:1428

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8048 2001-01-01 Release 2 assignment
CG8048 2001-10-10 Blastp of sequenced clone
CG8048 2003-01-01 Sim4 clustering to Release 3
Vha44 2008-04-29 Release 5.5 accounting
Vha44 2008-08-15 Release 5.9 accounting
Vha44 2008-12-18 5.12 accounting

Clone Sequence Records

HL07758.complete Sequence

1428 bp (1428 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061038

> HL07758.complete
CGACATAGAAGCACGTCAGCATGTGGCACAACCGGAGAAAGTAGGAAAAA
CAAACGGAGTAGAGGAAAAGCCCAACAAAAAAAAAAAACGAACGACGGCC
AGGGAAAAATGCCAAAAAACCTGGTGGGAAAGTTCCTAACCATTCTGTTG
AGACGCAAGGAGTGCTAGGATCAAGTGTTTGTCCATCAAGATGATGTCGG
AATACTGGATTATCTCGGCCCCTGGCGACAAGACCTGCCAGCAGACGTAC
GACACGATGAACAATCTGACCAGCAAGCAACACAACCTGTGCAATAACTA
CAAGTTCCATATTCCAGATCTTAAGGTGGGCACCCTCGACCAACTGGTGG
GCCTCTCCGACGATCTGGGCAAACTGGACACCTATGTGGAGCAGATCACC
CGCAAGGTGGCCAACTATCTGGGCGAGGTGCTCGAGGATCAGCGGGACAA
GCTGCACGAGAACCTGATGGCCAACAACACCGAACTACCCCAGTACTTGA
CCCGCTTCCAATGGGACATGGCCAAGTATCCGATCAAGCAGTCGCTGCGC
AACATCGCCGACATTATCTCCAAGCAGATCGGTCAGATCGATGGCGATTT
GAAGACCAAGTCGCAGGCCTATAACAACCTCAAGGGAAATCTGCAGAATC
TGGAAAAGAAGAAGACTGGCAGTCTGCTGACCAGGAATCTGGCTGATTTG
GTCAAGAAGGAGCACTTCATCCTGGACTCGGAGTACCTGACCACCCTGCT
GGTCATTGTACCCAAGGTCATGGCTAATGACTGGCTGACCAACTACGAGA
AGATCACCGACATGATCGTGCCCCGCTCGTCGCAGCTCATCCAGGAGGAC
GCCGACTACTGCCTGTTCAACGTGACGCTCTTCAAGAAGGTTGCCGAGGA
GTTTAAGCTGCATGCCCGCGAGCGCAAGTTCATTGTGCGCGACTTTGTGT
ACAACGAGGAGGAGCTGGCTGCCGGCAAGAACGAGATGACCAAGCTGATG
ACGGACAAGAAGAAGCAGTTTGGTCCTTTGGTTCGTTGGCTGAAGGTGAA
CTTCAGCGAGGCCTTCTGCGCCCTCATCCACGTCAAGGCGCTGCGCGTGT
TTGTGGAATCCGTGCTGAGATACGGACTGCCTGTTAACTTCCAGGCCATC
TTGATCGAGCCCAACAAGAAGAGCGTGAAGCGTCTGCGCGATGTGCTCAA
CCAGCTGTATGGTCACTTGGATGGCGCCTCCGCCGGCGGTGCTGTCAGCA
GTGCTGATAACGTAGACATCCCCGGCCTGGGCTTTGGCCAGTCCGAATAC
TTCCCCTATGTGTTCTACAAGGTCAACATCGATATGGTGGAGCAGGCCAA
GGTCTAAGATCGCCCGTCGCCCCCAACATTGCATACATCCAGCCACACAA
AATACACTTTAAAAAAAAAAAAAAAAAA

HL07758.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 2616 Vha44-RB 47..1474 1..1428 7095 99.7 Plus
Vha44-RE 3871 Vha44-RE 1841..2789 480..1428 4700 99.6 Plus
Vha44-RC 2778 Vha44-RC 688..1636 480..1428 4700 99.6 Plus
Vha44-RE 3871 Vha44-RE 18..496 1..479 2395 100 Plus
Vha44-RC 2778 Vha44-RC 47..525 1..479 2395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12213810..12214066 1022..766 1285 100 Minus
chr2R 21145070 chr2R 12214292..12214478 666..480 920 99.5 Minus
chr2R 21145070 chr2R 12221084..12221265 182..1 880 98.9 Minus
chr2R 21145070 chr2R 12220340..12220496 479..323 755 98.7 Minus
chr2R 21145070 chr2R 12213231..12213382 1410..1259 745 99.3 Minus
chr2R 21145070 chr2R 12220582..12220726 327..183 725 100 Minus
chr2R 21145070 chr2R 12213453..12213593 1258..1118 705 100 Minus
chr2R 21145070 chr2R 12214128..12214227 766..667 500 100 Minus
chr2R 21145070 chr2R 12213651..12213748 1119..1022 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 1022..766 1285 100 Minus
2R 25286936 2R 16326974..16327160 666..480 935 100 Minus
2R 25286936 2R 16333780..16333961 182..1 910 100 Minus
2R 25286936 2R 16325895..16326064 1428..1259 805 98.2 Minus
2R 25286936 2R 16333034..16333190 479..323 785 100 Minus
2R 25286936 2R 16333276..16333420 327..183 725 100 Minus
2R 25286936 2R 16326135..16326275 1258..1118 705 100 Minus
2R 25286936 2R 16326810..16326909 766..667 500 100 Minus
2R 25286936 2R 16326333..16326430 1119..1022 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16327691..16327947 1022..766 1285 100 Minus
2R 25260384 2R 16328173..16328359 666..480 935 100 Minus
2R 25260384 2R 16334979..16335160 182..1 910 100 Minus
2R 25260384 2R 16327094..16327263 1428..1259 805 98.2 Minus
2R 25260384 2R 16334233..16334389 479..323 785 100 Minus
2R 25260384 2R 16334475..16334619 327..183 725 100 Minus
2R 25260384 2R 16327334..16327474 1258..1118 705 100 Minus
2R 25260384 2R 16328009..16328108 766..667 500 100 Minus
2R 25260384 2R 16327532..16327629 1119..1022 490 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:55:21 has no hits.

HL07758.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:56:06 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12221084..12221265 1..182 98   Minus
chr2R 12213231..12213382 1259..1410 99 <- Minus
chr2R 12213453..12213591 1120..1258 100 <- Minus
chr2R 12213651..12213748 1022..1119 100 <- Minus
chr2R 12213811..12214066 766..1021 100 <- Minus
chr2R 12214129..12214227 667..765 100 <- Minus
chr2R 12214292..12214478 480..666 99 <- Minus
chr2R 12220340..12220493 326..479 98 <- Minus
chr2R 12220584..12220726 183..325 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:05 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 1..1167 191..1357 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:50 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 1..1167 191..1357 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:10 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 1..1167 191..1357 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:43 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 1..1167 191..1357 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:49:13 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 1..1167 191..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:55 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 18..1427 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:50 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 18..1427 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:10 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 22..1431 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:43 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 18..1427 1..1410 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:49:13 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 22..1431 1..1410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:56:06 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16326135..16326273 1120..1258 100 <- Minus
2R 16326333..16326430 1022..1119 100 <- Minus
2R 16325913..16326064 1259..1410 100 <- Minus
2R 16326493..16326748 766..1021 100 <- Minus
2R 16326811..16326909 667..765 100 <- Minus
2R 16326974..16327160 480..666 100 <- Minus
2R 16333034..16333187 326..479 100 <- Minus
2R 16333278..16333420 183..325 100 <- Minus
2R 16333780..16333961 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:56:06 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16326135..16326273 1120..1258 100 <- Minus
2R 16326333..16326430 1022..1119 100 <- Minus
2R 16325913..16326064 1259..1410 100 <- Minus
2R 16326493..16326748 766..1021 100 <- Minus
2R 16326811..16326909 667..765 100 <- Minus
2R 16326974..16327160 480..666 100 <- Minus
2R 16333034..16333187 326..479 100 <- Minus
2R 16333278..16333420 183..325 100 <- Minus
2R 16333780..16333961 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:56:06 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16326135..16326273 1120..1258 100 <- Minus
2R 16326333..16326430 1022..1119 100 <- Minus
2R 16325913..16326064 1259..1410 100 <- Minus
2R 16326493..16326748 766..1021 100 <- Minus
2R 16326811..16326909 667..765 100 <- Minus
2R 16326974..16327160 480..666 100 <- Minus
2R 16333034..16333187 326..479 100 <- Minus
2R 16333278..16333420 183..325 100 <- Minus
2R 16333780..16333961 1..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:10 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12220539..12220692 326..479 100 <- Minus
arm_2R 12220783..12220925 183..325 100 <- Minus
arm_2R 12221285..12221466 1..182 100   Minus
arm_2R 12213418..12213569 1259..1410 100 <- Minus
arm_2R 12213640..12213778 1120..1258 100 <- Minus
arm_2R 12213838..12213935 1022..1119 100 <- Minus
arm_2R 12213998..12214253 766..1021 100 <- Minus
arm_2R 12214316..12214414 667..765 100 <- Minus
arm_2R 12214479..12214665 480..666 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:59 Download gff for HL07758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16334233..16334386 326..479 100 <- Minus
2R 16327692..16327947 766..1021 100 <- Minus
2R 16328010..16328108 667..765 100 <- Minus
2R 16328173..16328359 480..666 100 <- Minus
2R 16334477..16334619 183..325 100 <- Minus
2R 16334979..16335160 1..182 100   Minus
2R 16327112..16327263 1259..1410 100 <- Minus
2R 16327334..16327472 1120..1258 100 <- Minus
2R 16327532..16327629 1022..1119 100 <- Minus

HL07758.hyp Sequence

Translation from 190 to 1356

> HL07758.hyp
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKV*

HL07758.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-PB 388 CG8048-PB 1..388 1..388 2008 100 Plus
Vha44-PA 388 CG8048-PA 1..388 1..388 2008 100 Plus
Vha44-PC 442 CG8048-PC 1..442 1..388 1895 86.2 Plus
Vha44-PF 836 CG8048-PF 546..836 98..388 1490 100 Plus
Vha44-PE 836 CG8048-PE 546..836 98..388 1490 100 Plus
Vha44-PF 836 CG8048-PF 1..100 1..100 516 97 Plus

HL07758.pep Sequence

Translation from 190 to 1356

> HL07758.pep
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKV*

HL07758.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11269-PA 388 GF11269-PA 1..388 1..388 2039 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22273-PA 441 GG22273-PA 1..441 1..388 2004 87.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21923-PA 792 GH21923-PA 501..792 98..388 1495 95.9 Plus
Dgri\GH21923-PA 792 GH21923-PA 1..100 1..100 504 92 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-PB 388 CG8048-PB 1..388 1..388 2008 100 Plus
Vha44-PA 388 CG8048-PA 1..388 1..388 2008 100 Plus
Vha44-PC 442 CG8048-PC 1..442 1..388 1895 86.2 Plus
Vha44-PF 836 CG8048-PF 546..836 98..388 1490 100 Plus
Vha44-PE 836 CG8048-PE 546..836 98..388 1490 100 Plus
Vha44-PF 836 CG8048-PF 1..100 1..100 516 97 Plus
Vha44-PE 836 CG8048-PE 1..100 1..100 516 97 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19629-PA 664 GI19629-PA 374..664 98..388 1506 96.2 Plus
Dmoj\GI19629-PA 664 GI19629-PA 1..96 2..97 513 96.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11349-PA 388 GL11349-PA 1..388 1..388 2003 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20788-PA 448 GA20788-PA 157..448 97..388 1505 96.2 Plus
Dpse\GA20788-PA 448 GA20788-PA 1..96 1..96 496 93.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20063-PA 388 GM20063-PA 1..388 1..388 2075 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25545-PA 388 GD25545-PA 1..388 1..388 2075 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14996-PA 704 GJ14996-PA 410..704 94..388 1524 95.9 Plus
Dvir\GJ14996-PA 704 GJ14996-PA 1..100 1..100 513 93 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21692-PA 752 GK21692-PA 463..752 99..388 1525 96.6 Plus
Dwil\GK21692-PA 752 GK21692-PA 1..100 1..100 519 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14069-PA 513 GE14069-PA 222..513 97..388 1548 99.3 Plus
Dyak\GE14069-PA 513 GE14069-PA 17..113 1..97 533 100 Plus