Clone HL07789 Report

Search the DGRC for HL07789

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:77
Well:89
Vector:pBS SK-
Associated Gene/TranscriptObp19d-RA
Protein status:HL07789.pep: gold
Preliminary Size:1297
Sequenced Size:1138

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1668 2001-01-01 Release 2 assignment
CG1670 2001-01-01 Release 2 assignment
CG11734 2001-01-01 Release 2 assignment
CG11738 2001-01-01 Release 2 assignment
CG11748 2001-01-01 Release 2 assignment
CG1668 2002-05-17 Blastp of sequenced clone
CG1668 2003-01-01 Sim4 clustering to Release 3
Pbprp2 2008-04-29 Release 5.5 accounting
Pbprp2 2008-08-15 Release 5.9 accounting
Pbprp2 2008-12-18 5.12 accounting

Clone Sequence Records

HL07789.complete Sequence

1138 bp (1138 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118484

> HL07789.complete
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTG
ATCGATTTAATTACAAGCGGGATTTCTCATCTCTCATTTTGCATTTAGCA
TTTTGCATTTTCATTTCCATTTCCACTAGCCATAGCCATTCCCAATTCTA
TATCCCCGGCATTTGCAGCGATTTCATGCCAGTCACCAATTAAGCAGGTA
AGTGGAGATCGGTGGGCCATCTCATCTGGCAGCGGCAGTTCCAGCGGGGT
GTCACTCGTTCACACGATGCCCAGTCGAGGGCATCTCCGCCGGATTCCGT
CCCATCCCGTCCAGAGCGGCGGAGTGAAGTGGAGTGCCATGTGCCATGTG
CTGCCCATGTAGTTCATAATTGCGCGTAATTGCCGGAGCTGCTTGAGACG
CAGCTGGAGATCGGCGATGGATCCGATCTGCCAAATCAATCACGGGACTC
GGCTTAGGCAATAGCTCCTATAAAACGCCGACGTTGCCGGCGATTCGCAT
CCAAGTCAGAGTTCGCACGTCGCGCAGTTCAATCGCAAATCGAAATGTCG
CATCTGGTTCACCTGACCGTCCTGCTCCTAGTGGGCATCCTCTGCCTGGG
CGCCACCAGCGCCAAGCCGCACGAGGAGATCAACAGGGACCACGCCGCCG
AGCTGGCCAACGAGTGCAAGGCTGAGACGGGAGCCACCGATGAGGATGTG
GAGCAGCTGATGAGCCACGACCTGCCCGAGAGACACGAGGCCAAGTGCCT
GCGCGCCTGCGTGATGAAAAAGCTGCAGATAATGGATGAATCCGGTAAGC
TGAACAAGGAACACGCCATCGAGTTGGTCAAGGTCATGAGCAAGCACGAT
GCAGAGAAGGAAGACGCTCCCGCCGAGGTGGTGGCCAAGTGCGAGGCCAT
CGAGACACCCGAGGATCATTGCGACGCTGCCTTCGCCTACGAGGAATGCA
TTTACGAGCAAATGAAGGAGCATGGACTCGAGCTGGAGGAGCACTGAGAA
CAGATTTGAGACCCATGACGACCCCCCGTTACTGTATCACAAGCGCCCTT
CTGGAATATAACCATCTTTTTTTTTTATGTGTATACTATGAATTAAGTAC
TTGATAAACTGAGAAACTGCAAAAAAAAAAAAAAAAAA

HL07789.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pbprp2-RA 1161 Pbprp2-RA 28..1102 47..1121 5375 100 Plus
Pbprp2.a 956 Pbprp2.a 1..954 168..1121 4770 100 Plus
Pbprp2-RB 829 Pbprp2-RB 1..770 352..1121 3850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20285151..20285796 47..692 3200 99.7 Plus
chrX 22417052 chrX 20286289..20286490 919..1120 1010 100 Plus
chrX 22417052 chrX 20286088..20286224 782..918 685 100 Plus
chrX 22417052 chrX 20285926..20286015 692..781 450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20419640..20420285 47..692 3230 100 Plus
X 23542271 X 20420778..20420980 919..1121 1015 100 Plus
X 23542271 X 20420577..20420713 782..918 685 100 Plus
X 23542271 X 20420415..20420504 692..781 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20404732..20405377 47..692 3230 100 Plus
X 23527363 X 20405870..20406072 919..1121 1015 100 Plus
X 23527363 X 20405669..20405805 782..918 685 100 Plus
X 23527363 X 20405507..20405596 692..781 450 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:03:41 has no hits.

HL07789.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:04:22 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20286289..20286490 919..1120 100   Plus
chrX 20251377..20251403 1..25 92 -> Plus
chrX 20285124..20285796 26..692 97 -> Plus
chrX 20285927..20286015 693..781 100 -> Plus
chrX 20286088..20286224 782..918 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:30:02 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RB 1..453 545..997 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:12 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RB 1..453 545..997 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:43:15 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 1..453 545..997 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:46 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RB 1..453 545..997 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:26:24 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 1..453 545..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:30:02 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RA 26..1101 44..1120 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:12 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RA 26..1101 44..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:15 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 26..1101 44..1120 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:46 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp2-RA 26..1101 44..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:26:24 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 26..1101 44..1120 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:22 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
X 20420577..20420713 782..918 100 -> Plus
X 20420778..20420979 919..1120 100   Plus
X 20385927..20385953 1..25 92 -> Plus
X 20419613..20420285 26..692 98 -> Plus
X 20420416..20420504 693..781 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:22 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
X 20420577..20420713 782..918 100 -> Plus
X 20420778..20420979 919..1120 100   Plus
X 20385927..20385953 1..25 92 -> Plus
X 20419613..20420285 26..692 98 -> Plus
X 20420416..20420504 693..781 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:22 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
X 20420577..20420713 782..918 100 -> Plus
X 20420778..20420979 919..1120 100   Plus
X 20385927..20385953 1..25 92 -> Plus
X 20419613..20420285 26..692 98 -> Plus
X 20420416..20420504 693..781 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:15 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20256954..20256980 1..25 92 -> Plus
arm_X 20290640..20291312 26..692 98 -> Plus
arm_X 20291443..20291531 693..781 100 -> Plus
arm_X 20291604..20291740 782..918 100 -> Plus
arm_X 20291805..20292006 919..1120 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:05 Download gff for HL07789.complete
Subject Subject Range Query Range Percent Splice Strand
X 20404705..20405377 26..692 98 -> Plus
X 20405508..20405596 693..781 100 -> Plus
X 20405669..20405805 782..918 100 -> Plus
X 20405870..20406071 919..1120 100   Plus
X 20371019..20371045 1..25 92 -> Plus

HL07789.hyp Sequence

Translation from 544 to 996

> HL07789.hyp
MSHLVHLTVLLLVGILCLGATSAKPHEEINRDHAAELANECKAETGATDE
DVEQLMSHDLPERHEAKCLRACVMKKLQIMDESGKLNKEHAIELVKVMSK
HDAEKEDAPAEVVAKCEAIETPEDHCDAAFAYEECIYEQMKEHGLELEEH
*

HL07789.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19d-PB 150 CG1668-PB 1..150 1..150 787 100 Plus
Obp19d-PA 150 CG1668-PA 1..150 1..150 787 100 Plus
Obp28a-PA 143 CG6641-PA 4..142 8..145 244 38.3 Plus

HL07789.pep Sequence

Translation from 544 to 996

> HL07789.pep
MSHLVHLTVLLLVGILCLGATSAKPHEEINRDHAAELANECKAETGATDE
DVEQLMSHDLPERHEAKCLRACVMKKLQIMDESGKLNKEHAIELVKVMSK
HDAEKEDAPAEVVAKCEAIETPEDHCDAAFAYEECIYEQMKEHGLELEEH
*

HL07789.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19417-PA 111 GF19417-PA 23..92 19..88 253 67.1 Plus
Dana\GF22744-PA 143 GF22744-PA 5..142 7..145 192 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19289-PA 150 GG19289-PA 20..150 20..150 610 90.8 Plus
Dere\GG23526-PA 143 GG23526-PA 4..142 8..145 215 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17930-PA 148 GH17930-PA 1..148 1..150 442 58.7 Plus
Dgri\GH10975-PA 143 GH10975-PA 1..143 1..146 228 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19d-PB 150 CG1668-PB 1..150 1..150 787 100 Plus
Obp19d-PA 150 CG1668-PA 1..150 1..150 787 100 Plus
Obp28a-PA 143 CG6641-PA 4..142 8..145 244 38.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16309-PA 145 GI16309-PA 21..145 24..148 361 63.2 Plus
Dmoj\GI17488-PA 143 GI17488-PA 33..142 36..145 200 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26842-PA 149 GL26842-PA 1..145 1..147 375 53.4 Plus
Dper\GL26164-PA 143 GL26164-PA 8..142 12..145 204 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp19d-PA 151 GA14088-PA 1..147 1..147 384 52.4 Plus
Dpse\Obp28a-PA 143 GA19746-PA 8..142 12..145 204 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23031-PA 150 GM23031-PA 1..150 1..150 746 97.3 Plus
Dsec\GM13537-PA 143 GM13537-PA 4..142 8..145 221 36.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Obp19d-PA 150 GD17490-PA 1..150 1..150 652 96.7 Plus
Dsim\Obp28a-PA 112 GD22489-PA 2..111 36..145 203 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Obp19d-PA 148 GJ15645-PA 20..148 22..150 461 70.5 Plus
Dvir\Obp28a-PA 143 GJ15099-PA 33..142 36..145 229 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20147-PA 143 GK20147-PA 4..142 11..149 450 64 Plus
Dwil\GK15340-PA 142 GK15340-PA 32..141 36..145 189 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17881-PA 150 GE17881-PA 20..150 20..150 627 93.9 Plus
Dyak\GE18353-PA 143 GE18353-PA 4..142 8..145 225 37.6 Plus