Clone HL07933 Report

Search the DGRC for HL07933

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:79
Well:33
Vector:pOT2
Associated Gene/Transcriptfau-RA
Protein status:HL07933.pep: gold
Preliminary Size:1114
Sequenced Size:1005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6544 2002-06-07 Blastp of sequenced clone
CG6544 2003-01-01 Sim4 clustering to Release 3
fau 2008-04-29 Release 5.5 accounting
fau 2008-08-15 Release 5.9 accounting
fau 2008-12-18 5.12 accounting

Clone Sequence Records

HL07933.complete Sequence

1005 bp (1005 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119569

> HL07933.complete
ACAACACGCAACGACGATATATCCGAACCAAAATCCAACGAACAATTCTA
TTTGAAAACTCTCAAAGCATCCAAATCTAAAAATCTCAACATGGTTTACG
AAAGTGGATTTACGACCCGCAGAACCTACTCCTCGAGGCCGGTGACAACT
TCCTACGCAGTTACGACTCCACGCTTAGACCTGTGCACGGACAGACCGGG
CTCGCACCGCAGCCGGGCCTCCTCGGACTACTCGTACACCTCGAAGTCGT
CCGTGGAGAAGAGCAGCTACGACTCGAGCAACCCGCACTCGTACCGCCCG
GAGCGCTCCACGTACACGTCGACTGTGGAGAAGACGTCGCGCAGCGGTCC
CGGCGGCTCGTACAACTACAGCACAGAGCGGACCAGCACCACTGGCGCCG
GACCCGGTGGCTACAGCTATTCTTCGACCACCAGCGGCAACCTGCCCGGC
GGCACCAAGTACCGCCACTTCTCCTACCACGTGTAGGAGACGCACAGCGT
CAAAGGATCGGCGTTGGCTGTCCACGGCTTTGAATGTTATGGTGCCCACT
AATACGTCATTGTTCTGAATTTATATATATATATAAATATATACATTTTG
CAAATAATCCACTTAACCCGCTAACCTTGAGTGCCCATATATATATATAT
ATATTTGTATACGAAGTTTTCAATGATGATGTATTTTCGTTTTGACTTGG
ACTAATCACCACTAATGCCCAAATAGTTTCGCATATAGACTAGATTAACC
GAACAAGATCAACAATTTCTGTGTGTATTTGCAACCTTCAAGAAGTCATG
TTAAAACATATTTGTGATACAATAAAATAAACACGGTCTTATCTCAAATG
AACGTAGCATTATATTTTCTTGAAATGAACATATATAGAGGTCGATACGA
TATTCATACTGAAGACACAAATTAGGATAAGGAAATCTAAACCGTTTCTG
TCAAGAAATATATGAGAGTTGTCAACTCTTTTGAACCAAAAAAAAAAAAA
AAAAA

HL07933.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
fau.d 1364 fau.d 378..1364 1..987 4935 100 Plus
fau.j 2101 fau.j 1279..2101 165..987 4115 100 Plus
fau-RC 1029 fau-RC 378..1029 1..652 3260 100 Plus
fau.j 2101 fau.j 68..233 1..166 830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6598717..6599539 987..165 4115 100 Minus
chr3R 27901430 chr3R 6602697..6602861 165..1 825 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10773193..10774019 991..165 4135 100 Minus
3R 32079331 3R 10777177..10777341 165..1 825 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10514024..10514850 991..165 4135 100 Minus
3R 31820162 3R 10518008..10518172 165..1 825 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:42:13 has no hits.

HL07933.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:10 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6598717..6599538 166..987 96 <- Minus
chr3R 6602697..6602861 1..165 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:16 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:23 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:14 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:24 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:19 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RA 1..396 91..486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:11 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 21..672 1..652 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:23 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 28..1014 1..987 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:14 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 34..1020 1..987 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:25 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 21..672 1..652 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:19 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RA 34..1020 1..987 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:10 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10773197..10774018 166..987 100 <- Minus
3R 10777177..10777341 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:10 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10773197..10774018 166..987 100 <- Minus
3R 10777177..10777341 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:10 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10773197..10774018 166..987 100 <- Minus
3R 10777177..10777341 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:14 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6598919..6599740 166..987 100 <- Minus
arm_3R 6602899..6603063 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:14 Download gff for HL07933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10514028..10514849 166..987 100 <- Minus
3R 10518008..10518172 1..165 100   Minus

HL07933.hyp Sequence

Translation from 0 to 485

> HL07933.hyp
TTRNDDISEPKSNEQFYLKTLKASKSKNLNMVYESGFTTRRTYSSRPVTT
SYAVTTPRLDLCTDRPGSHRSRASSDYSYTSKSSVEKSSYDSSNPHSYRP
ERSTYTSTVEKTSRSGPGGSYNYSTERTSTTGAGPGGYSYSSTTSGNLPG
GTKYRHFSYHV*

HL07933.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
fau-PA 131 CG45077-PA 1..131 31..161 695 100 Plus

HL07933.pep Sequence

Translation from 90 to 485

> HL07933.pep
MVYESGFTTRRTYSSRPVTTSYAVTTPRLDLCTDRPGSHRSRASSDYSYT
SKSSVEKSSYDSSNPHSYRPERSTYTSTVEKTSRSGPGGSYNYSTERTST
TGAGPGGYSYSSTTSGNLPGGTKYRHFSYHV*

HL07933.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17091-PA 851 GF17091-PA 158..261 26..130 499 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17266-PA 724 GG17266-PA 1..131 1..131 678 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19567-PA 895 GH19567-PA 158..261 26..130 505 95.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
fau-PA 131 CG45077-PA 1..131 1..131 695 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23863-PA 912 GI23863-PA 158..261 26..130 497 93.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21932-PA 798 GL21932-PA 139..247 21..130 487 89.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19674-PD 130 GA19674-PD 1..130 1..131 583 91.6 Plus
Dpse\GA19674-PF 827 GA19674-PF 139..248 21..131 490 88.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20704-PA 200 GD20704-PA 1..131 1..131 645 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10576-PA 887 GJ10576-PA 139..247 21..130 503 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13394-PA 891 GK13394-PA 158..260 26..130 495 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fau-PA 907 GE24668-PA 158..262 26..130 544 99 Plus