Clone HL07974 Report

Search the DGRC for HL07974

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:79
Well:74
Vector:pOT2
Associated Gene/TranscriptCG1461-RA
Protein status:HL07974.pep: gold
Preliminary Size:2003
Sequenced Size:1969

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1461 2001-01-01 Release 2 assignment
CG1461 2001-11-09 Blastp of sequenced clone
CG1461 2003-01-01 Sim4 clustering to Release 3
CG1461 2008-04-29 Release 5.5 accounting
CG1461 2008-08-15 Release 5.9 accounting
CG1461 2008-12-18 5.12 accounting

Clone Sequence Records

HL07974.complete Sequence

1969 bp (1969 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069305

> HL07974.complete
AACGACTTGAAAGTACTAGCCCATATCAACCATATACCGTGTATCCAAAG
GGAATCCAACGAAAACAAGAATCGTCTGTCCAACACAGTGATTGACCAAA
GATCACAGCTCTAATGCTCGTCTGGAACGATAAACAGGATACAAATTTTT
CATTCATTTGAGCAGAGTGCTCCATTTGCCAGAAATCGGGACCGGAGACA
TCGTCGTAATCAAAAATATTAGCAATATTTGTTTGTGCTTTTTTTTTGTT
TTTGTTTATTTTGATTCGATTTGGTTTGGTTTGGTTTGGCTATTCGATTT
TCTTTCGTTGAATCGGGAAAAGGGCCGGCCTGGTGATAATGCCCAGCAGT
TTTGCCAACGAGAGTCAGTTCCGATACCAGAGCAGCCGCAATCGTGCCAG
CTGCACAAGCCGGAGTCCCAGCGAGCCGGAATCCCCGGCGCCGGTGACGC
CCAATTGCGATGTAGTCGATCAGGCGCTGGCCGAGCTGCAGCTCCAATCG
CAGGACATACGCAAGCAACAGGACCTGGTGGACACCACAGCCACGAGCAG
CAGCAGCCGAAAGCGTTCCGGATGGGAGATAAAGGGCTCCAAGCTATCCC
TTAACACGCACAATCGCATTCGGAACATTGTCGAGTCGCTAAAGATCAAA
CCGAATCCGGAGAAGCCCATGATACCGCTGTCCATTGGTGATCCCACAAC
CTTTGGCAATCTAAAAGCCGCCGATGAGACAATGAAGGCGGTGCTGCATT
CCCTGGAGAGCGGCAAGTACAATGGGTATGCCAGCACCCAGGGTCACGAG
ATAGCCCGCAAAGCGGTGGCCAAATACAGTGCCCACCAGCGTCCCGACGG
AGAGATCGATGCCAACGAGGTGGTGCTGTGCAGCGGCTGCTCCTCCGCCT
TGGAGTACTGCATCCTGGCGCTGGCGGATCGTGGTCAGAATGTTCTGGTG
CCGCGACCGGGTTTCTGTTTGTACTATACGCTGGCCCAGGGCTTGGATAT
CGAGGTGCGCTACTACGATCTTCTGCCCGATCAGCAGTGGCGCGCCGATC
TCGTTCAGCTAGAGAGCCTGATCGATGAGAACACCGCCGCCCTTTTGATC
AACAATCCGAGCAATCCCTGTGGCAGCGTCTTCGATGAGAAGCATCTGCG
CGAGTTGATAGCCATCTGCGAACGCCACTATCTGCCCATCATTGCCGATG
AGATCTATGAGCACTTTGTGTTCCCCGGCTCCAAGCACTTGGCCGTGAGC
AGCCTGACCACGGAGGTTCCAGTTCTCTCCTGTGGCGGGTTGACCAAACG
CTTCCTGGTTCCCGGTTGGCGAATGGGTTGGATCATAGTGCACGATCGCA
AGAATCGTTTGCGCGATGCCATTGTCGGTCTAAAGAACATGTGTGGTCGC
ATTCTGGGCTCCAATACCATCATTCAGGGTGCCCTGCCCGATATCCTGAC
CAAGACACCGCAGTCTTATTTTGACGGCGTGATTGATGTGCTCCACTCGA
ATGCCATGCTGGCCTACAAGATGCTGAAACAGGTGCGTGGCCTCGATCCC
GTAATGCCCAATGGAGCCATGTACATGATGATAGGCGTGAGCATCGAACG
CTTCCCGGAATTCAAGGACGACACCCACTTTGTCCAGGAGATGGTGAATG
AGCAGAGTGTCTTCTGTCTGCCGGGCAGCTGCTTTGAGTACCCGGGATAC
GTGCGGATCGTACTTACTGTGCCCGGGGCAATGATCGAGGAGGCGTGCTC
CAGGATTGCCGAGTTCTGCGATCGCCACTACAAAAAGGAGTCGCGCAATT
TCATTGAGCACGGACTGCTCGACTGCGATGATGTGGCCTTTTGAGCTGGG
AGCAAAACATTTATTAGATATTCTAGACTACAATTTTTATCAAGTGTACA
TAAGTGTATGTATGTATATATACTATATATATATATATATCAATCATTTT
AAAAAAAAAAAAAAAAAAA

HL07974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-RA 2056 CG1461-RA 77..2028 1..1952 9760 100 Plus
CG13404-RB 1482 CG13404-RB 1369..1482 1952..1839 570 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14151800..14152490 1..691 3425 99.7 Plus
chrX 22417052 chrX 14154002..14154517 687..1202 2565 99.8 Plus
chrX 22417052 chrX 14154944..14155397 1497..1950 2270 100 Plus
chrX 22417052 chrX 14154582..14154877 1201..1496 1480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14261247..14261937 1..691 3455 100 Plus
X 23542271 X 14263449..14263964 687..1202 2580 100 Plus
X 23542271 X 14264391..14264846 1497..1952 2280 100 Plus
X 23542271 X 14264029..14264324 1201..1496 1480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14269345..14270035 1..691 3455 100 Plus
X 23527363 X 14271547..14272062 687..1202 2580 100 Plus
X 23527363 X 14272489..14272944 1497..1952 2280 100 Plus
X 23527363 X 14272127..14272422 1201..1496 1480 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:54:18 has no hits.

HL07974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:55:31 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14151800..14152486 1..687 93 -> Plus
chrX 14154003..14154517 688..1202 99 -> Plus
chrX 14154584..14154877 1203..1496 100 -> Plus
chrX 14154944..14155353 1497..1906 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:26 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 339..1844 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:24 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 339..1844 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:26 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 339..1844 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:02 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 339..1844 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:07 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 1..1506 339..1844 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:37 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 25..1974 1..1950 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:24 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 25..1974 1..1950 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:26 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 25..1974 1..1950 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:03 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 25..1974 1..1950 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:07 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
CG1461-RA 25..1974 1..1950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:31 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
X 14261247..14261933 1..687 100 -> Plus
X 14263450..14263964 688..1202 100 -> Plus
X 14264031..14264324 1203..1496 100 -> Plus
X 14264391..14264844 1497..1950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:31 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
X 14261247..14261933 1..687 100 -> Plus
X 14263450..14263964 688..1202 100 -> Plus
X 14264031..14264324 1203..1496 100 -> Plus
X 14264391..14264844 1497..1950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:31 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
X 14261247..14261933 1..687 100 -> Plus
X 14263450..14263964 688..1202 100 -> Plus
X 14264031..14264324 1203..1496 100 -> Plus
X 14264391..14264844 1497..1950 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:26 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14155280..14155966 1..687 100 -> Plus
arm_X 14157483..14157997 688..1202 100 -> Plus
arm_X 14158064..14158357 1203..1496 100 -> Plus
arm_X 14158424..14158877 1497..1950 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:08 Download gff for HL07974.complete
Subject Subject Range Query Range Percent Splice Strand
X 14269345..14270031 1..687 100 -> Plus
X 14271548..14272062 688..1202 100 -> Plus
X 14272129..14272422 1203..1496 100 -> Plus
X 14272489..14272942 1497..1950 100   Plus

HL07974.pep Sequence

Translation from 338 to 1843

> HL07974.pep
MPSSFANESQFRYQSSRNRASCTSRSPSEPESPAPVTPNCDVVDQALAEL
QLQSQDIRKQQDLVDTTATSSSSRKRSGWEIKGSKLSLNTHNRIRNIVES
LKIKPNPEKPMIPLSIGDPTTFGNLKAADETMKAVLHSLESGKYNGYAST
QGHEIARKAVAKYSAHQRPDGEIDANEVVLCSGCSSALEYCILALADRGQ
NVLVPRPGFCLYYTLAQGLDIEVRYYDLLPDQQWRADLVQLESLIDENTA
ALLINNPSNPCGSVFDEKHLRELIAICERHYLPIIADEIYEHFVFPGSKH
LAVSSLTTEVPVLSCGGLTKRFLVPGWRMGWIIVHDRKNRLRDAIVGLKN
MCGRILGSNTIIQGALPDILTKTPQSYFDGVIDVLHSNAMLAYKMLKQVR
GLDPVMPNGAMYMMIGVSIERFPEFKDDTHFVQEMVNEQSVFCLPGSCFE
YPGYVRIVLTVPGAMIEEACSRIAEFCDRHYKKESRNFIEHGLLDCDDVA
F*

HL07974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22556-PA 502 GF22556-PA 1..497 1..495 2256 85.5 Plus
Dana\GF23062-PA 417 GF23062-PA 93..382 176..449 230 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17840-PA 508 GG17840-PA 1..508 1..501 2519 93.1 Plus
Dere\GG17186-PA 450 GG17186-PA 126..415 176..449 232 23.5 Plus
Dere\GG17777-PA 574 GG17777-PA 189..540 134..453 170 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12929-PA 483 GH12929-PA 1..477 1..495 2012 77.6 Plus
Dgri\GH19404-PA 417 GH19404-PA 93..382 176..449 228 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-PB 501 CG1461-PB 1..501 1..501 2630 100 Plus
CG1461-PA 501 CG1461-PA 1..501 1..501 2630 100 Plus
CG6950-PD 450 CG6950-PD 126..415 176..449 225 23.5 Plus
CG6950-PB 450 CG6950-PB 126..415 176..449 225 23.5 Plus
CG6950-PA 450 CG6950-PA 126..415 176..449 225 23.5 Plus
CG6950-PC 450 CG6950-PC 126..415 176..449 225 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15439-PA 479 GI15439-PA 14..473 24..495 1967 77.8 Plus
Dmoj\GI22608-PA 417 GI22608-PA 93..382 176..449 229 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14927-PA 501 GL14927-PA 1..501 1..501 2153 82.4 Plus
Dper\GL12368-PA 457 GL12368-PA 69..422 119..449 232 23.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13109-PA 497 GA13109-PA 1..497 1..501 2155 82.6 Plus
Dpse\GA19977-PA 457 GA19977-PA 69..422 119..449 233 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17670-PA 503 GM17670-PA 1..503 1..501 2615 96.6 Plus
Dsec\GM26066-PA 450 GM26066-PA 63..415 119..449 232 23 Plus
Dsec\GM11628-PA 568 GM11628-PA 183..534 134..453 183 25.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17166-PA 395 GD17166-PA 13..395 78..501 1966 87.3 Plus
Dsim\GD20629-PA 450 GD20629-PA 63..415 119..449 231 23 Plus
Dsim\GD17120-PA 575 GD17120-PA 190..541 134..453 184 25.7 Plus
Dsim\GD11952-PA 266 GD11952-PA 97..266 134..294 155 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19064-PA 470 GJ19064-PA 15..469 32..495 1956 77.6 Plus
Dvir\GJ23853-PA 417 GJ23853-PA 93..382 176..449 236 25.1 Plus
Dvir\GJ14820-PA 588 GJ14820-PA 204..586 135..483 209 25.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20156-PA 513 GK20156-PA 1..508 1..498 2067 77.5 Plus
Dwil\GK12747-PA 448 GK12747-PA 124..413 176..449 229 24.6 Plus
Dwil\GK17070-PA 576 GK17070-PA 190..537 133..449 163 25.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17134-PA 500 GE17134-PA 1..500 1..501 2537 93.4 Plus
Dyak\GE10079-PA 450 GE10079-PA 63..415 119..449 230 22.8 Plus
Dyak\GE17071-PA 575 GE17071-PA 190..536 134..449 174 25.5 Plus

HL07974.hyp Sequence

Translation from 338 to 1843

> HL07974.hyp
MPSSFANESQFRYQSSRNRASCTSRSPSEPESPAPVTPNCDVVDQALAEL
QLQSQDIRKQQDLVDTTATSSSSRKRSGWEIKGSKLSLNTHNRIRNIVES
LKIKPNPEKPMIPLSIGDPTTFGNLKAADETMKAVLHSLESGKYNGYAST
QGHEIARKAVAKYSAHQRPDGEIDANEVVLCSGCSSALEYCILALADRGQ
NVLVPRPGFCLYYTLAQGLDIEVRYYDLLPDQQWRADLVQLESLIDENTA
ALLINNPSNPCGSVFDEKHLRELIAICERHYLPIIADEIYEHFVFPGSKH
LAVSSLTTEVPVLSCGGLTKRFLVPGWRMGWIIVHDRKNRLRDAIVGLKN
MCGRILGSNTIIQGALPDILTKTPQSYFDGVIDVLHSNAMLAYKMLKQVR
GLDPVMPNGAMYMMIGVSIERFPEFKDDTHFVQEMVNEQSVFCLPGSCFE
YPGYVRIVLTVPGAMIEEACSRIAEFCDRHYKKESRNFIEHGLLDCDDVA
F*

HL07974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1461-PB 501 CG1461-PB 1..501 1..501 2630 100 Plus
CG1461-PA 501 CG1461-PA 1..501 1..501 2630 100 Plus
CG6950-PD 450 CG6950-PD 126..415 176..449 225 23.5 Plus
CG6950-PB 450 CG6950-PB 126..415 176..449 225 23.5 Plus
CG6950-PA 450 CG6950-PA 126..415 176..449 225 23.5 Plus