Clone HL08006 Report

Search the DGRC for HL08006

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:6
Vector:pOT2
Associated Gene/Transcriptade5-RA
Protein status:HL08006.pep: gold
Preliminary Size:1858
Sequenced Size:1810

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3989 2001-01-01 Release 2 assignment
CG3989 2001-11-09 Blastp of sequenced clone
CG3989 2003-01-01 Sim4 clustering to Release 3
ade5 2008-04-29 Release 5.5 accounting
ade5 2008-08-15 Release 5.9 accounting
ade5 2008-12-18 5.12 accounting

Clone Sequence Records

HL08006.complete Sequence

1810 bp (1810 high quality bases) assembled on 2001-11-09

GenBank Submission: AY095520

> HL08006.complete
ACGAACATCGGAGTTTGCGGATTGTAATAATAGAGCCAAGCGGAGAGAGC
GAAAAAGACAGAGAGAGAGATAGAGAGCGAGAGCGAGAGGGAAGGCACCA
GCGAATATCGAGCATAAAGCAAAGCCCGCAACACGTGAAACAGCCAGCAG
CCAATTGATTTCAATTTCGATTCTTAAAGTGAAGTGACCAACAACGTGCG
ATTAACGAGATGTCCACCACCACAACAGCATCCATAGAGGGCTATAAGCT
CGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGATCTGCCAG
AGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCACCGCCGGC
GATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCTCCAATAC
CACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATTCGCACCG
CCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAAGTGCCAG
ATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTTCGTTCCT
CAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCGCCCAAAC
AGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTGGAGCGAG
GAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGATCGGCCA
AGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTCGAGATTC
TCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACATGAAAGTG
GAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATATCATTGA
TTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTGATGGTCG
ACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGATTTGGAT
ACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTGATATTGT
GCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCTTCCGATA
TATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGGCCTTAAT
GTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAACGTTGCG
CATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTTGTGGCCG
TCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAGCACCAAC
TATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGCAGGTGGA
CGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCCACAGTTC
TCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGGGCTGGGC
AACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACAACTTTAT
CACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAATGCTTAGT
TGCTGGTTATCATAGCTTATGGTGGGAGATATCAGCATTGGATATCAACC
AGGAGGCCATATATAGAGAATCCTTCCCTGATCATTGCCGTTCGGCGATC
ATCCAGGGATCCCATAAAGGTCATCATCAGATCACATACTTTGTTAATTC
TTCTTTCTCCTATTTTTTTTTTTTTTGAAACCAAACATTTTTTTATTAGT
ATTAGGAAAGCATGACTTCAACTTGTTGTACCACGTTCTTGACAGGTTAC
GAACTCGAAATAACAAAAAATAAAAATTACATTTTAAATGTTAAAAAAAA
AAAAAAAAAA

HL08006.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 2132 ade5-RA 225..2016 1..1793 8925 99.9 Plus
ade5.a 1963 ade5.a 171..1959 1..1793 8855 99.7 Plus
CG40801-RA 423 CG40801-RA 58..386 237..569 1445 96 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12648653..12649748 1792..696 5390 99.6 Minus
chrX 22417052 chrX 12650600..12650802 439..237 1015 100 Minus
chrX 22417052 chrX 12651250..12651477 234..1 1015 96.6 Minus
chrU 10048995 chrU 9850172..9850374 439..237 925 97 Minus
chrU 10048995 chrU 2929600..2929802 439..237 910 96.6 Minus
chrU 10048995 chrU 8923744..8923946 237..439 910 96.6 Plus
chrX 22417052 chrX 12650353..12650503 586..436 740 99.3 Minus
chr2L 23010047 chr2L 12452355..12453007 252..904 700 73.8 Plus
chrU 10048995 chrU 6763163..6763378 234..1 685 87.2 Minus
chrU 10048995 chrU 2930228..2930435 234..9 675 87.6 Minus
chrU 10048995 chrU 9898075..9898221 237..383 645 95.9 Plus
chrU 10048995 chrU 8924042..8924189 435..586 620 95.4 Plus
chrX 22417052 chrX 12649815..12649931 697..581 570 99.1 Minus
chrU 10048995 chrU 6762536..6762678 379..237 565 93 Minus
chrU 10048995 chrU 2929374..2929504 569..435 550 95.6 Minus
chrU 10048995 chrU 9897494..9897694 9..234 550 85 Plus
chrU 10048995 chrU 9849976..9850101 569..440 510 94.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12757759..12758855 1793..696 5440 99.9 Minus
X 23542271 X 12760349..12760582 234..1 1170 100 Minus
X 23542271 X 12759711..12759915 439..235 1025 100 Minus
Y 3667352 Y 3059275..3059477 439..237 925 97 Minus
Y 3667352 Y 3231313..3231515 237..439 925 97 Plus
Y 3667352 Y 3267332..3267534 439..237 910 96.6 Minus
U 3151297 U 2460018..2460220 237..439 910 96.6 Plus
X 23542271 X 12759460..12759610 586..436 755 100 Minus
Y 3667352 Y 3059906..3060121 234..1 700 87.6 Minus
Y 3667352 Y 3205124..3205339 1..234 700 87.6 Plus
Y 3667352 Y 3230669..3230884 1..234 700 87.6 Plus
2L 23513712 2L 12453715..12454367 252..904 700 73.8 Plus
Y 3667352 Y 3092358..3092573 234..1 685 87.2 Minus
Ymm 880023 Ymm 632030..632245 234..1 685 87.2 Minus
Y 3667352 Y 3267960..3268167 234..9 675 87.6 Minus
Ymm 880023 Ymm 562058..562204 237..383 645 95.9 Plus
Y 3667352 Y 3267089..3267236 586..435 620 95.4 Minus
U 3151297 U 2460316..2460463 435..586 620 95.4 Plus
X 23542271 X 12758922..12759038 697..581 585 100 Minus
Y 3667352 Y 3059062..3059204 586..440 580 94.6 Minus
Y 3667352 Y 3091728..3091870 379..237 565 93 Minus
Y 3667352 Y 3205824..3205966 237..379 565 93 Plus
Ymm 880023 Ymm 631403..631545 379..237 565 93 Minus
Ymm 880023 Ymm 561477..561677 9..234 550 85 Plus
Y 3667352 Y 3231586..3231711 440..569 510 94.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12765857..12766953 1793..696 5450 99.9 Minus
X 23527363 X 12768447..12768680 234..1 1170 100 Minus
X 23527363 X 12767809..12768013 439..235 1025 100 Minus
Y 3410481 Y 3077783..3077985 237..439 925 97 Plus
Y 3410481 Y 2905745..2905947 439..237 925 97 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12189..12391 439..237 910 96.5 Minus
X 23527363 X 12767558..12767708 586..436 755 100 Minus
Y 3410481 Y 3077199..3077354 79..234 660 94.8 Plus
Y 3410481 Y 3051654..3051809 79..234 660 94.8 Plus
Y 3410481 Y 2906376..2906531 234..79 660 94.8 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12817..12972 234..79 660 94.8 Minus
Y 3410481 Y 2938828..2938983 234..79 645 94.2 Minus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 11946..12093 586..435 630 95.3 Minus
Y 3410481 Y 2905532..2905674 586..440 590 94.5 Minus
X 23527363 X 12767020..12767136 697..581 585 100 Minus
Y 3410481 Y 3052294..3052436 237..379 565 93 Plus
Y 3410481 Y 2938198..2938340 379..237 565 93 Minus
Y 3410481 Y 3078056..3078181 440..569 520 94.6 Plus
2L 23513712 2L 12454066..12454367 603..904 385 75.1 Plus
Y 3410481 Y 3077139..3077207 1..69 285 94.2 Plus
Y 3410481 Y 3051594..3051662 1..69 285 94.2 Plus
Y 3410481 Y 2906523..2906591 69..1 285 94.2 Minus
Y 3410481 Y 2938975..2939043 69..1 285 94.2 Minus
2L 23513712 2L 12453841..12454004 378..541 265 77.4 Plus
Unmapped_scaffold_16 28895 Unmapped_scaffold_16 12964..13024 69..9 260 95 Minus
2L 23513712 2L 12453715..12453803 252..340 175 79.7 Plus
Blast to na_te.dros performed on 2019-03-16 10:04:01 has no hits.

HL08006.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:04:58 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12649816..12649928 584..696 99 <- Minus
chrX 12650356..12650500 439..583 99 <- Minus
chrX 12650601..12650804 235..438 99 <- Minus
chrX 12648653..12649747 697..1792 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:27 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 210..1499 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:14 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 210..1499 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:55:12 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 210..1499 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:50 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 210..1499 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:53:40 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 210..1499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:22 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 37..1827 1..1792 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:13 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 37..1827 1..1792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:12 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 36..1826 1..1792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:50 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 37..1827 1..1792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:53:40 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 36..1826 1..1792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:58 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 697..1792 99 <- Minus
X 12758923..12759035 584..696 100 <- Minus
X 12759463..12759607 439..583 100 <- Minus
X 12759712..12759915 235..438 100 <- Minus
X 12760349..12760582 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:58 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 697..1792 99 <- Minus
X 12758923..12759035 584..696 100 <- Minus
X 12759463..12759607 439..583 100 <- Minus
X 12759712..12759915 235..438 100 <- Minus
X 12760349..12760582 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:58 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
X 12757760..12758854 697..1792 99 <- Minus
X 12758923..12759035 584..696 100 <- Minus
X 12759463..12759607 439..583 100 <- Minus
X 12759712..12759915 235..438 100 <- Minus
X 12760349..12760582 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:12 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12651793..12652887 697..1792 99 <- Minus
arm_X 12652956..12653068 584..696 100 <- Minus
arm_X 12653496..12653640 439..583 100 <- Minus
arm_X 12653745..12653948 235..438 100 <- Minus
arm_X 12654382..12654615 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:55 Download gff for HL08006.complete
Subject Subject Range Query Range Percent Splice Strand
X 12767810..12768013 235..438 100 <- Minus
X 12768447..12768680 1..234 100   Minus
X 12765858..12766952 697..1792 99 <- Minus
X 12767021..12767133 584..696 100 <- Minus
X 12767561..12767705 439..583 100 <- Minus

HL08006.hyp Sequence

Translation from 209 to 1498

> HL08006.hyp
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNA*

HL08006.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-PA 429 CG3989-PA 1..429 1..429 2207 100 Plus
ade5-PB 428 CG3989-PB 1..428 1..429 2187 99.5 Plus
CG40801-PB 142 CG40801-PB 19..122 9..112 524 97.1 Plus

HL08006.pep Sequence

Translation from 209 to 1498

> HL08006.pep
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNA*

HL08006.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20891-PA 426 GF20891-PA 3..426 6..429 2183 95 Plus
Dana\GF20892-PA 194 GF20892-PA 1..159 17..175 722 84.3 Plus
Dana\GF20892-PA 194 GF20892-PA 145..194 380..429 241 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19541-PA 428 GG19541-PA 1..428 1..429 2258 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12574-PA 428 GH12574-PA 3..428 4..429 2089 89.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Paics-PA 429 CG3989-PA 1..429 1..429 2207 100 Plus
Paics-PB 428 CG3989-PB 1..428 1..429 2187 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14693-PA 428 GI14693-PA 1..427 1..428 2159 92.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15026-PA 433 GL15026-PA 12..433 8..429 2161 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17827-PA 426 GA17827-PA 2..426 5..429 2178 95.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11535-PA 428 GM11535-PA 1..428 1..429 2246 98.1 Plus
Dsec\GM26849-PA 370 GM26849-PA 5..366 8..429 1242 57.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15919-PA 428 GD15919-PA 1..428 1..429 2261 98.8 Plus
Dsim\GD23841-PA 413 GD23841-PA 4..408 7..428 1459 64.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16601-PA 430 GJ16601-PA 10..429 9..428 2146 94 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16398-PA 447 GK16398-PA 27..447 9..429 2151 94.3 Plus
Dwil\GK23628-PA 233 GK23628-PA 4..233 178..429 996 76.2 Plus
Dwil\GK17812-PA 155 GK17812-PA 1..155 229..401 644 74.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ade5-PA 428 GE16201-PA 1..428 1..429 2252 98.8 Plus