Clone HL08042 Report

Search the DGRC for HL08042

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:42
Vector:pOT2
Associated Gene/TranscriptwupA-RD
Protein status:HL08042.pep: gold
Preliminary Size:1300
Sequenced Size:950

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7178 2001-01-01 Release 2 assignment
CG7178 2002-06-12 Blastp of sequenced clone
CG7178 2003-01-01 Sim4 clustering to Release 3
wupA 2008-04-29 Release 5.5 accounting
wupA 2008-08-15 Release 5.9 accounting
wupA 2008-12-18 5.12 accounting

Clone Sequence Records

HL08042.complete Sequence

950 bp (950 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122145

> HL08042.complete
TGTGATCGACAGCATAGCCGAATTTTTTTTCTTTTTTTTCTAATTCCTTG
AAGTAACCAAAAACACAAATCAAAATGGCTGATGATGAGGCTAAGAAGGC
TAAACAGGCTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGG
AGGAAGCCTCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAG
AGGAAGAAGAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCT
GAAGAAAGAACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAG
AACGTTGCGGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTG
CAAACAATATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGA
TAAGTTTGATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACG
ATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCC
CTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAA
GGCCGCTGAGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGG
AGTTCACGCTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAG
GGCAAGCCCGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTA
AGTGTCCACACGTCCACTAGTGTCCACTGACCCGTGACTCCCGCCCTAAA
CAATAATTGAAATTATTTACAACAATTATCTGAAGCAATATAATTTATAT
GAATCTATTAATATATATATATATCCGCAAATATATATGCATGTATATAT
CTCGCCATATATATGTGTCCACAATGGATTTGATCAGAAATGAAGTCAAT
AAACAACAACAGCAACAACTAAATTAACTCAAAAAAAAAAAAAAAAAAAA

HL08042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RD 1196 wupA-RD 88..1021 1..934 4670 100 Plus
wupA.f 1379 wupA.f 271..1204 1..934 4670 100 Plus
wupA.c 1252 wupA.c 101..731 1..631 3155 100 Plus
wupA.c 1252 wupA.c 773..1077 630..934 1525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17995045..17995347 930..628 1515 100 Minus
chrX 22417052 chrX 17995994..17996135 629..488 710 100 Minus
chrX 22417052 chrX 18002767..18002897 218..88 655 100 Minus
chrX 22417052 chrX 18002578..18002702 342..218 625 100 Minus
chrX 22417052 chrX 17999825..17999927 443..341 515 100 Minus
chrX 22417052 chrX 18006037..18006089 53..1 265 100 Minus
chrX 22417052 chrX 17996201..17996246 487..442 230 100 Minus
chrX 22417052 chrX 18003930..18003968 90..52 195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18105728..18106034 934..628 1535 100 Minus
X 23542271 X 18106681..18106822 629..488 710 100 Minus
X 23542271 X 18113447..18113577 218..88 655 100 Minus
X 23542271 X 18113258..18113382 342..218 625 100 Minus
X 23542271 X 18110504..18110606 443..341 515 100 Minus
X 23542271 X 18116707..18116759 53..1 265 100 Minus
X 23542271 X 18106888..18106933 487..442 230 100 Minus
X 23542271 X 18114610..18114648 90..52 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18113826..18114132 934..628 1535 100 Minus
X 23527363 X 18114779..18114920 629..488 710 100 Minus
X 23527363 X 18121545..18121675 218..88 655 100 Minus
X 23527363 X 18121356..18121480 342..218 625 100 Minus
X 23527363 X 18118602..18118704 443..341 515 100 Minus
X 23527363 X 18124805..18124857 53..1 265 100 Minus
X 23527363 X 18114986..18115031 487..442 230 100 Minus
X 23527363 X 18122708..18122746 90..52 195 100 Minus
Blast to na_te.dros performed 2019-03-15 22:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1993..2036 874..916 109 75 Plus

HL08042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:08:12 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17995994..17996135 488..629 100 <- Minus
chrX 17996201..17996244 444..487 100 <- Minus
chrX 17999825..17999925 343..443 100 <- Minus
chrX 18002578..18002701 219..342 100 <- Minus
chrX 18002767..18002895 90..218 100 <- Minus
chrX 18003931..18003966 54..89 100 <- Minus
chrX 18006037..18006089 1..53 100   Minus
chrX 17995188..17995345 630..787 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:36:06 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 1..627 75..701 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:07 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 1..627 75..701 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:55 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 1..627 75..701 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:59 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 1..627 75..701 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:19 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 1..627 75..701 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:36:06 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 64..993 1..930 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:06 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 64..993 1..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:55 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 67..996 1..930 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:59 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 64..993 1..930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:19 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 164..1093 1..930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:12 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105732..18106032 630..930 100 <- Minus
X 18106681..18106822 488..629 100 <- Minus
X 18106888..18106931 444..487 100 <- Minus
X 18110504..18110604 343..443 100 <- Minus
X 18113258..18113381 219..342 100 <- Minus
X 18113447..18113575 90..218 100 <- Minus
X 18114611..18114646 54..89 100 <- Minus
X 18116707..18116759 1..53 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:12 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105732..18106032 630..930 100 <- Minus
X 18106681..18106822 488..629 100 <- Minus
X 18106888..18106931 444..487 100 <- Minus
X 18110504..18110604 343..443 100 <- Minus
X 18113258..18113381 219..342 100 <- Minus
X 18113447..18113575 90..218 100 <- Minus
X 18114611..18114646 54..89 100 <- Minus
X 18116707..18116759 1..53 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:12 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105732..18106032 630..930 100 <- Minus
X 18106681..18106822 488..629 100 <- Minus
X 18106888..18106931 444..487 100 <- Minus
X 18110504..18110604 343..443 100 <- Minus
X 18113258..18113381 219..342 100 <- Minus
X 18113447..18113575 90..218 100 <- Minus
X 18114611..18114646 54..89 100 <- Minus
X 18116707..18116759 1..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:55 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999765..18000065 630..930 100 <- Minus
arm_X 18000714..18000855 488..629 100 <- Minus
arm_X 18000921..18000964 444..487 100 <- Minus
arm_X 18004537..18004637 343..443 100 <- Minus
arm_X 18007291..18007414 219..342 100 <- Minus
arm_X 18007480..18007608 90..218 100 <- Minus
arm_X 18008644..18008679 54..89 100 <- Minus
arm_X 18010740..18010792 1..53 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:33 Download gff for HL08042.complete
Subject Subject Range Query Range Percent Splice Strand
X 18113830..18114130 630..930 100 <- Minus
X 18114779..18114920 488..629 100 <- Minus
X 18114986..18115029 444..487 100 <- Minus
X 18118602..18118702 343..443 100 <- Minus
X 18121356..18121479 219..342 100 <- Minus
X 18121545..18121673 90..218 100 <- Minus
X 18122709..18122744 54..89 100 <- Minus
X 18124805..18124857 1..53 100   Minus

HL08042.pep Sequence

Translation from 74 to 700

> HL08042.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*

HL08042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19521-PA 272 GF19521-PA 68..272 4..208 724 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18142-PA 269 GG18142-PA 65..269 4..208 722 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11970-PA 282 GH11970-PA 78..282 4..208 734 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PE 208 CG7178-PE 1..208 1..208 1047 100 Plus
wupA-PD 208 CG7178-PD 1..208 1..208 1047 100 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 952 91.3 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 952 91.3 Plus
wupA-PI 199 CG7178-PI 1..187 1..187 934 100 Plus
wupA-PA 208 CG7178-PA 1..208 1..208 933 90.4 Plus
wupA-PG 269 CG7178-PG 65..269 4..208 933 90.7 Plus
wupA-PB 208 CG7178-PB 1..208 1..208 927 88.9 Plus
wupA-PJ 199 CG7178-PJ 1..187 1..187 820 89.3 Plus
wupA-PH 260 CG7178-PH 65..248 4..187 820 89.7 Plus
wupA-PM 184 CG7178-PM 1..184 25..208 818 89.1 Plus
wupA-PL 184 CG7178-PL 1..184 25..208 818 89.1 Plus
wupA-PK 184 CG7178-PK 1..184 25..208 818 89.1 Plus
up-PM 373 CG7107-PM 83..300 5..196 156 27.4 Plus
up-PL 388 CG7107-PL 98..315 5..196 156 28.3 Plus
up-PN 394 CG7107-PN 104..321 5..196 156 28.3 Plus
up-PK 396 CG7107-PK 106..323 5..196 156 28.3 Plus
up-PG 396 CG7107-PG 106..323 5..196 156 28.3 Plus
up-PT 306 CG7107-PT 15..233 5..196 155 28.1 Plus
up-PD 306 CG7107-PD 15..233 5..196 155 28.1 Plus
up-PH 374 CG7107-PH 83..301 5..196 155 27.2 Plus
up-PE 374 CG7107-PE 83..301 5..196 155 28.1 Plus
up-PQ 388 CG7107-PQ 97..315 5..196 155 28.1 Plus
up-PS 388 CG7107-PS 97..315 5..196 155 28.1 Plus
up-PR 388 CG7107-PR 97..315 5..196 155 28.1 Plus
up-PJ 389 CG7107-PJ 98..316 5..196 155 27.2 Plus
up-PB 389 CG7107-PB 98..316 5..196 155 28.1 Plus
up-PP 396 CG7107-PP 105..323 5..196 155 28.1 Plus
up-PO 397 CG7107-PO 106..324 5..196 155 28.1 Plus
up-PI 397 CG7107-PI 106..324 5..196 155 27.2 Plus
up-PA 397 CG7107-PA 106..324 5..196 155 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14711-PA 277 GI14711-PA 73..277 4..208 734 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14173-PA 267 GL14173-PA 63..267 4..208 1019 98.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TpnI-PA 267 GA22383-PA 63..267 4..208 1019 98.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22835-PA 224 GM22835-PA 65..224 4..208 496 66.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24482-PA 98 GD24482-PA 13..98 6..91 395 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\wupA-PA 274 GJ16776-PA 70..274 4..208 734 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24919-PA 272 GK24919-PA 68..272 4..208 734 90.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\wupA-PA 270 GE15552-PA 66..270 4..208 1027 99.5 Plus

HL08042.hyp Sequence

Translation from 74 to 700

> HL08042.hyp
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*

HL08042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PE 208 CG7178-PE 1..208 1..208 1047 100 Plus
wupA-PD 208 CG7178-PD 1..208 1..208 1047 100 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 952 91.3 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 952 91.3 Plus
wupA-PI 199 CG7178-PI 1..187 1..187 934 100 Plus