![]() | BDGP Sequence Production Resources |
Search the DGRC for HL08049
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 80 |
Well: | 49 |
Vector: | pOT2 |
Associated Gene/Transcript | NaCP60E-RC |
Protein status: | HL08049.pep: validated full length |
Preliminary Size: | 4600 |
Sequenced Size: | 4397 |
Gene | Date | Evidence |
---|---|---|
CG9071 | 2001-01-01 | Release 2 assignment |
CG18506 | 2001-01-01 | Release 2 assignment |
CG18506 | 2001-07-04 | Blastp of sequenced clone |
NaCP60E | 2008-04-29 | Release 5.5 accounting |
NaCP60E | 2008-08-15 | Release 5.9 accounting |
NaCP60E | 2008-12-18 | 5.12 accounting |
4397 bp (4397 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060357
> HL08049.complete GGTGGTCCGCGTCTTCCGCATTGGGCGTATATTGCGGTTGATCAAGGCCG CCAAGGGGATCAGAAAGTTGCTATTCGCTCTCGTAGTGTCCCTGCCCGCC CTATTTAACATCGGAGCTCTGCTAGGACTGATCACCTTTATCTACGCAAT TCTGGGCATGTCGCTGTTCGGAAATGTCAAGCTCCAAGGTGCTCTCGATG ACATGGTGAACTTCCAGACCTTCGGGCGCAGCATGCAGTTACTGTTCCGG TTGATGACCTCAGCCGGGTGGAATGACGTACTTGAGTCCCTGATGATACA GCCGCCCGACTGCGACCCATTTATCCATGGGCACACGAACGGAAACTGCG GTCACCCGCTTCTAGCCATTACCTACTTTACGAGCTTTATCATCATCAGC TATATGATTGTGATCAACATGTACATTGCCATTATCCTGGAAAACTTCAA TCAGGCGCACCAGGAAGAGGAGATCGGCATCGTCGAGGACGATCTGGAAA TGTTTTATATTCGCTGGTCAAAGTATGTGTTTTCTTCTGACAGTAGGCCT AGCCGTAGGATCTCGCCAAAAGCTGCCAGGCAAACAATTCAAAGAACACT GCTGACTATTCCATCTGATTTACTTGCAGATACGATCCACATGCCACCCA ATTTATACACTTCTCGCAACTGTCCGATTTTGTTGCCTCTCTCGATCCAC CATTGGGCATCTCGAAGCCCAATAATGTCGCTTTAGTGTCATTTAATCTA CCCATTTCTAAGGGTAATAAAATGCACTGTCTCGACATTTTGCACGCGCT CGTTAAGCACGTGCTAGGTCATGTCGAGGAGACCGATGACTTCGGGCAGT TGCGGGAACAAATGGATGTCAAGTTCAAGAAACAGTTTCCAACGCGCAAA GAATTGGAAATTGTTTCGTCGACGCGGATCTGGAAGCGCCAGGAAAAGGC GGCCAAGACCATTCAAACGGGCTGGAAGGAATATTTGCGGTACTACATTT ACCACAACAGCCCCATTATCTCACTCTAGCATTCTCCGGCGAACTTTCTA TCTGATATTTGGGAGTTACTAATCCTATTGTGTCTCTTCACAGGCGCAAG CGGGAAAAGGAACGCTCCAATTCTGGGGACAGCGCCACTCAAACCTCCAG CCCTGGTGGATGGCAATCAAAACTTTCTGCCCTAAATTTCTTCCACCTTC AGGTGAGTCGTCGAGGCACTGCCTGCTCCAGTCGAGCCTCGTCTCGAAAA TCGTCGCGTGCCTCGGATGCATCCGATCTTAGCGAACTAGCTGGGCCTTG GTTGAACCTGCCTCTGATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA GATCATGGTGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAG CACCGATTGATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGAT ACTTCGCAGGTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCA AGGGAATGGACAGGACGAGACAGCGCAGTTCGAATCACTTCCAGACAGAC AGAGATGACCTCCGGTCAACACTCCTCTGCGGGATTCGGAGAAACGCTCC AGCCGTGGCAGCCGCAGTAGTAGCAGCAGCACCAGCAGCATCAGGAGCTG CTCGTCCTCATCATCGTCGTCGGCGGCATCGGCAGCCGCACCCTCGGCGC GGCGTACAAGCTGACAACCTTCGGTCTGAGTGCGTATTCCTTGCCGATTC CTGAGTGCATTTGTGTCAGAACTCGTAGTTTCTTAGGCTTAGGCATGGGG CCCGCCTCTTTGTTATCATAGTCGATAACCTATATAGTTATATATTAATC GCTTTATACGATATACATATATACACATATACAGATACGAAGCTATTCAA ATTTATACATGCAATATCAGTTTAAGGACGAAATCAATATTAACTATGTT AACAAGAACGTGCATTAAACCGTTGTAGTACTCGAATCTAATCAAAAATC CGAATGAGTCGGAATCGCCATCATCATGGTTAATGTCACAATCAGAATTG AGGAAGAGCAAATTTGTCGGTAGTTTACTGCCCGATTTAGTTGTAGTCAG AATGCCTGACCCACAAGTGAGGCAATGAAGGCAAGGCACGGCCTTCTATT CTCCTGCCGTGGGCCAACTTTCTGCCACATTTTCGAAGGTTGTTTTTGAA CTATACAATACGTAGAGGTTTGCATCACATGCATACATTACATGTGTAAC TAACTATCGCGGTTAGATCTAGGCTCATAACTGTAGTGTTTGTTTCGTAA TTATCGACTTGCATATACGGAAGGTATATGTGAATAGTATCTAAATACAT TTTGTACATATGCCAAAGGAAGTATTTTAAATTAATGAGCTAATACTATA GTTACAGACTATGACGTTAGTTAGATACAATTTATTGAAGTAATTATAAA GGTTTTTCGTTACGATAGCGCAAAGATTGCCGATTACAAATGCGATTACG ATAGCGAATATTATCCATTACCGATTGTTCGAAGTACAAAAGCGAAGTAT TAGTAGATTTGATTATTATTATATTGTATTGTACATATCTTATGGCTCCT CCCTCATCCACATCTCCCTTTCTCGTGTGCATCCAACGGTAATAACAAAG ACGTTAAAATACGAAGATGCGTAGCGCCATACCATTTTTTTTTTTTTTTT TTGCATCCCCAATGCATGGCCGATACGCATCTTAGAGATTATATTGGTCT TTGGTAATAACTAAGCCAAAAACAATGTCAAGTGATTTTGTACTCAACGC ACTTACATATTTATATCAATCCTAATCCCAGTCGGGATTAACACACTACA CTGCACTCTTATCGAGACCCAAATTAATCCGTAATCAATCAGCAGTCCAC ATAAGTACCAGTCAGAAGAAGTTTACGAAGATGAAGTTTTTAAGTTTATT TTCGATAAGTACAGTCGAAAATAGCAAATCAAAAGCAGGACGTAACAATT TTGGTCTCCTATACAATGAACAACCAACAAGCTTCCACATGAACTCTATT TTAGCAAAATAATTTACAATTTACACTCACTTTATTGTACGACTAAGAAT GGTTAGGACGGGCCAAGTTTCCAAGAAACTCGCCTTGTTTTGTTACTTTT TAAGTGTTGTTCTCTCTTTTAAGTCTCCATTGTGATCGCATTAAGTTAAA ACATCGAACAGGAAAAAAGTTAAGAAGTGAATAACGTACACTCCGAGTGG GAAAATATTAACAAATCCCGAATAACTTATGCACCCCCGCGCCATTCAGG GCACTTTGCTACTCTAACTCTACTTTCATAACTTAACAACAGACAATCAG ACAGCGATTGATAGTAAGTTGAAATTCTATGGTACCAACTAAAACGTTTT TTCCAGAAACAAACAACCAAATGAACACACAACAACTTAATTGTGATTTT AACTGCAATTTTTACACAGAAAATACAAAAAATAAGGTCATAATTTTAAT TAGAATTGTTAACAAGGAAACAAAACCAAAAACAGACAGAAACCAAACAC TCGTCAATTAAGTGATATTTAATATTGGTACGTACTCGTATTCGATTGTA CATAAACGAAAAACGATTATGATAATGGTAACGAAATAGCAATAGAACCT GATTCCAACCACAAAAAAACTAAAAGCTCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NaCP60E-RC | 11199 | NaCP60E-RC | 7789..11084 | 1093..4388 | 16480 | 100 | Plus |
NaCP60E-RC | 11199 | NaCP60E-RC | 6908..7429 | 1..522 | 2610 | 100 | Plus |
NaCP60E-RC | 11199 | NaCP60E-RC | 7430..7790 | 630..990 | 1700 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20803575..20806189 | 1762..4379 | 13010 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 20799951..20801158 | 1..1208 | 5905 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 20803247..20803504 | 1504..1761 | 1290 | 100 | Plus |
chr2R | 21145070 | chr2R | 20801208..20801392 | 1200..1384 | 925 | 100 | Plus |
chr2R | 21145070 | chr2R | 20802698..20802817 | 1384..1503 | 600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24917648..24920274 | 1762..4388 | 13135 | 100 | Plus |
2R | 25286936 | 2R | 24914021..24915228 | 1..1208 | 5935 | 99.4 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 1504..1761 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24915278..24915462 | 1200..1384 | 925 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 1384..1503 | 600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24918847..24921473 | 1762..4388 | 13135 | 100 | Plus |
2R | 25260384 | 2R | 24915220..24916427 | 1..1208 | 5935 | 99.4 | Plus |
2R | 25260384 | 2R | 24918519..24918776 | 1504..1761 | 1290 | 100 | Plus |
2R | 25260384 | 2R | 24916477..24916661 | 1200..1384 | 925 | 100 | Plus |
2R | 25260384 | 2R | 24917970..24918089 | 1384..1503 | 600 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2427 | 2296..2392 | 154 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6890 | 2308..2351 | 121 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2385 | 2320..2398 | 118 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20799951..20801152 | 1..1202 | 99 | -> | Plus |
chr2R | 20801211..20801392 | 1203..1384 | 100 | -> | Plus |
chr2R | 20802699..20802817 | 1385..1503 | 100 | == | Plus |
chr2R | 20803364..20803504 | 1621..1761 | 100 | -> | Plus |
chr2R | 20803575..20806189 | 1762..4379 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RC | 7296..8466 | 1087..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RE | 6900..8070 | 1087..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RM | 7365..8691 | 1087..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RC | 7296..8466 | 1087..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RM | 7365..8691 | 1087..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RC | 7696..10987 | 1087..4379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RE | 7109..10400 | 1087..4379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RN | 9282..12573 | 1087..4379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RC | 7696..10987 | 1087..4379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NaCP60E-RN | 9282..12573 | 1087..4379 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24914021..24915222 | 1..1202 | 99 | -> | Plus |
2R | 24915281..24915462 | 1203..1384 | 100 | -> | Plus |
2R | 24916772..24916890 | 1385..1503 | 100 | -> | Plus |
2R | 24917320..24917577 | 1504..1761 | 100 | -> | Plus |
2R | 24917648..24920265 | 1762..4379 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24914021..24915222 | 1..1202 | 99 | -> | Plus |
2R | 24915281..24915462 | 1203..1384 | 100 | -> | Plus |
2R | 24916772..24916890 | 1385..1503 | 100 | -> | Plus |
2R | 24917320..24917577 | 1504..1761 | 100 | -> | Plus |
2R | 24917648..24920265 | 1762..4379 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24914021..24915222 | 1..1202 | 99 | -> | Plus |
2R | 24915281..24915462 | 1203..1384 | 100 | -> | Plus |
2R | 24916772..24916890 | 1385..1503 | 100 | -> | Plus |
2R | 24917320..24917577 | 1504..1761 | 100 | -> | Plus |
2R | 24917648..24920265 | 1762..4379 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20801544..20802745 | 1..1202 | 99 | -> | Plus |
arm_2R | 20802804..20802985 | 1203..1384 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 1385..1503 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 1504..1761 | 100 | -> | Plus |
arm_2R | 20805171..20807788 | 1762..4379 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24915238..24916439 | 1..1202 | 99 | -> | Plus |
2R | 24916498..24916679 | 1203..1384 | 100 | -> | Plus |
2R | 24917989..24918107 | 1385..1503 | 100 | -> | Plus |
2R | 24918537..24918794 | 1504..1761 | 100 | -> | Plus |
2R | 24918865..24921482 | 1762..4379 | 100 | Plus |
Translation from 1316 to 2257
> HL08049.pep MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD ETAQFESLPDRQR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13351-PA | 304 | GF13351-PA | 1..281 | 1..280 | 883 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23018-PA | 315 | GG23018-PA | 1..315 | 1..313 | 1584 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19910-PA | 325 | GH19910-PA | 1..304 | 1..309 | 938 | 65.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NaCP60E-PI | 2712 | CG34405-PI | 2400..2712 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PH | 2844 | CG34405-PH | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PG | 2844 | CG34405-PG | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PM | 2896 | CG34405-PM | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PK | 2833 | CG34405-PK | 2537..2833 | 1..313 | 1500 | 94.6 | Plus |
NaCP60E-PJ | 2806 | CG34405-PJ | 2532..2806 | 1..313 | 1175 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19866-PA | 312 | GI19866-PA | 1..312 | 1..313 | 1049 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14965-PA | 331 | GA14965-PA | 1..331 | 1..313 | 926 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11914-PA | 313 | GM11914-PA | 1..313 | 1..313 | 1608 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11910-PA | 313 | GD11910-PA | 1..313 | 1..313 | 1623 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18976-PA | 322 | GJ18976-PA | 1..300 | 1..294 | 908 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20911-PA | 307 | GK20911-PA | 1..294 | 1..293 | 846 | 65.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14455-PA | 315 | GE14455-PA | 1..315 | 1..313 | 1280 | 88.6 | Plus |
Translation from 1316 to 2257
> HL08049.hyp MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD ETAQFESLPDRQR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NaCP60E-PI | 2712 | CG34405-PI | 2400..2712 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PH | 2844 | CG34405-PH | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PG | 2844 | CG34405-PG | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PM | 2896 | CG34405-PM | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PK | 2833 | CG34405-PK | 2537..2833 | 1..313 | 1500 | 94.6 | Plus |