Clone HL08049 Report

Search the DGRC for HL08049

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:49
Vector:pOT2
Associated Gene/TranscriptNaCP60E-RC
Protein status:HL08049.pep: validated full length
Preliminary Size:4600
Sequenced Size:4397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9071 2001-01-01 Release 2 assignment
CG18506 2001-01-01 Release 2 assignment
CG18506 2001-07-04 Blastp of sequenced clone
NaCP60E 2008-04-29 Release 5.5 accounting
NaCP60E 2008-08-15 Release 5.9 accounting
NaCP60E 2008-12-18 5.12 accounting

Clone Sequence Records

HL08049.complete Sequence

4397 bp (4397 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060357

> HL08049.complete
GGTGGTCCGCGTCTTCCGCATTGGGCGTATATTGCGGTTGATCAAGGCCG
CCAAGGGGATCAGAAAGTTGCTATTCGCTCTCGTAGTGTCCCTGCCCGCC
CTATTTAACATCGGAGCTCTGCTAGGACTGATCACCTTTATCTACGCAAT
TCTGGGCATGTCGCTGTTCGGAAATGTCAAGCTCCAAGGTGCTCTCGATG
ACATGGTGAACTTCCAGACCTTCGGGCGCAGCATGCAGTTACTGTTCCGG
TTGATGACCTCAGCCGGGTGGAATGACGTACTTGAGTCCCTGATGATACA
GCCGCCCGACTGCGACCCATTTATCCATGGGCACACGAACGGAAACTGCG
GTCACCCGCTTCTAGCCATTACCTACTTTACGAGCTTTATCATCATCAGC
TATATGATTGTGATCAACATGTACATTGCCATTATCCTGGAAAACTTCAA
TCAGGCGCACCAGGAAGAGGAGATCGGCATCGTCGAGGACGATCTGGAAA
TGTTTTATATTCGCTGGTCAAAGTATGTGTTTTCTTCTGACAGTAGGCCT
AGCCGTAGGATCTCGCCAAAAGCTGCCAGGCAAACAATTCAAAGAACACT
GCTGACTATTCCATCTGATTTACTTGCAGATACGATCCACATGCCACCCA
ATTTATACACTTCTCGCAACTGTCCGATTTTGTTGCCTCTCTCGATCCAC
CATTGGGCATCTCGAAGCCCAATAATGTCGCTTTAGTGTCATTTAATCTA
CCCATTTCTAAGGGTAATAAAATGCACTGTCTCGACATTTTGCACGCGCT
CGTTAAGCACGTGCTAGGTCATGTCGAGGAGACCGATGACTTCGGGCAGT
TGCGGGAACAAATGGATGTCAAGTTCAAGAAACAGTTTCCAACGCGCAAA
GAATTGGAAATTGTTTCGTCGACGCGGATCTGGAAGCGCCAGGAAAAGGC
GGCCAAGACCATTCAAACGGGCTGGAAGGAATATTTGCGGTACTACATTT
ACCACAACAGCCCCATTATCTCACTCTAGCATTCTCCGGCGAACTTTCTA
TCTGATATTTGGGAGTTACTAATCCTATTGTGTCTCTTCACAGGCGCAAG
CGGGAAAAGGAACGCTCCAATTCTGGGGACAGCGCCACTCAAACCTCCAG
CCCTGGTGGATGGCAATCAAAACTTTCTGCCCTAAATTTCTTCCACCTTC
AGGTGAGTCGTCGAGGCACTGCCTGCTCCAGTCGAGCCTCGTCTCGAAAA
TCGTCGCGTGCCTCGGATGCATCCGATCTTAGCGAACTAGCTGGGCCTTG
GTTGAACCTGCCTCTGATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG
ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG
GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG
TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA
AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC
TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC
AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG
GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG
CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA
CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT
CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC
GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA
GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG
TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA
ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA
GATCATGGTGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAG
CACCGATTGATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGAT
ACTTCGCAGGTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCA
AGGGAATGGACAGGACGAGACAGCGCAGTTCGAATCACTTCCAGACAGAC
AGAGATGACCTCCGGTCAACACTCCTCTGCGGGATTCGGAGAAACGCTCC
AGCCGTGGCAGCCGCAGTAGTAGCAGCAGCACCAGCAGCATCAGGAGCTG
CTCGTCCTCATCATCGTCGTCGGCGGCATCGGCAGCCGCACCCTCGGCGC
GGCGTACAAGCTGACAACCTTCGGTCTGAGTGCGTATTCCTTGCCGATTC
CTGAGTGCATTTGTGTCAGAACTCGTAGTTTCTTAGGCTTAGGCATGGGG
CCCGCCTCTTTGTTATCATAGTCGATAACCTATATAGTTATATATTAATC
GCTTTATACGATATACATATATACACATATACAGATACGAAGCTATTCAA
ATTTATACATGCAATATCAGTTTAAGGACGAAATCAATATTAACTATGTT
AACAAGAACGTGCATTAAACCGTTGTAGTACTCGAATCTAATCAAAAATC
CGAATGAGTCGGAATCGCCATCATCATGGTTAATGTCACAATCAGAATTG
AGGAAGAGCAAATTTGTCGGTAGTTTACTGCCCGATTTAGTTGTAGTCAG
AATGCCTGACCCACAAGTGAGGCAATGAAGGCAAGGCACGGCCTTCTATT
CTCCTGCCGTGGGCCAACTTTCTGCCACATTTTCGAAGGTTGTTTTTGAA
CTATACAATACGTAGAGGTTTGCATCACATGCATACATTACATGTGTAAC
TAACTATCGCGGTTAGATCTAGGCTCATAACTGTAGTGTTTGTTTCGTAA
TTATCGACTTGCATATACGGAAGGTATATGTGAATAGTATCTAAATACAT
TTTGTACATATGCCAAAGGAAGTATTTTAAATTAATGAGCTAATACTATA
GTTACAGACTATGACGTTAGTTAGATACAATTTATTGAAGTAATTATAAA
GGTTTTTCGTTACGATAGCGCAAAGATTGCCGATTACAAATGCGATTACG
ATAGCGAATATTATCCATTACCGATTGTTCGAAGTACAAAAGCGAAGTAT
TAGTAGATTTGATTATTATTATATTGTATTGTACATATCTTATGGCTCCT
CCCTCATCCACATCTCCCTTTCTCGTGTGCATCCAACGGTAATAACAAAG
ACGTTAAAATACGAAGATGCGTAGCGCCATACCATTTTTTTTTTTTTTTT
TTGCATCCCCAATGCATGGCCGATACGCATCTTAGAGATTATATTGGTCT
TTGGTAATAACTAAGCCAAAAACAATGTCAAGTGATTTTGTACTCAACGC
ACTTACATATTTATATCAATCCTAATCCCAGTCGGGATTAACACACTACA
CTGCACTCTTATCGAGACCCAAATTAATCCGTAATCAATCAGCAGTCCAC
ATAAGTACCAGTCAGAAGAAGTTTACGAAGATGAAGTTTTTAAGTTTATT
TTCGATAAGTACAGTCGAAAATAGCAAATCAAAAGCAGGACGTAACAATT
TTGGTCTCCTATACAATGAACAACCAACAAGCTTCCACATGAACTCTATT
TTAGCAAAATAATTTACAATTTACACTCACTTTATTGTACGACTAAGAAT
GGTTAGGACGGGCCAAGTTTCCAAGAAACTCGCCTTGTTTTGTTACTTTT
TAAGTGTTGTTCTCTCTTTTAAGTCTCCATTGTGATCGCATTAAGTTAAA
ACATCGAACAGGAAAAAAGTTAAGAAGTGAATAACGTACACTCCGAGTGG
GAAAATATTAACAAATCCCGAATAACTTATGCACCCCCGCGCCATTCAGG
GCACTTTGCTACTCTAACTCTACTTTCATAACTTAACAACAGACAATCAG
ACAGCGATTGATAGTAAGTTGAAATTCTATGGTACCAACTAAAACGTTTT
TTCCAGAAACAAACAACCAAATGAACACACAACAACTTAATTGTGATTTT
AACTGCAATTTTTACACAGAAAATACAAAAAATAAGGTCATAATTTTAAT
TAGAATTGTTAACAAGGAAACAAAACCAAAAACAGACAGAAACCAAACAC
TCGTCAATTAAGTGATATTTAATATTGGTACGTACTCGTATTCGATTGTA
CATAAACGAAAAACGATTATGATAATGGTAACGAAATAGCAATAGAACCT
GATTCCAACCACAAAAAAACTAAAAGCTCAAAAAAAAAAAAAAAAAA

HL08049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
NaCP60E-RC 11199 NaCP60E-RC 7789..11084 1093..4388 16480 100 Plus
NaCP60E-RC 11199 NaCP60E-RC 6908..7429 1..522 2610 100 Plus
NaCP60E-RC 11199 NaCP60E-RC 7430..7790 630..990 1700 98 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20803575..20806189 1762..4379 13010 99.9 Plus
chr2R 21145070 chr2R 20799951..20801158 1..1208 5905 99.3 Plus
chr2R 21145070 chr2R 20803247..20803504 1504..1761 1290 100 Plus
chr2R 21145070 chr2R 20801208..20801392 1200..1384 925 100 Plus
chr2R 21145070 chr2R 20802698..20802817 1384..1503 600 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24917648..24920274 1762..4388 13135 100 Plus
2R 25286936 2R 24914021..24915228 1..1208 5935 99.4 Plus
2R 25286936 2R 24917320..24917577 1504..1761 1290 100 Plus
2R 25286936 2R 24915278..24915462 1200..1384 925 100 Plus
2R 25286936 2R 24916771..24916890 1384..1503 600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24918847..24921473 1762..4388 13135 100 Plus
2R 25260384 2R 24915220..24916427 1..1208 5935 99.4 Plus
2R 25260384 2R 24918519..24918776 1504..1761 1290 100 Plus
2R 25260384 2R 24916477..24916661 1200..1384 925 100 Plus
2R 25260384 2R 24917970..24918089 1384..1503 600 100 Plus
Blast to na_te.dros performed 2019-03-15 22:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2427 2296..2392 154 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6847..6890 2308..2351 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2385 2320..2398 118 62.5 Plus

HL08049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:08:18 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20799951..20801152 1..1202 99 -> Plus
chr2R 20801211..20801392 1203..1384 100 -> Plus
chr2R 20802699..20802817 1385..1503 100 == Plus
chr2R 20803364..20803504 1621..1761 100 -> Plus
chr2R 20803575..20806189 1762..4379 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:34 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RC 7296..8466 1087..2258 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:59 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RE 6900..8070 1087..2258 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:09:09 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RM 7365..8691 1087..2414 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:40 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RC 7296..8466 1087..2258 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:29 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RM 7365..8691 1087..2414 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:28 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RC 7696..10987 1087..4379 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:58 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RE 7109..10400 1087..4379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:09:09 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RN 9282..12573 1087..4379 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:40 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RC 7696..10987 1087..4379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:29 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
NaCP60E-RN 9282..12573 1087..4379 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:18 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24914021..24915222 1..1202 99 -> Plus
2R 24915281..24915462 1203..1384 100 -> Plus
2R 24916772..24916890 1385..1503 100 -> Plus
2R 24917320..24917577 1504..1761 100 -> Plus
2R 24917648..24920265 1762..4379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:18 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24914021..24915222 1..1202 99 -> Plus
2R 24915281..24915462 1203..1384 100 -> Plus
2R 24916772..24916890 1385..1503 100 -> Plus
2R 24917320..24917577 1504..1761 100 -> Plus
2R 24917648..24920265 1762..4379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:18 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24914021..24915222 1..1202 99 -> Plus
2R 24915281..24915462 1203..1384 100 -> Plus
2R 24916772..24916890 1385..1503 100 -> Plus
2R 24917320..24917577 1504..1761 100 -> Plus
2R 24917648..24920265 1762..4379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:09:09 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20801544..20802745 1..1202 99 -> Plus
arm_2R 20802804..20802985 1203..1384 100 -> Plus
arm_2R 20804295..20804413 1385..1503 100 -> Plus
arm_2R 20804843..20805100 1504..1761 100 -> Plus
arm_2R 20805171..20807788 1762..4379 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:26 Download gff for HL08049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24915238..24916439 1..1202 99 -> Plus
2R 24916498..24916679 1203..1384 100 -> Plus
2R 24917989..24918107 1385..1503 100 -> Plus
2R 24918537..24918794 1504..1761 100 -> Plus
2R 24918865..24921482 1762..4379 100   Plus

HL08049.pep Sequence

Translation from 1316 to 2257

> HL08049.pep
MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV
DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA
SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE
ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS
PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS
PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD
ETAQFESLPDRQR*

HL08049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13351-PA 304 GF13351-PA 1..281 1..280 883 77.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23018-PA 315 GG23018-PA 1..315 1..313 1584 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19910-PA 325 GH19910-PA 1..304 1..309 938 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
NaCP60E-PI 2712 CG34405-PI 2400..2712 1..313 1605 100 Plus
NaCP60E-PH 2844 CG34405-PH 2532..2844 1..313 1605 100 Plus
NaCP60E-PG 2844 CG34405-PG 2532..2844 1..313 1605 100 Plus
NaCP60E-PM 2896 CG34405-PM 2532..2844 1..313 1605 100 Plus
NaCP60E-PK 2833 CG34405-PK 2537..2833 1..313 1500 94.6 Plus
NaCP60E-PJ 2806 CG34405-PJ 2532..2806 1..313 1175 78.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19866-PA 312 GI19866-PA 1..312 1..313 1049 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14965-PA 331 GA14965-PA 1..331 1..313 926 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11914-PA 313 GM11914-PA 1..313 1..313 1608 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11910-PA 313 GD11910-PA 1..313 1..313 1623 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18976-PA 322 GJ18976-PA 1..300 1..294 908 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20911-PA 307 GK20911-PA 1..294 1..293 846 65.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14455-PA 315 GE14455-PA 1..315 1..313 1280 88.6 Plus

HL08049.hyp Sequence

Translation from 1316 to 2257

> HL08049.hyp
MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV
DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA
SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE
ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS
PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS
PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD
ETAQFESLPDRQR*

HL08049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
NaCP60E-PI 2712 CG34405-PI 2400..2712 1..313 1605 100 Plus
NaCP60E-PH 2844 CG34405-PH 2532..2844 1..313 1605 100 Plus
NaCP60E-PG 2844 CG34405-PG 2532..2844 1..313 1605 100 Plus
NaCP60E-PM 2896 CG34405-PM 2532..2844 1..313 1605 100 Plus
NaCP60E-PK 2833 CG34405-PK 2537..2833 1..313 1500 94.6 Plus