Clone HL08052 Report

Search the DGRC for HL08052

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:52
Vector:pOT2
Associated Gene/Transcriptmal-RA
Protein status:HL08052.pep: gold
Preliminary Size:1300
Sequenced Size:2738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1692 2001-01-01 Release 2 assignment
CG1692 2002-06-01 Blastp of sequenced clone
CG1692 2003-01-01 Sim4 clustering to Release 3
mal 2008-04-29 Release 5.5 accounting
mal 2008-08-15 Release 5.9 accounting
mal 2008-12-18 5.12 accounting

Clone Sequence Records

HL08052.complete Sequence

2738 bp (2738 high quality bases) assembled on 2002-06-01

GenBank Submission: AY118319

> HL08052.complete
CAGCGAAGAAGAGTATGGCGCAACAAATGCAAGCCGGTCGCAAATAAATA
AAGCCCGCTTTGCAGCCAACACGAATAGTTAGTTCCCAACATGACATCAT
ATCGGCCGGAGTTCTCCGCATCGGAGCAGTCGCAAATAGACGCGGAATTC
TCTAGATTGGCCAGCAACAAGAGTGTTTACCTGGATCATGCGGGCACCAC
TCTCTATGCCGAGAGCCAGGTGACGGCCGCCGCGGAGCAACTGCAGCGCA
ATGTCATCTGCAATCCGCACACCTGCCGCCTCACCGGCGACTTCGTCGAC
CAGGTGCGATTCAAAATACTGGAATTCTTTAACACCACCGCCGAAGATTA
CCATGTGATATTCACGGCGAATGCCACCGCTGCTTTGTCCCTGGTGGCGG
AAAACTTTGACTTTGGATCCTCTGGTGAGTTTCACTTCTGCCAGGAGAAC
CACACCTCAGTGCTGGGAATGCGGGAAAGGGTCCGGGAAAACGGTATATA
CATGCTGAGGGAGAATGAAATCTCTGGCGGAAAGCACAAGGCGAACGGGA
AAGTTCACGAGGTGTCCGGAAAAACAGGAAACTCCTTGCTGACCTTTTCG
GCCCAATGCAACTTTAGTGGTTACAAAATCCCACTGGAAGTCATTGAGCA
AATCCAAATCGATGGCTTGGCCAAGCCGGGAAAAGAGCTTTGGAGCTCTT
TGGGAGAGAAGAAGAAGAATATGCACAACGATTACTATATCTGCCTGGAT
GCGGCGTCTTTTGTGGCCACCAGTCCGTTGGATCTGCAAAAGTATAGACC
AGATTACGTGTGCCTTAGTTTCTACAAGATCTTCGGTTATCCCACGGGCG
TGGGAGCCCTGCTCGTGAGTCGACGAGGAGCCGAGGTCTTCCAGAAGCGC
CGCTTTTTTGGCGGTGGTACCATCAACTACGCATATCCGCATGCCATGGA
TTACCAGCTGAGAGAGACCTTCCATCAGCGCTACGAGGACGGCACCCTGC
CATTCCTCTCCATTGTCGGGTTGCTCGAGGGCTTTCGAACGCTGGAGAGA
TTGGTGCCCAGAACGGACGAGTTTAGCACCATGGAGAGGATTTCCAGACA
CGTCTTTGGTCTGGCCAAGTATCTGGAGGATCAGCTGCGCCAGCTGCATC
ATCCCAATGGTGAGCCCCTCGTGAAGCTGTACAATAAAGTGGGCTACCAA
GACAAATCCCGGCAGGGTGGCATCGTGGCCTTTAACGTGCGCACTGAATC
GGGTTCGTTTGTGGGATTCGGCGAGATCGCCTGTGTGGCTGCTCTGCACG
GAATACTCCTGCGGACTGGTTGCTTCTGCAACATCGGAGCCTGCCAATAT
TACCTAGGCCTCGATGAAGATGCTTTGGATGCGATTTACAAGCGAGCAGG
TCGCATATGCGGCGACTACTTTGATCTGATCGATGGACAGCCGACGGGAG
CGGTACGGGTATCTTTTGGCTATATGACAACTATTCAGGACGTAGACAAG
CTGCTCCAGATGCTGCGCTCCAGTTATTTGGCAACCAAGCCGCTGCAGCG
GATTCAGTTCATCGAGGAGCAGGCGGAGCAATTGCCGCCGTTGCTGAAGG
AGCGAGTCCAGCTCTTGAGGCCAAAACTATTGCAGATGGCCATATATCCG
GTAAAGTCTTGTGCCGCCTTTAAGATCGAATTACCGGGCTCCTGGCCATT
GACGGATCAAGGTTTGAAATATGACCGTGAGTGGATGATCGTGGACATGA
ATGGCATGGCGTTGACCCAGAAACGCTGCACGGAGTTGTGCCTAATTAGG
CCAGTGATTAAGGTTGACCAATTGGAGCTGCAGTTTGGAGAAAATTCCAC
CATCTCGGTGCCCCTTTCTCTGGATGACCAGGCAGCCGACACAGCAAAAT
GCGTAAGCAAGGTGTGCCGACAGCCCGTGGAAGGTTTGGATTGCGGCGAT
AGGGTTGCCCAGTGGTTAAGCGAAAACCTCGGCATGGAGGGCCTCCGTTT
GCTTCGACAATCGGGCCAGAGAAACTCTTCCAAGGATCAGCAGAAGCTAA
GTCTGGTTAATCAGGCCCAGTTCTTGCTGCTAAACAAGTCTTCCGTGCGA
TCGCTTCAATTTGAAGAGCCCCTCGACGAGACTGTGGATCGTTTTCGGGC
AAATATCATCATCGACACGGGCAGTGCCTTTGAGGAGCTTACCTACAAGG
CCCTGTCCATTGGGGGAATCCAATTTCAGGTGGAGGGTCCCTGCCAGCGC
TGCGACATGATCTGCATTAACCAAAGGACAGGCGAACGGTCGCCAGAAAC
CTTGACCACCATATCCCGCCTGCAGAAGGGTCGCATGCGATTCGGCATCT
ACATCACTAGGATCCCCCAGGACACAAAAGAACTGGAACCCAAGGAGCAA
CACATGACCTGCGGCGATGTTGTCCTTGTGGAATAAGCTCACTTTACATC
ACTTCAGCGTGGTTTTCTTCGTTCTTTGGTTCGTTGACCCGAAATGTTTC
TATTGTACATAGTTTTAGCACAATATTCACTAAGTAATTCTCTATTACGT
TGCATCACGTTTCGCACTTAGTTTGTTTTTTAAGTACTTCTGAAATAGGA
ATACGCAAACATTCTTAAAGAAACATTCAGGATAGCTTAAGTTCAAAGTA
ACCGGATACCTCTTGCCAGTGTCTTAAGCCTTTAAAAGGCCTTAATTGCA
AAATAAACACATTGAAATCGAAAAAAAAAAAAAAAAAA

HL08052.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
mal-RA 3286 mal-RA 484..3204 1..2721 13605 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20297090..20298720 1090..2720 8005 99.4 Plus
chrX 22417052 chrX 20296254..20297036 315..1097 3870 99.6 Plus
chrX 22417052 chrX 20295674..20295837 1..164 805 99.4 Plus
chrX 22417052 chrX 20295908..20296058 164..314 755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20431580..20433211 1090..2721 8145 99.9 Plus
X 23542271 X 20430744..20431526 315..1097 3915 100 Plus
X 23542271 X 20430164..20430327 1..164 820 100 Plus
X 23542271 X 20430398..20430548 164..314 755 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20416672..20418303 1090..2721 8145 99.9 Plus
X 23527363 X 20415836..20416618 315..1097 3915 100 Plus
X 23527363 X 20415256..20415419 1..164 820 100 Plus
X 23527363 X 20415490..20415640 164..314 755 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:06:19 has no hits.

HL08052.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:06:57 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20296254..20297036 315..1097 99 -> Plus
chrX 20295674..20295836 1..163 99 -> Plus
chrX 20295908..20296058 164..314 100 -> Plus
chrX 20297098..20298720 1098..2720 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:35 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1..2346 91..2436 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:22 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1..2346 91..2436 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:02 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1..2346 91..2436 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:00 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1..2346 91..2436 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:55:44 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1..2346 91..2436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:14 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 484..3203 1..2720 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:22 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 484..3203 1..2720 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:02 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 30..2749 1..2720 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:00 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 484..3203 1..2720 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:55:44 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 30..2749 1..2720 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:57 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
X 20430164..20430326 1..163 100 -> Plus
X 20430398..20430548 164..314 100 -> Plus
X 20430744..20431526 315..1097 100 -> Plus
X 20431588..20433210 1098..2720 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:57 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
X 20430164..20430326 1..163 100 -> Plus
X 20430398..20430548 164..314 100 -> Plus
X 20430744..20431526 315..1097 100 -> Plus
X 20431588..20433210 1098..2720 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:57 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
X 20430164..20430326 1..163 100 -> Plus
X 20430398..20430548 164..314 100 -> Plus
X 20430744..20431526 315..1097 100 -> Plus
X 20431588..20433210 1098..2720 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:02 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20301191..20301353 1..163 100 -> Plus
arm_X 20301425..20301575 164..314 100 -> Plus
arm_X 20301771..20302553 315..1097 100 -> Plus
arm_X 20302615..20304237 1098..2720 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:24 Download gff for HL08052.complete
Subject Subject Range Query Range Percent Splice Strand
X 20415836..20416618 315..1097 100 -> Plus
X 20416680..20418302 1098..2720 100   Plus
X 20415256..20415418 1..163 100 -> Plus
X 20415490..20415640 164..314 100 -> Plus

HL08052.hyp Sequence

Translation from 90 to 2435

> HL08052.hyp
MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ
LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS
LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK
ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL
WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY
PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED
GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR
QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA
ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ
PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP
LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI
VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD
TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ
QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL
TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR
FGIYITRIPQDTKELEPKEQHMTCGDVVLVE*

HL08052.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
mal-PB 781 CG1692-PB 1..781 1..781 4068 100 Plus
mal-PA 781 CG1692-PA 1..781 1..781 4068 100 Plus

HL08052.pep Sequence

Translation from 90 to 2435

> HL08052.pep
MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ
LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS
LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK
ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL
WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY
PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED
GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR
QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA
ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ
PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP
LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI
VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD
TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ
QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL
TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR
FGIYITRIPQDTKELEPKEQHMTCGDVVLVE*

HL08052.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19210-PA 773 GF19210-PA 1..773 1..781 3441 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19684-PA 781 GG19684-PA 1..781 1..781 3917 93.6 Plus
Dere\GG24108-PA 340 GG24108-PA 55..338 515..781 162 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17731-PA 770 GH17731-PA 1..768 1..780 2704 67 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
mal-PB 781 CG1692-PB 1..781 1..781 4068 100 Plus
mal-PA 781 CG1692-PA 1..781 1..781 4068 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15478-PA 779 GI15478-PA 1..778 1..780 2945 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15793-PA 796 GL15793-PA 1..795 1..780 3097 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14218-PA 792 GA14218-PA 1..791 1..780 3119 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23034-PA 463 GM23034-PA 1..435 1..435 2227 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19688-PA 150 GD19688-PA 1..150 632..781 776 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19190-PA 780 GJ19190-PA 1..779 1..780 2864 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16373-PA 789 GK16373-PA 9..789 6..781 2758 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17883-PA 780 GE17883-PA 1..780 1..781 3908 93.7 Plus
Dyak\GE19306-PA 340 GE19306-PA 55..297 515..736 159 25.5 Plus