BDGP Sequence Production Resources |
Search the DGRC for HL08052
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 80 |
Well: | 52 |
Vector: | pOT2 |
Associated Gene/Transcript | mal-RA |
Protein status: | HL08052.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 2738 |
Gene | Date | Evidence |
---|---|---|
CG1692 | 2001-01-01 | Release 2 assignment |
CG1692 | 2002-06-01 | Blastp of sequenced clone |
CG1692 | 2003-01-01 | Sim4 clustering to Release 3 |
mal | 2008-04-29 | Release 5.5 accounting |
mal | 2008-08-15 | Release 5.9 accounting |
mal | 2008-12-18 | 5.12 accounting |
2738 bp (2738 high quality bases) assembled on 2002-06-01
GenBank Submission: AY118319
> HL08052.complete CAGCGAAGAAGAGTATGGCGCAACAAATGCAAGCCGGTCGCAAATAAATA AAGCCCGCTTTGCAGCCAACACGAATAGTTAGTTCCCAACATGACATCAT ATCGGCCGGAGTTCTCCGCATCGGAGCAGTCGCAAATAGACGCGGAATTC TCTAGATTGGCCAGCAACAAGAGTGTTTACCTGGATCATGCGGGCACCAC TCTCTATGCCGAGAGCCAGGTGACGGCCGCCGCGGAGCAACTGCAGCGCA ATGTCATCTGCAATCCGCACACCTGCCGCCTCACCGGCGACTTCGTCGAC CAGGTGCGATTCAAAATACTGGAATTCTTTAACACCACCGCCGAAGATTA CCATGTGATATTCACGGCGAATGCCACCGCTGCTTTGTCCCTGGTGGCGG AAAACTTTGACTTTGGATCCTCTGGTGAGTTTCACTTCTGCCAGGAGAAC CACACCTCAGTGCTGGGAATGCGGGAAAGGGTCCGGGAAAACGGTATATA CATGCTGAGGGAGAATGAAATCTCTGGCGGAAAGCACAAGGCGAACGGGA AAGTTCACGAGGTGTCCGGAAAAACAGGAAACTCCTTGCTGACCTTTTCG GCCCAATGCAACTTTAGTGGTTACAAAATCCCACTGGAAGTCATTGAGCA AATCCAAATCGATGGCTTGGCCAAGCCGGGAAAAGAGCTTTGGAGCTCTT TGGGAGAGAAGAAGAAGAATATGCACAACGATTACTATATCTGCCTGGAT GCGGCGTCTTTTGTGGCCACCAGTCCGTTGGATCTGCAAAAGTATAGACC AGATTACGTGTGCCTTAGTTTCTACAAGATCTTCGGTTATCCCACGGGCG TGGGAGCCCTGCTCGTGAGTCGACGAGGAGCCGAGGTCTTCCAGAAGCGC CGCTTTTTTGGCGGTGGTACCATCAACTACGCATATCCGCATGCCATGGA TTACCAGCTGAGAGAGACCTTCCATCAGCGCTACGAGGACGGCACCCTGC CATTCCTCTCCATTGTCGGGTTGCTCGAGGGCTTTCGAACGCTGGAGAGA TTGGTGCCCAGAACGGACGAGTTTAGCACCATGGAGAGGATTTCCAGACA CGTCTTTGGTCTGGCCAAGTATCTGGAGGATCAGCTGCGCCAGCTGCATC ATCCCAATGGTGAGCCCCTCGTGAAGCTGTACAATAAAGTGGGCTACCAA GACAAATCCCGGCAGGGTGGCATCGTGGCCTTTAACGTGCGCACTGAATC GGGTTCGTTTGTGGGATTCGGCGAGATCGCCTGTGTGGCTGCTCTGCACG GAATACTCCTGCGGACTGGTTGCTTCTGCAACATCGGAGCCTGCCAATAT TACCTAGGCCTCGATGAAGATGCTTTGGATGCGATTTACAAGCGAGCAGG TCGCATATGCGGCGACTACTTTGATCTGATCGATGGACAGCCGACGGGAG CGGTACGGGTATCTTTTGGCTATATGACAACTATTCAGGACGTAGACAAG CTGCTCCAGATGCTGCGCTCCAGTTATTTGGCAACCAAGCCGCTGCAGCG GATTCAGTTCATCGAGGAGCAGGCGGAGCAATTGCCGCCGTTGCTGAAGG AGCGAGTCCAGCTCTTGAGGCCAAAACTATTGCAGATGGCCATATATCCG GTAAAGTCTTGTGCCGCCTTTAAGATCGAATTACCGGGCTCCTGGCCATT GACGGATCAAGGTTTGAAATATGACCGTGAGTGGATGATCGTGGACATGA ATGGCATGGCGTTGACCCAGAAACGCTGCACGGAGTTGTGCCTAATTAGG CCAGTGATTAAGGTTGACCAATTGGAGCTGCAGTTTGGAGAAAATTCCAC CATCTCGGTGCCCCTTTCTCTGGATGACCAGGCAGCCGACACAGCAAAAT GCGTAAGCAAGGTGTGCCGACAGCCCGTGGAAGGTTTGGATTGCGGCGAT AGGGTTGCCCAGTGGTTAAGCGAAAACCTCGGCATGGAGGGCCTCCGTTT GCTTCGACAATCGGGCCAGAGAAACTCTTCCAAGGATCAGCAGAAGCTAA GTCTGGTTAATCAGGCCCAGTTCTTGCTGCTAAACAAGTCTTCCGTGCGA TCGCTTCAATTTGAAGAGCCCCTCGACGAGACTGTGGATCGTTTTCGGGC AAATATCATCATCGACACGGGCAGTGCCTTTGAGGAGCTTACCTACAAGG CCCTGTCCATTGGGGGAATCCAATTTCAGGTGGAGGGTCCCTGCCAGCGC TGCGACATGATCTGCATTAACCAAAGGACAGGCGAACGGTCGCCAGAAAC CTTGACCACCATATCCCGCCTGCAGAAGGGTCGCATGCGATTCGGCATCT ACATCACTAGGATCCCCCAGGACACAAAAGAACTGGAACCCAAGGAGCAA CACATGACCTGCGGCGATGTTGTCCTTGTGGAATAAGCTCACTTTACATC ACTTCAGCGTGGTTTTCTTCGTTCTTTGGTTCGTTGACCCGAAATGTTTC TATTGTACATAGTTTTAGCACAATATTCACTAAGTAATTCTCTATTACGT TGCATCACGTTTCGCACTTAGTTTGTTTTTTAAGTACTTCTGAAATAGGA ATACGCAAACATTCTTAAAGAAACATTCAGGATAGCTTAAGTTCAAAGTA ACCGGATACCTCTTGCCAGTGTCTTAAGCCTTTAAAAGGCCTTAATTGCA AAATAAACACATTGAAATCGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mal-RA | 3286 | mal-RA | 484..3204 | 1..2721 | 13605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 20297090..20298720 | 1090..2720 | 8005 | 99.4 | Plus |
chrX | 22417052 | chrX | 20296254..20297036 | 315..1097 | 3870 | 99.6 | Plus |
chrX | 22417052 | chrX | 20295674..20295837 | 1..164 | 805 | 99.4 | Plus |
chrX | 22417052 | chrX | 20295908..20296058 | 164..314 | 755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 20431580..20433211 | 1090..2721 | 8145 | 99.9 | Plus |
X | 23542271 | X | 20430744..20431526 | 315..1097 | 3915 | 100 | Plus |
X | 23542271 | X | 20430164..20430327 | 1..164 | 820 | 100 | Plus |
X | 23542271 | X | 20430398..20430548 | 164..314 | 755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 20416672..20418303 | 1090..2721 | 8145 | 99.9 | Plus |
X | 23527363 | X | 20415836..20416618 | 315..1097 | 3915 | 100 | Plus |
X | 23527363 | X | 20415256..20415419 | 1..164 | 820 | 100 | Plus |
X | 23527363 | X | 20415490..20415640 | 164..314 | 755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 20296254..20297036 | 315..1097 | 99 | -> | Plus |
chrX | 20295674..20295836 | 1..163 | 99 | -> | Plus |
chrX | 20295908..20296058 | 164..314 | 100 | -> | Plus |
chrX | 20297098..20298720 | 1098..2720 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 1..2346 | 91..2436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 1..2346 | 91..2436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 1..2346 | 91..2436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 1..2346 | 91..2436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 1..2346 | 91..2436 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 484..3203 | 1..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 484..3203 | 1..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 30..2749 | 1..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 484..3203 | 1..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mal-RA | 30..2749 | 1..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20430164..20430326 | 1..163 | 100 | -> | Plus |
X | 20430398..20430548 | 164..314 | 100 | -> | Plus |
X | 20430744..20431526 | 315..1097 | 100 | -> | Plus |
X | 20431588..20433210 | 1098..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20430164..20430326 | 1..163 | 100 | -> | Plus |
X | 20430398..20430548 | 164..314 | 100 | -> | Plus |
X | 20430744..20431526 | 315..1097 | 100 | -> | Plus |
X | 20431588..20433210 | 1098..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20430164..20430326 | 1..163 | 100 | -> | Plus |
X | 20430398..20430548 | 164..314 | 100 | -> | Plus |
X | 20430744..20431526 | 315..1097 | 100 | -> | Plus |
X | 20431588..20433210 | 1098..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 20301191..20301353 | 1..163 | 100 | -> | Plus |
arm_X | 20301425..20301575 | 164..314 | 100 | -> | Plus |
arm_X | 20301771..20302553 | 315..1097 | 100 | -> | Plus |
arm_X | 20302615..20304237 | 1098..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 20415836..20416618 | 315..1097 | 100 | -> | Plus |
X | 20416680..20418302 | 1098..2720 | 100 | Plus | |
X | 20415256..20415418 | 1..163 | 100 | -> | Plus |
X | 20415490..20415640 | 164..314 | 100 | -> | Plus |
Translation from 90 to 2435
> HL08052.hyp MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR FGIYITRIPQDTKELEPKEQHMTCGDVVLVE*
Translation from 90 to 2435
> HL08052.pep MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR FGIYITRIPQDTKELEPKEQHMTCGDVVLVE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19210-PA | 773 | GF19210-PA | 1..773 | 1..781 | 3441 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19684-PA | 781 | GG19684-PA | 1..781 | 1..781 | 3917 | 93.6 | Plus |
Dere\GG24108-PA | 340 | GG24108-PA | 55..338 | 515..781 | 162 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17731-PA | 770 | GH17731-PA | 1..768 | 1..780 | 2704 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mal-PB | 781 | CG1692-PB | 1..781 | 1..781 | 4068 | 100 | Plus |
mal-PA | 781 | CG1692-PA | 1..781 | 1..781 | 4068 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15478-PA | 779 | GI15478-PA | 1..778 | 1..780 | 2945 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15793-PA | 796 | GL15793-PA | 1..795 | 1..780 | 3097 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14218-PA | 792 | GA14218-PA | 1..791 | 1..780 | 3119 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23034-PA | 463 | GM23034-PA | 1..435 | 1..435 | 2227 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19688-PA | 150 | GD19688-PA | 1..150 | 632..781 | 776 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19190-PA | 780 | GJ19190-PA | 1..779 | 1..780 | 2864 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16373-PA | 789 | GK16373-PA | 9..789 | 6..781 | 2758 | 68.5 | Plus |