Clone HL08057 Report

Search the DGRC for HL08057

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:57
Vector:pOT2
Associated Gene/TranscriptPdh-RA
Protein status:HL08057.pep: gold
Preliminary Size:1056
Sequenced Size:963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4899 2001-01-01 Release 2 assignment
CG4899 2002-01-03 Blastp of sequenced clone
CG4899 2003-01-01 Sim4 clustering to Release 3
Pdh 2008-04-29 Release 5.5 accounting
Pdh 2008-08-15 Release 5.9 accounting
Pdh 2008-12-18 5.12 accounting

Clone Sequence Records

HL08057.complete Sequence

963 bp (963 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075375

> HL08057.complete
AGGAGCTCAGTGCTTGATGAAGCCACAAGGAATACCACCGACTACTACAC
GAATCAGCCAGACCAAGATGTCCTTTCGCGGCAAGAATGCAGTGGTGACC
GGTGGAGCTGGAGGCATTGGACTGCAGGTGTCCAAGCAGCTCCTGGCCGC
TGGAGCAGCGAAGGTGGCCATCATTGATTTGCAGGATAATCTGGAGGAGT
TTGTAAAACTTAGGGCCGCTCATCCCACCCAAAGCGTAATGATCATCAAG
ATGGATGTGGCGAACAAGAAGGGTGTGGAAGCCACCTATGAGGAGATAGC
CAAGACCTTCGGTAACATCGATATTGTGGTCAATGTAGCCGGGATTTTTA
ACGACAAGGATGTGCAGAGGACTCTGTTGGTAAATCTCGGTGGAATCATC
AATTCCACACTGAGTGCATTGCCCTACATGGGCAAGGATAATGGCGGCAA
GGGTGGCATTGTGGTTAACATGAGCTCGGTGGTGGGTCTGGATCCAATGT
TCATCATTCCCGTTTACGGAGCCACCAAGGCTGGCATCATCAACTTCACC
CGGTGCTTGGCGAACGAAAAGTACTATCAACGCTCGGGCATCAAGTTTGT
GACTGTTTGTCCTGGAGCTACAATGACGGACATGTTCACCAACTTTACGG
AGAAGATCATCTTCCCGGAAACGAGTGACGAGACCTATAGGATCCTGGAT
AGGCTAAACAAGCAGAGTGCCGCTGATGTCTCTCGATGCATTCTGAATGT
CCTGGAGAAGGACAAGAACGGAGCTGTCTATGTCATCGAGGGTAAGCGCG
TTTACCCTTTGGAAATTAAGCCCCAGTGGACGGGCAAGGAACAGGCCCTT
TAAGTGGGTTAATTCGTTCACATCCTAAACACATGCATTTTACAAATATG
AAGTTATTATGGACACTAGTTATTTAATAAACAAACGATGCACAGAAAAA
AAAAAAAAAAAAA

HL08057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh-RA 1262 Pdh-RA 312..1259 1..948 4740 100 Plus
Pdh-RC 1262 Pdh-RC 312..1259 1..948 4740 100 Plus
Pdh.a 1262 Pdh.a 312..1259 1..948 4740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16343432..16343834 562..160 2015 100 Minus
chr3L 24539361 chr3L 16342985..16343368 945..562 1875 99.2 Minus
chr3L 24539361 chr3L 16343890..16344049 160..1 800 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16353680..16354082 562..160 2015 100 Minus
3L 28110227 3L 16353230..16353616 948..562 1935 100 Minus
3L 28110227 3L 16354138..16354297 160..1 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16346780..16347182 562..160 2015 100 Minus
3L 28103327 3L 16346330..16346716 948..562 1935 100 Minus
3L 28103327 3L 16347238..16347397 160..1 800 100 Minus
Blast to na_te.dros performed 2019-03-16 13:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 128..198 211..281 111 65.3 Plus

HL08057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:36:36 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16342985..16343367 563..945 99 <- Minus
chr3L 16343432..16343833 161..562 100 <- Minus
chr3L 16343890..16344049 1..160 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:37 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:33 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:33 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:24 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:24 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:49 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..945 1..945 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:33 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..945 1..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:33 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..945 1..945 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:24 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..945 1..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:24 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
Pdh-RA 1..945 1..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:36 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 563..945 100 <- Minus
3L 16353680..16354081 161..562 100 <- Minus
3L 16354138..16354297 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:36 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 563..945 100 <- Minus
3L 16353680..16354081 161..562 100 <- Minus
3L 16354138..16354297 1..160 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:36:36 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16353233..16353615 563..945 100 <- Minus
3L 16353680..16354081 161..562 100 <- Minus
3L 16354138..16354297 1..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:33 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16347238..16347397 1..160 100   Minus
arm_3L 16346333..16346715 563..945 100 <- Minus
arm_3L 16346780..16347181 161..562 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:08 Download gff for HL08057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16346333..16346715 563..945 100 <- Minus
3L 16346780..16347181 161..562 100 <- Minus
3L 16347238..16347397 1..160 100   Minus

HL08057.hyp Sequence

Translation from 0 to 852

> HL08057.hyp
GAQCLMKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAA
GAAKVAIIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIA
KTFGNIDIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGK
GGIVVNMSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFV
TVCPGATMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNV
LEKDKNGAVYVIEGKRVYPLEIKPQWTGKEQAL*

HL08057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh-PA 278 CG4899-PA 1..278 6..283 1411 100 Plus
Pdh-PB 277 CG4899-PB 1..277 6..283 1394 99.6 Plus
Pdh-PC 261 CG4899-PC 1..261 23..283 1322 100 Plus
Pdh-PD 260 CG4899-PD 1..260 23..283 1305 99.6 Plus
CG4842-PA 259 CG4842-PA 1..253 23..276 501 39 Plus

HL08057.pep Sequence

Translation from 16 to 852

> HL08057.pep
MKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAKV
AIIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIAKTFGN
IDIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGKGGIVV
NMSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPG
ATMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNVLEKDK
NGAVYVIEGKRVYPLEIKPQWTGKEQAL*

HL08057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24389-PA 261 GF24389-PA 1..261 18..278 1344 96.6 Plus
Dana\GF10118-PA 259 GF10118-PA 1..256 18..274 492 38.1 Plus
Dana\Adhr-PA 272 GF14889-PA 6..260 22..278 330 28.8 Plus
Dana\GF12913-PA 372 GF12913-PA 122..368 21..271 326 29.7 Plus
Dana\Adh-PA 256 GF14888-PA 3..252 18..271 324 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13462-PA 261 GG13462-PA 1..261 18..278 1365 99.2 Plus
Dere\GG16001-PA 259 GG16001-PA 1..253 18..271 500 38.2 Plus
Dere\GG25347-PA 256 GG25347-PA 4..250 20..264 407 33.1 Plus
Dere\Adhr-PA 272 GG25121-PA 6..260 22..278 338 29.5 Plus
Dere\Adh-PA 256 GG25120-PA 3..252 18..271 304 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15599-PA 261 GH15599-PA 1..261 18..278 1238 87.7 Plus
Dgri\GH15889-PA 261 GH15889-PA 1..253 18..271 442 34.3 Plus
Dgri\GH13326-PA 257 GH13326-PA 4..255 20..271 411 32.4 Plus
Dgri\GH13404-PA 274 GH13404-PA 6..258 22..276 347 29.7 Plus
Dgri\Adh-PA 254 GH13025-PA 1..250 18..271 305 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pdh-PA 278 CG4899-PA 1..278 1..278 1411 100 Plus
Pdh-PB 277 CG4899-PB 1..277 1..278 1394 99.6 Plus
Pdh-PC 261 CG4899-PC 1..261 18..278 1322 100 Plus
Pdh-PD 260 CG4899-PD 1..260 18..278 1305 99.6 Plus
CG4842-PA 259 CG4842-PA 1..253 18..271 501 39 Plus
CG18814-PB 267 CG18814-PB 1..254 18..271 488 37 Plus
Fbp2-PC 256 CG3763-PC 6..240 22..257 415 33.5 Plus
Fbp2-PB 256 CG3763-PB 6..240 22..257 415 33.5 Plus
Fbp2-PA 256 CG3763-PA 6..240 22..257 415 33.5 Plus
Adhr-PC 272 CG3484-PC 6..240 22..258 340 29.5 Plus
Adhr-PB 272 CG3484-PB 6..240 22..258 340 29.5 Plus
Adhr-PA 272 CG3484-PA 6..240 22..258 340 29.5 Plus
Adh-PE 256 CG3481-PE 1..252 18..271 312 30.4 Plus
Adh-PF 256 CG3481-PF 1..252 18..271 312 30.4 Plus
Adh-PH 256 CG3481-PH 1..252 18..271 312 30.4 Plus
Adh-PI 256 CG3481-PI 1..252 18..271 312 30.4 Plus
Adh-PC 256 CG3481-PC 1..252 18..271 312 30.4 Plus
scu-PA 255 CG7113-PA 3..207 23..214 198 30.8 Plus
CG3699-PA 251 CG3699-PA 1..189 18..209 192 32.5 Plus
CG31548-PA 256 CG31548-PA 1..191 18..206 186 27.4 Plus
CG40485-PC 247 CG40485-PC 9..203 25..206 178 27.4 Plus
CG40485-PB 247 CG40485-PB 9..203 25..206 178 27.4 Plus
CG31549-PB 257 CG31549-PB 3..192 19..206 174 27.6 Plus
CG31549-PA 257 CG31549-PA 3..192 19..206 174 27.6 Plus
CG9150-PB 251 CG9150-PB 4..225 20..237 170 25.3 Plus
CG12171-PA 257 CG12171-PA 3..192 19..206 170 27 Plus
CG17121-PA 361 CG17121-PA 92..259 22..184 165 30.2 Plus
CG40485-PA 231 CG40485-PA 9..225 25..232 161 28.3 Plus
CG3603-PB 249 CG3603-PB 8..195 22..206 154 31.7 Plus
CG3603-PA 249 CG3603-PA 8..195 22..206 154 31.7 Plus
antdh-PA 250 CG1386-PA 4..203 20..206 154 26.2 Plus
CG3301-PC 250 CG3301-PC 9..203 25..207 154 28.1 Plus
CG3301-PB 250 CG3301-PB 9..203 25..207 154 28.1 Plus
CG3301-PA 250 CG3301-PA 9..203 25..207 154 28.1 Plus
CG7322-PC 242 CG7322-PC 7..184 22..206 152 30.1 Plus
CG7322-PB 242 CG7322-PB 7..184 22..206 152 30.1 Plus
CG7322-PA 242 CG7322-PA 7..184 22..206 152 30.1 Plus
spidey-PA 321 CG1444-PA 44..259 14..224 152 28.3 Plus
CG10962-PB 249 CG10962-PB 4..208 20..212 149 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16877-PA 261 GI16877-PA 1..261 18..278 1244 88.9 Plus
Dmoj\GI16540-PA 257 GI16540-PA 1..251 18..271 438 35.8 Plus
Dmoj\GI17665-PA 258 GI17665-PA 4..253 20..270 413 33.2 Plus
Dmoj\GI17645-PA 276 GI17645-PA 6..260 22..278 326 28.7 Plus
Dmoj\Adh1-PA 254 GI17644-PA 1..250 18..271 297 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18003-PA 184 GL18003-PA 1..180 18..199 792 86.3 Plus
Dper\GL17859-PA 258 GL17859-PA 1..253 18..271 490 37.4 Plus
Dper\GL26147-PA 256 GL26147-PA 4..250 20..264 357 32.3 Plus
Dper\GL20478-PA 70 GL20478-PA 1..70 209..278 354 92.9 Plus
Dper\Adh-PA 254 GL25993-PA 1..250 18..271 333 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18512-PA 261 GA18512-PA 1..261 18..278 1327 95 Plus
Dpse\GA18471-PA 258 GA18471-PA 1..253 18..271 493 37.4 Plus
Dpse\GA17670-PA 256 GA17670-PA 4..250 20..264 358 32.3 Plus
Dpse\Adhr-PA 278 GA25223-PA 6..258 22..276 333 28.1 Plus
Dpse\Adh-PA 254 GA17214-PA 1..250 18..271 332 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24411-PA 261 GM24411-PA 1..261 18..278 1367 99.2 Plus
Dsec\GM25632-PA 259 GM25632-PA 1..253 18..271 497 38.6 Plus
Dsec\GM25633-PA 267 GM25633-PA 1..250 18..267 452 34.8 Plus
Dsec\GM17449-PA 256 GM17449-PA 4..240 20..257 410 32.8 Plus
Dsec\Adhr-PA 272 GM15667-PA 6..258 22..276 342 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12481-PA 261 GD12481-PA 1..261 18..278 1366 99.2 Plus
Dsim\GD14635-PA 259 GD14635-PA 1..253 18..271 491 38.2 Plus
Dsim\Fbp2-PA 256 GD23602-PA 4..250 20..264 411 32.7 Plus
Dsim\Adhr-PA 272 GD23969-PA 6..258 22..276 342 29.1 Plus
Dsim\GD14637-PA 164 GD14637-PA 6..151 126..271 304 38.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12626-PA 261 GJ12626-PA 1..261 18..278 1228 87.4 Plus
Dvir\GJ17861-PA 257 GJ17861-PA 3..255 19..271 423 33.9 Plus
Dvir\GJ12792-PA 259 GJ12792-PA 1..253 18..271 419 36.3 Plus
Dvir\Adhr-PA 275 GJ18210-PA 6..260 22..278 329 29.1 Plus
Dvir\Adh1-PA 254 GJ18208-PA 1..250 18..271 309 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20840-PA 260 GK20840-PA 1..260 18..277 1243 88.1 Plus
Dwil\GK14485-PA 260 GK14485-PA 1..254 18..271 458 36.2 Plus
Dwil\GK17292-PA 259 GK17292-PA 24..256 41..274 423 35.5 Plus
Dwil\GK24204-PA 256 GK24204-PA 4..250 20..264 417 33.5 Plus
Dwil\GK17293-PA 259 GK17293-PA 1..253 18..271 402 34.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pdh-PA 261 GE22908-PA 1..261 18..278 1362 98.9 Plus
Dyak\GE23094-PA 259 GE23094-PA 1..253 18..271 493 38.2 Plus
Dyak\GE23092-PA 259 GE23092-PA 1..253 18..271 485 37.8 Plus
Dyak\GE23095-PA 260 GE23095-PA 1..254 18..271 454 34.3 Plus
Dyak\GE23093-PA 260 GE23093-PA 1..254 18..271 453 34.6 Plus