Clone HL08079 Report

Search the DGRC for HL08079

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:79
Vector:pOT2
Associated Gene/TranscriptHn-RA
Protein status:HL08079.pep: gold
Preliminary Size:1561
Sequenced Size:1529

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7399 2001-01-01 Release 2 assignment
CG7399 2001-11-09 Blastp of sequenced clone
CG7399 2003-01-01 Sim4 clustering to Release 3
Hn 2008-04-29 Release 5.5 accounting
Hn 2008-08-15 Release 5.9 accounting
Hn 2008-12-18 5.12 accounting

Clone Sequence Records

HL08079.complete Sequence

1529 bp (1529 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069306

> HL08079.complete
GATCGTTCGCCATCGGTTTTATTGTACTTATCAGTGGAGAAACCCGAGAA
TCTTGTGAAAATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAACGCGCG
TAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAGGCCAGG
AACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAGCGGAGC
TTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACCTGGTGC
ATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTTTTCGTG
GAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGATGTGAA
GGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGGATAATG
CCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGATCGTTTC
GCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCATCCTGG
TTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCGACATTG
CCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTACACCAAG
GAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAAGCTGTA
TAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGCTGGTGG
ACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGATGTGTCC
AACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGCTGGACT
ACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCTTCCACT
CCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCGGAACCA
GATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGATCCAGC
TTTTGCCCAATTCAGTCAGGAGATCGGGCTAGCTTCCCTGGGAGCACCCG
ATGATTACATTGAGAAATTGTCCACCATCTTCTGGTTCACTGTTGAGTAC
GGCGTGTGCCGCCAGGAGGGTGAGTTGAAGGCGTACGGAGCTGGTCTGCT
GTCCTCCTACGGGGAACTGGAGTATTGCCTCACGGACAAGCCGCAGCTGA
AGGACTTTGAGCCGGAGGTCACTGGCGTCACCAAGTATCCCATTACTCAG
TTCCAGCCTCTGTACTATGTGGCCGATAGTTTCGAAACCGCCAAGGAGAA
GACCATTAAATTTGCGAACTCGATTCCCCGACCCTTTGGTGTTCGCTACA
ATGCCTATACTCAGAGTGTTGAGGTTCTCGACTCGAAGCCCCAGATTTCG
AATCTGATGGACAACATTAACTCCGAGTTCCAGATTCTTCAGAATGCCGT
TGCCAAGCTGCGCGTCTGAGTAGAATTCATATACATTTTTTACTCCCTCT
CTTTACTTACTATTAAGAATGAATCAAATAATAAATAACATGCAATTATG
TAAGTTTTTGTAAAAAAAAAAAAAAAAAA

HL08079.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hn.b 2113 Hn.b 225..1737 1..1513 7565 100 Plus
Hn-RA 1915 Hn-RA 225..1737 1..1513 7565 100 Plus
Hn.a 2264 Hn.a 225..1737 1..1513 7565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7753656..7754330 89..763 3225 98.5 Plus
chr3L 24539361 chr3L 7754388..7754651 763..1026 1305 99.6 Plus
chr3L 24539361 chr3L 7755008..7755262 1257..1511 1230 98.8 Plus
chr3L 24539361 chr3L 7754717..7754943 1027..1253 1090 98.7 Plus
chr3L 24539361 chr3L 7752662..7752751 1..90 450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7761561..7762235 89..763 3375 100 Plus
3L 28110227 3L 7762293..7762556 763..1026 1320 100 Plus
3L 28110227 3L 7762912..7763168 1257..1513 1285 100 Plus
3L 28110227 3L 7762622..7762851 1027..1256 1150 100 Plus
3L 28110227 3L 7760567..7760656 1..90 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7754661..7755335 89..763 3375 100 Plus
3L 28103327 3L 7755393..7755656 763..1026 1320 100 Plus
3L 28103327 3L 7756012..7756268 1257..1513 1285 100 Plus
3L 28103327 3L 7755722..7755951 1027..1256 1150 100 Plus
3L 28103327 3L 7753667..7753756 1..90 450 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:10:56 has no hits.

HL08079.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:11:57 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7755008..7755262 1257..1511 98   Plus
chr3L 7752662..7752751 1..90 100 -> Plus
chr3L 7753658..7754330 91..763 98 -> Plus
chr3L 7754389..7754651 764..1026 99 -> Plus
chr3L 7754717..7754946 1027..1256 98 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:40 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 61..1419 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:15 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 61..1419 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:10:47 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 61..1419 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:54 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 61..1419 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:01 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 61..1419 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:23 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 91..1601 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:15 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 91..1601 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:10:47 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 115..1625 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:54 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 91..1601 1..1511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:01 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 115..1625 1..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:57 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7760567..7760656 1..90 100 -> Plus
3L 7761563..7762235 91..763 100 -> Plus
3L 7762294..7762556 764..1026 100 -> Plus
3L 7762622..7762851 1027..1256 100 -> Plus
3L 7762912..7763166 1257..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:57 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7760567..7760656 1..90 100 -> Plus
3L 7761563..7762235 91..763 100 -> Plus
3L 7762294..7762556 764..1026 100 -> Plus
3L 7762622..7762851 1027..1256 100 -> Plus
3L 7762912..7763166 1257..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:57 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7760567..7760656 1..90 100 -> Plus
3L 7761563..7762235 91..763 100 -> Plus
3L 7762294..7762556 764..1026 100 -> Plus
3L 7762622..7762851 1027..1256 100 -> Plus
3L 7762912..7763166 1257..1511 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:10:47 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7753667..7753756 1..90 100 -> Plus
arm_3L 7754663..7755335 91..763 100 -> Plus
arm_3L 7755394..7755656 764..1026 100 -> Plus
arm_3L 7755722..7755951 1027..1256 100 -> Plus
arm_3L 7756012..7756266 1257..1511 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:57 Download gff for HL08079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7754663..7755335 91..763 100 -> Plus
3L 7755394..7755656 764..1026 100 -> Plus
3L 7755722..7755951 1027..1256 100 -> Plus
3L 7756012..7756266 1257..1511 100   Plus
3L 7753667..7753756 1..90 100 -> Plus

HL08079.hyp Sequence

Translation from 0 to 1418

> HL08079.hyp
DRSPSVLLYLSVEKPENLVKMYQRQVSFDKPTRVEDSAYIVEGVDIKEAR
NTCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESRSSLRVPGYEFFV
EADGKSGALGKAIEDVKEQCSYFNIISRDYKDNATAVPWFPRRIRDLDRF
ANQILSYGSELDADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVDYTK
EEIETWGIIFRNLTKLYKTHACREYNHVFPLLVDNCGFREDNIPQLEDVS
NFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEP
DVCHELMGHVPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEY
GVCRQEGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQ
FQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQSVEVLDSKPQIS
NLMDNINSEFQILQNAVAKLRV*

HL08079.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-PC 452 CG7399-PC 1..452 21..472 2392 100 Plus
Hn-PA 452 CG7399-PA 1..452 21..472 2392 100 Plus
Hn-PB 447 CG7399-PB 5..447 30..472 2341 99.8 Plus
Trh-PA 555 CG9122-PA 90..508 66..470 1047 50.5 Plus
ple-PA 508 CG10118-PA 77..505 42..471 1022 47.1 Plus

HL08079.pep Sequence

Translation from 60 to 1418

> HL08079.pep
MYQRQVSFDKPTRVEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALAN
ILAIFKKHDINLVHIESRSSLRVPGYEFFVEADGKSGALGKAIEDVKEQC
SYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTD
PEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTH
ACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSS
RDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQ
FSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQEGELKAYGAGLLSSY
GELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIK
FANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL
RV*

HL08079.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10325-PA 452 GF10325-PA 1..452 1..452 2366 96.5 Plus
Dana\GF10077-PA 558 GF10077-PA 93..511 46..450 1064 50.2 Plus
Dana\GF10892-PA 581 GF10892-PA 172..578 46..451 1030 47.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14450-PA 452 GG14450-PA 1..452 1..452 2413 98.7 Plus
Dere\GG14621-PA 559 GG14621-PA 94..512 46..450 1059 50 Plus
Dere\GG15029-PA 581 GG15029-PA 172..578 46..451 1048 47.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14976-PA 452 GH14976-PA 1..452 1..452 2344 95.1 Plus
Dgri\GH15664-PA 578 GH15664-PA 106..533 34..450 1071 49.3 Plus
Dgri\GH15635-PA 574 GH15635-PA 165..571 46..451 1057 47.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-PC 452 CG7399-PC 1..452 1..452 2392 100 Plus
Hn-PA 452 CG7399-PA 1..452 1..452 2392 100 Plus
Hn-PB 447 CG7399-PB 5..447 10..452 2341 99.8 Plus
Trh-PA 555 CG9122-PA 90..508 46..450 1047 50.5 Plus
ple-PA 508 CG10118-PA 77..505 22..451 1022 47.1 Plus
ple-PC 579 CG10118-PC 148..576 22..451 1022 47.1 Plus
ple-PB 579 CG10118-PB 148..576 22..451 1022 47.1 Plus
Hn-PD 178 CG7399-PD 1..178 275..452 935 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13137-PA 452 GI13137-PA 1..452 1..452 2349 95.6 Plus
Dmoj\GI12709-PA 565 GI12709-PA 94..521 34..450 1083 50.3 Plus
Dmoj\GI12682-PA 576 GI12682-PA 167..573 46..451 1068 47.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18039-PA 452 GL18039-PA 1..452 1..452 2348 95.1 Plus
Dper\GL24728-PA 542 GL24728-PA 108..527 46..450 1067 49.4 Plus
Dper\GL13238-PA 575 GL13238-PA 166..572 46..451 1044 47.3 Plus
Dper\GL25460-PA 465 GL25460-PA 156..420 187..450 791 56.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20325-PA 452 GA20325-PA 1..452 1..452 2351 95.1 Plus
Dpse\GA21560-PA 572 GA21560-PA 108..527 46..450 1068 49.4 Plus
Dpse\GA10085-PA 575 GA10085-PA 166..572 46..451 1044 47.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25002-PA 452 GM25002-PA 1..452 1..452 2428 99.8 Plus
Dsec\GM14234-PA 555 GM14234-PA 90..508 46..450 1068 50.2 Plus
Dsec\GM13828-PA 226 GM13828-PA 1..223 229..451 737 59.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14035-PA 452 GD14035-PA 1..452 1..452 2428 99.8 Plus
Dsim\GD13494-PA 555 GD13494-PA 90..508 46..450 1062 50 Plus
Dsim\GD13115-PA 579 GD13115-PA 170..576 46..451 1049 48.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13886-PA 452 GJ13886-PA 1..452 1..452 2361 95.6 Plus
Dvir\GJ12666-PA 576 GJ12666-PA 167..573 46..451 1061 47.3 Plus
Dvir\GJ12694-PA 540 GJ12694-PA 98..496 34..450 1022 49.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21215-PA 452 GK21215-PA 1..452 1..452 2370 96.2 Plus
Dwil\GK16857-PA 580 GK16857-PA 110..528 46..450 1064 50.2 Plus
Dwil\GK12579-PA 576 GK12579-PA 167..573 46..451 1047 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hn-PA 452 GE21640-PA 1..452 1..452 2421 99.3 Plus
Dyak\GE20982-PA 558 GE20982-PA 93..511 46..450 1068 50.5 Plus
Dyak\GE20472-PA 577 GE20472-PA 168..574 46..451 1048 47.9 Plus