BDGP Sequence Production Resources |
Search the DGRC for HL08079
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 80 |
Well: | 79 |
Vector: | pOT2 |
Associated Gene/Transcript | Hn-RA |
Protein status: | HL08079.pep: gold |
Preliminary Size: | 1561 |
Sequenced Size: | 1529 |
Gene | Date | Evidence |
---|---|---|
CG7399 | 2001-01-01 | Release 2 assignment |
CG7399 | 2001-11-09 | Blastp of sequenced clone |
CG7399 | 2003-01-01 | Sim4 clustering to Release 3 |
Hn | 2008-04-29 | Release 5.5 accounting |
Hn | 2008-08-15 | Release 5.9 accounting |
Hn | 2008-12-18 | 5.12 accounting |
1529 bp (1529 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069306
> HL08079.complete GATCGTTCGCCATCGGTTTTATTGTACTTATCAGTGGAGAAACCCGAGAA TCTTGTGAAAATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAACGCGCG TAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAGGCCAGG AACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAGCGGAGC TTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACCTGGTGC ATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTTTTCGTG GAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGATGTGAA GGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGGATAATG CCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGATCGTTTC GCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCATCCTGG TTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCGACATTG CCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTACACCAAG GAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAAGCTGTA TAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGCTGGTGG ACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGATGTGTCC AACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGCTGGACT ACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCTTCCACT CCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCGGAACCA GATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGATCCAGC TTTTGCCCAATTCAGTCAGGAGATCGGGCTAGCTTCCCTGGGAGCACCCG ATGATTACATTGAGAAATTGTCCACCATCTTCTGGTTCACTGTTGAGTAC GGCGTGTGCCGCCAGGAGGGTGAGTTGAAGGCGTACGGAGCTGGTCTGCT GTCCTCCTACGGGGAACTGGAGTATTGCCTCACGGACAAGCCGCAGCTGA AGGACTTTGAGCCGGAGGTCACTGGCGTCACCAAGTATCCCATTACTCAG TTCCAGCCTCTGTACTATGTGGCCGATAGTTTCGAAACCGCCAAGGAGAA GACCATTAAATTTGCGAACTCGATTCCCCGACCCTTTGGTGTTCGCTACA ATGCCTATACTCAGAGTGTTGAGGTTCTCGACTCGAAGCCCCAGATTTCG AATCTGATGGACAACATTAACTCCGAGTTCCAGATTCTTCAGAATGCCGT TGCCAAGCTGCGCGTCTGAGTAGAATTCATATACATTTTTTACTCCCTCT CTTTACTTACTATTAAGAATGAATCAAATAATAAATAACATGCAATTATG TAAGTTTTTGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7753656..7754330 | 89..763 | 3225 | 98.5 | Plus |
chr3L | 24539361 | chr3L | 7754388..7754651 | 763..1026 | 1305 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 7755008..7755262 | 1257..1511 | 1230 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 7754717..7754943 | 1027..1253 | 1090 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 7752662..7752751 | 1..90 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7761561..7762235 | 89..763 | 3375 | 100 | Plus |
3L | 28110227 | 3L | 7762293..7762556 | 763..1026 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 7762912..7763168 | 1257..1513 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 7762622..7762851 | 1027..1256 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 7760567..7760656 | 1..90 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7754661..7755335 | 89..763 | 3375 | 100 | Plus |
3L | 28103327 | 3L | 7755393..7755656 | 763..1026 | 1320 | 100 | Plus |
3L | 28103327 | 3L | 7756012..7756268 | 1257..1513 | 1285 | 100 | Plus |
3L | 28103327 | 3L | 7755722..7755951 | 1027..1256 | 1150 | 100 | Plus |
3L | 28103327 | 3L | 7753667..7753756 | 1..90 | 450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7755008..7755262 | 1257..1511 | 98 | Plus | |
chr3L | 7752662..7752751 | 1..90 | 100 | -> | Plus |
chr3L | 7753658..7754330 | 91..763 | 98 | -> | Plus |
chr3L | 7754389..7754651 | 764..1026 | 99 | -> | Plus |
chr3L | 7754717..7754946 | 1027..1256 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 1..1359 | 61..1419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 1..1359 | 61..1419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 1..1359 | 61..1419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 1..1359 | 61..1419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 1..1359 | 61..1419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 91..1601 | 1..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 91..1601 | 1..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 115..1625 | 1..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 91..1601 | 1..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hn-RA | 115..1625 | 1..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7760567..7760656 | 1..90 | 100 | -> | Plus |
3L | 7761563..7762235 | 91..763 | 100 | -> | Plus |
3L | 7762294..7762556 | 764..1026 | 100 | -> | Plus |
3L | 7762622..7762851 | 1027..1256 | 100 | -> | Plus |
3L | 7762912..7763166 | 1257..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7760567..7760656 | 1..90 | 100 | -> | Plus |
3L | 7761563..7762235 | 91..763 | 100 | -> | Plus |
3L | 7762294..7762556 | 764..1026 | 100 | -> | Plus |
3L | 7762622..7762851 | 1027..1256 | 100 | -> | Plus |
3L | 7762912..7763166 | 1257..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7760567..7760656 | 1..90 | 100 | -> | Plus |
3L | 7761563..7762235 | 91..763 | 100 | -> | Plus |
3L | 7762294..7762556 | 764..1026 | 100 | -> | Plus |
3L | 7762622..7762851 | 1027..1256 | 100 | -> | Plus |
3L | 7762912..7763166 | 1257..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7753667..7753756 | 1..90 | 100 | -> | Plus |
arm_3L | 7754663..7755335 | 91..763 | 100 | -> | Plus |
arm_3L | 7755394..7755656 | 764..1026 | 100 | -> | Plus |
arm_3L | 7755722..7755951 | 1027..1256 | 100 | -> | Plus |
arm_3L | 7756012..7756266 | 1257..1511 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7754663..7755335 | 91..763 | 100 | -> | Plus |
3L | 7755394..7755656 | 764..1026 | 100 | -> | Plus |
3L | 7755722..7755951 | 1027..1256 | 100 | -> | Plus |
3L | 7756012..7756266 | 1257..1511 | 100 | Plus | |
3L | 7753667..7753756 | 1..90 | 100 | -> | Plus |
Translation from 0 to 1418
> HL08079.hyp DRSPSVLLYLSVEKPENLVKMYQRQVSFDKPTRVEDSAYIVEGVDIKEAR NTCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESRSSLRVPGYEFFV EADGKSGALGKAIEDVKEQCSYFNIISRDYKDNATAVPWFPRRIRDLDRF ANQILSYGSELDADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVDYTK EEIETWGIIFRNLTKLYKTHACREYNHVFPLLVDNCGFREDNIPQLEDVS NFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEP DVCHELMGHVPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEY GVCRQEGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQ FQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQSVEVLDSKPQIS NLMDNINSEFQILQNAVAKLRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hn-PC | 452 | CG7399-PC | 1..452 | 21..472 | 2392 | 100 | Plus |
Hn-PA | 452 | CG7399-PA | 1..452 | 21..472 | 2392 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 5..447 | 30..472 | 2341 | 99.8 | Plus |
Trh-PA | 555 | CG9122-PA | 90..508 | 66..470 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 77..505 | 42..471 | 1022 | 47.1 | Plus |
Translation from 60 to 1418
> HL08079.pep MYQRQVSFDKPTRVEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALAN ILAIFKKHDINLVHIESRSSLRVPGYEFFVEADGKSGALGKAIEDVKEQC SYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTD PEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTH ACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSS RDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQ FSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQEGELKAYGAGLLSSY GELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIK FANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL RV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10325-PA | 452 | GF10325-PA | 1..452 | 1..452 | 2366 | 96.5 | Plus |
Dana\GF10077-PA | 558 | GF10077-PA | 93..511 | 46..450 | 1064 | 50.2 | Plus |
Dana\GF10892-PA | 581 | GF10892-PA | 172..578 | 46..451 | 1030 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14450-PA | 452 | GG14450-PA | 1..452 | 1..452 | 2413 | 98.7 | Plus |
Dere\GG14621-PA | 559 | GG14621-PA | 94..512 | 46..450 | 1059 | 50 | Plus |
Dere\GG15029-PA | 581 | GG15029-PA | 172..578 | 46..451 | 1048 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14976-PA | 452 | GH14976-PA | 1..452 | 1..452 | 2344 | 95.1 | Plus |
Dgri\GH15664-PA | 578 | GH15664-PA | 106..533 | 34..450 | 1071 | 49.3 | Plus |
Dgri\GH15635-PA | 574 | GH15635-PA | 165..571 | 46..451 | 1057 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hn-PC | 452 | CG7399-PC | 1..452 | 1..452 | 2392 | 100 | Plus |
Hn-PA | 452 | CG7399-PA | 1..452 | 1..452 | 2392 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 5..447 | 10..452 | 2341 | 99.8 | Plus |
Trh-PA | 555 | CG9122-PA | 90..508 | 46..450 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 77..505 | 22..451 | 1022 | 47.1 | Plus |
ple-PC | 579 | CG10118-PC | 148..576 | 22..451 | 1022 | 47.1 | Plus |
ple-PB | 579 | CG10118-PB | 148..576 | 22..451 | 1022 | 47.1 | Plus |
Hn-PD | 178 | CG7399-PD | 1..178 | 275..452 | 935 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13137-PA | 452 | GI13137-PA | 1..452 | 1..452 | 2349 | 95.6 | Plus |
Dmoj\GI12709-PA | 565 | GI12709-PA | 94..521 | 34..450 | 1083 | 50.3 | Plus |
Dmoj\GI12682-PA | 576 | GI12682-PA | 167..573 | 46..451 | 1068 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18039-PA | 452 | GL18039-PA | 1..452 | 1..452 | 2348 | 95.1 | Plus |
Dper\GL24728-PA | 542 | GL24728-PA | 108..527 | 46..450 | 1067 | 49.4 | Plus |
Dper\GL13238-PA | 575 | GL13238-PA | 166..572 | 46..451 | 1044 | 47.3 | Plus |
Dper\GL25460-PA | 465 | GL25460-PA | 156..420 | 187..450 | 791 | 56.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20325-PA | 452 | GA20325-PA | 1..452 | 1..452 | 2351 | 95.1 | Plus |
Dpse\GA21560-PA | 572 | GA21560-PA | 108..527 | 46..450 | 1068 | 49.4 | Plus |
Dpse\GA10085-PA | 575 | GA10085-PA | 166..572 | 46..451 | 1044 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25002-PA | 452 | GM25002-PA | 1..452 | 1..452 | 2428 | 99.8 | Plus |
Dsec\GM14234-PA | 555 | GM14234-PA | 90..508 | 46..450 | 1068 | 50.2 | Plus |
Dsec\GM13828-PA | 226 | GM13828-PA | 1..223 | 229..451 | 737 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14035-PA | 452 | GD14035-PA | 1..452 | 1..452 | 2428 | 99.8 | Plus |
Dsim\GD13494-PA | 555 | GD13494-PA | 90..508 | 46..450 | 1062 | 50 | Plus |
Dsim\GD13115-PA | 579 | GD13115-PA | 170..576 | 46..451 | 1049 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13886-PA | 452 | GJ13886-PA | 1..452 | 1..452 | 2361 | 95.6 | Plus |
Dvir\GJ12666-PA | 576 | GJ12666-PA | 167..573 | 46..451 | 1061 | 47.3 | Plus |
Dvir\GJ12694-PA | 540 | GJ12694-PA | 98..496 | 34..450 | 1022 | 49.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21215-PA | 452 | GK21215-PA | 1..452 | 1..452 | 2370 | 96.2 | Plus |
Dwil\GK16857-PA | 580 | GK16857-PA | 110..528 | 46..450 | 1064 | 50.2 | Plus |
Dwil\GK12579-PA | 576 | GK12579-PA | 167..573 | 46..451 | 1047 | 47.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Hn-PA | 452 | GE21640-PA | 1..452 | 1..452 | 2421 | 99.3 | Plus |
Dyak\GE20982-PA | 558 | GE20982-PA | 93..511 | 46..450 | 1068 | 50.5 | Plus |
Dyak\GE20472-PA | 577 | GE20472-PA | 168..574 | 46..451 | 1048 | 47.9 | Plus |