Clone HL08109 Report

Search the DGRC for HL08109

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:9
Vector:pOT2
Associated Gene/Transcriptyip2-RA
Protein status:HL08109.pep: gold
Preliminary Size:1496
Sequenced Size:1385

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4600 2001-01-01 Release 2 assignment
CG4600 2001-11-09 Blastp of sequenced clone
CG4600 2003-01-01 Sim4 clustering to Release 3
yip2 2008-04-29 Release 5.5 accounting
yip2 2008-08-15 Release 5.9 accounting
yip2 2008-12-18 5.12 accounting

Clone Sequence Records

HL08109.complete Sequence

1385 bp (1385 high quality bases) assembled on 2001-11-09

GenBank Submission: AY089528

> HL08109.complete
CAGTGCGATAGTCGCCTTTACTTGCATTAATTTATTTGTTGTTTTATTTA
AGAGTGAACCCACCTTAGAAAATGTCTGCCGCAACCAAAGGTATCTATAT
TGTGGCTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGG
GCATCAACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGAT
GCTGCCGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGT
GATCGCGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTC
TCAACTGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTT
TGCGGTTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGT
CGGCGGTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGA
GCCCTTTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGC
TACAATCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAA
GCTGCCCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCA
GTAGGGAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAG
AAGGGTCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACT
TAAGGTCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTC
CCAAGACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAG
AACGGCGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTC
CGCAGTGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGC
CTCTGGCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATC
ATGGGCATTGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGG
CAAGAAACTGGAGGATATTGATCTGATTGAGATCAACGAAGCCTTTGCTG
CCCAGACATTGGCTTGCGCCGATGCCCTGAAGTTGGATACCTCCAAACTG
AATGTGAACGGAGGCGCCATCGCCTTGGGCCATCCTCTGGGTGCCAGTGG
CTCTCGCATCACTGGTCATCTGGTTCATGAGTTGCAGCGCAAGAAGCTAA
AGTACGGCATTGGATCCGCGTGCATTGGTGGTGGTCAGGGCATCGCCCTT
CTCCTCGAGGCTGTCTAATCCTACAGCTTAATGTAATAGGTGCCCTGCAT
TTACACTTAAATTAGTGCTGAAAATTCCGTTTTAAAAATACCCCGATAGC
AATAAAGAAATTATTTTAAAAAAAAAAAAAAAAAA

HL08109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1489 yip2-RA 113..1480 1..1368 6840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9914972..9915902 257..1187 4580 99.5 Plus
chr2L 23010047 chr2L 9915961..9916141 1187..1367 875 98.9 Plus
chr2L 23010047 chr2L 9914542..9914712 87..257 840 99.4 Plus
chr2L 23010047 chr2L 9914198..9914290 1..93 465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916981 257..1187 4655 100 Plus
2L 23513712 2L 9917040..9917221 1187..1368 910 100 Plus
2L 23513712 2L 9915621..9915791 87..257 855 100 Plus
2L 23513712 2L 9915277..9915369 1..93 465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916981 257..1187 4655 100 Plus
2L 23513712 2L 9917040..9917221 1187..1368 910 100 Plus
2L 23513712 2L 9915621..9915791 87..257 855 100 Plus
2L 23513712 2L 9915277..9915369 1..93 465 100 Plus
Blast to na_te.dros performed 2019-03-16 10:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1415..1482 180..249 128 68.6 Plus
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 528..573 113 71.7 Plus

HL08109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:11 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9914198..9914287 1..90 100 -> Plus
chr2L 9914546..9914712 91..257 99 -> Plus
chr2L 9914973..9915901 258..1186 99 -> Plus
chr2L 9915961..9916141 1187..1367 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:43 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 72..1268 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:16 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 72..1268 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:33 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 72..1268 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:55 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 72..1268 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:24 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 72..1268 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:25 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 23..1389 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:16 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 23..1389 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:33 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 25..1391 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:55 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 23..1389 1..1367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:24 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 25..1391 1..1367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:11 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9915277..9915366 1..90 100 -> Plus
2L 9915625..9915791 91..257 100 -> Plus
2L 9916052..9916980 258..1186 100 -> Plus
2L 9917040..9917220 1187..1367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:11 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9915277..9915366 1..90 100 -> Plus
2L 9915625..9915791 91..257 100 -> Plus
2L 9916052..9916980 258..1186 100 -> Plus
2L 9917040..9917220 1187..1367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:11 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9915277..9915366 1..90 100 -> Plus
2L 9915625..9915791 91..257 100 -> Plus
2L 9916052..9916980 258..1186 100 -> Plus
2L 9917040..9917220 1187..1367 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:33 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9915277..9915366 1..90 100 -> Plus
arm_2L 9915625..9915791 91..257 100 -> Plus
arm_2L 9916052..9916980 258..1186 100 -> Plus
arm_2L 9917040..9917220 1187..1367 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:58 Download gff for HL08109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9916052..9916980 258..1186 100 -> Plus
2L 9917040..9917220 1187..1367 100   Plus
2L 9915277..9915366 1..90 100 -> Plus
2L 9915625..9915791 91..257 100 -> Plus

HL08109.hyp Sequence

Translation from 71 to 1267

> HL08109.hyp
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAV*

HL08109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-PA 398 CG4600-PA 1..398 1..398 2005 100 Plus
CG9149-PA 392 CG9149-PA 4..389 8..396 820 43.4 Plus
CG10932-PB 410 CG10932-PB 25..408 8..396 613 35.5 Plus
CG10932-PA 410 CG10932-PA 25..408 8..396 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 41..461 5..396 400 32.1 Plus

HL08109.pep Sequence

Translation from 71 to 1267

> HL08109.pep
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAV*

HL08109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15724-PA 398 GF15724-PA 1..398 1..398 2038 98 Plus
Dana\GF24451-PA 392 GF24451-PA 4..391 8..398 800 43.7 Plus
Dana\GF21242-PA 414 GF21242-PA 29..412 8..396 602 36.8 Plus
Dana\GF12060-PA 470 GF12060-PA 43..462 6..396 418 32.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10063-PA 398 GG10063-PA 1..398 1..398 2042 98.2 Plus
Dere\GG14778-PA 392 GG14778-PA 4..391 8..398 831 43.2 Plus
Dere\GG17603-PA 410 GG17603-PA 25..408 8..396 611 35.8 Plus
Dere\GG19986-PA 469 GG19986-PA 42..461 6..396 415 32.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11301-PA 398 GH11301-PA 1..398 1..398 1901 92.2 Plus
Dgri\GH15449-PA 392 GH15449-PA 4..391 8..398 806 43.5 Plus
Dgri\GH17897-PA 409 GH17897-PA 18..407 2..396 629 36.5 Plus
Dgri\GH20195-PA 405 GH20195-PA 14..397 42..396 389 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-PA 398 CG4600-PA 1..398 1..398 2005 100 Plus
CG9149-PA 392 CG9149-PA 4..389 8..396 820 43.4 Plus
CG10932-PB 410 CG10932-PB 25..408 8..396 613 35.5 Plus
CG10932-PA 410 CG10932-PA 25..408 8..396 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 41..461 5..396 400 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17721-PA 398 GI17721-PA 1..398 1..398 1946 95 Plus
Dmoj\GI13050-PA 392 GI13050-PA 4..391 8..398 828 44.5 Plus
Dmoj\GI15420-PA 408 GI15420-PA 17..406 2..396 623 35.5 Plus
Dmoj\GI20722-PA 469 GI20722-PA 38..461 2..396 435 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18942-PA 398 GL18942-PA 1..398 1..398 2008 96.2 Plus
Dper\GL16175-PA 392 GL16175-PA 4..391 8..398 793 42.5 Plus
Dper\GL14584-PA 412 GL14584-PA 21..410 2..396 621 36.6 Plus
Dper\GL10924-PA 471 GL10924-PA 43..463 5..396 421 32.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18290-PA 398 GA18290-PA 1..398 1..398 2008 96.2 Plus
Dpse\GA21576-PA 392 GA21576-PA 4..391 8..398 798 43 Plus
Dpse\GA10651-PA 412 GA10651-PA 21..410 2..396 623 36.6 Plus
Dpse\GA18273-PA 471 GA18273-PA 43..463 5..396 421 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17755-PA 398 GM17755-PA 1..398 1..398 2050 98.7 Plus
Dsec\GM14397-PA 392 GM14397-PA 4..389 8..396 828 43.7 Plus
Dsec\GM11967-PA 410 GM11967-PA 25..408 8..396 611 35.8 Plus
Dsec\GM12955-PA 311 GM12955-PA 4..304 8..311 572 39.1 Plus
Dsec\GM15500-PA 469 GM15500-PA 42..461 6..396 412 32.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23636-PA 397 GD23636-PA 1..397 1..398 1923 94.5 Plus
Dsim\GD13606-PA 392 GD13606-PA 4..389 8..396 829 43.7 Plus
Dsim\GD24579-PA 410 GD24579-PA 25..408 8..396 611 35.8 Plus
Dsim\GD25003-PA 469 GD25003-PA 42..461 6..396 412 32.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17549-PA 398 GJ17549-PA 1..398 1..398 1958 96 Plus
Dvir\GJ12146-PA 392 GJ12146-PA 4..391 8..398 816 43 Plus
Dvir\GJ16378-PA 408 GJ16378-PA 17..406 2..396 614 36.3 Plus
Dvir\GJ20459-PA 443 GJ20459-PA 12..435 2..396 419 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18280-PA 398 GK18280-PA 1..398 1..398 2012 96 Plus
Dwil\GK20386-PA 392 GK20386-PA 4..391 8..398 798 42.7 Plus
Dwil\GK10115-PA 413 GK10115-PA 22..411 2..396 612 36.9 Plus
Dwil\GK15863-PA 473 GK15863-PA 46..465 6..396 432 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\yip2-PA 398 GE18877-PA 1..398 1..398 2049 98.7 Plus
Dyak\GE21141-PA 392 GE21141-PA 4..389 8..396 809 42.7 Plus
Dyak\GE17503-PA 410 GE17503-PA 25..408 8..396 615 36.1 Plus
Dyak\GE11519-PA 469 GE11519-PA 42..461 6..396 413 32.4 Plus