Clone HL08110 Report

Search the DGRC for HL08110

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:10
Vector:pOT2
Associated Gene/TranscriptZasp66-RA
Protein status:HL08110.pep: gold
Sequenced Size:1189

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Lost to the ancients 2009-06-22 I'm sure there was a reason

Clone Sequence Records

HL08110.complete Sequence

1189 bp assembled on 2009-06-22

GenBank Submission: BT088849.1

> HL08110.complete
AAAAATAAACAACAATAAGACTCGAGCTCGAGCATCCTTTTTGTAGTGAA
TCCTAGTGTAAAGATCTCCGATCTCACCAGCTGCAGCGTTGATTTAAACG
TGACGAAGAAGAGTTTAAATTCAAACACAAAACACACACATTGCAAAAAT
GGAGTACGTTCAGTTCAAAAACGGATCCCCAGTCTACTACAAGGAGCAGC
CAGACCTCAATGAGTGCATTCAATACCAACCCTACCGTACAACTCCGCTG
GTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAGAGTCCTA
CTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGACACGACT
ACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAAG
GTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGCAATTCAA
CTCGCCCATTGGCCTGTACTCCAACAACAACATCGAGGACACCATCAGAT
CCACAGTTCCCTTCGCCACAAGCGAAAGCAATCGCTTGAAGGACAGTCCT
TTGCATCGTCCTTTGCCAACAAAACTTAACGGCTATAAGAAAACTGTCCA
GTACGATCCCAGGAACAGCGAAACCTACAGAGCCATTCAAGAAGAGGGCG
GCTACAGCAACTATGGCCAATCCTCGCCACAGGAAGTGACCATTCCTGTG
CAGACTAAGGTCTATCAGCCCAATAGATTGGTTCCAGGAAAGAAACCAGT
ATCAGCGCCAGTATCCCGGCCGCCGTACAATGTGGTAAACACCCACGATG
AGAACATACGCCAGAGCGGCTCCTTCAATCGTCTCATGTACAGCGTGATT
GGTGCCACCGAGTACTAGAAAGTGCAGCTGCAACACCAGCGACAGCAGCA
ACATCAACATCAACGCAACATCGGCAACATCTGCTGCACTTGTTTTATCT
CCTAACATATTTAGCGGATTTTTATGAAATTCTGTTTAACTTACTCAATA
AATTATATGAAGAACGACAAGAAATTGTGAACCACTAACAAGCTTGATGA
TATAATGGATTGGTAATCAATTGGCATCGAAATAAATTTACGATATAAAC
ACCACTTAACGCCGCCTCAACCTAATTACTGTTTGCATATGCAATAGAAA
ACGTATATAAATTAATTAAATAAAAAAAAAAAAAAAAAA

HL08110.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-RA 1401 Zasp66-RA 62..1242 1..1181 5890 99.9 Plus
Zasp66-RJ 1325 Zasp66-RJ 248..1318 111..1181 5340 99.9 Plus
Zasp66-RI 1390 Zasp66-RI 631..1229 583..1181 2980 99.8 Plus
Zasp66-RI 1390 Zasp66-RI 121..632 1..512 2560 100 Plus
Zasp66-RJ 1325 Zasp66-RJ 1..108 4..111 540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8630302..8630691 782..1171 1920 99.5 Plus
chr3L 24539361 chr3L 8626610..8626816 226..432 1005 99 Plus
chr3L 24539361 chr3L 8629473..8629633 582..742 805 100 Plus
chr3L 24539361 chr3L 8622548..8622666 111..229 595 100 Plus
chr3L 24539361 chr3L 8622298..8622408 1..111 555 100 Plus
chr3L 24539361 chr3L 8627036..8627112 434..510 370 98.7 Plus
chr3L 24539361 chr3L 8627718..8627800 511..593 370 96.4 Plus
chr3L 24539361 chr3L 8630190..8630233 741..784 220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:29:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8638267..8638666 782..1181 1985 99.8 Plus
3L 28110227 3L 8634579..8634785 226..432 1020 99.5 Plus
3L 28110227 3L 8637438..8637598 582..742 805 100 Plus
3L 28110227 3L 8630517..8630635 111..229 595 100 Plus
3L 28110227 3L 8630267..8630377 1..111 555 100 Plus
3L 28110227 3L 8635002..8635081 431..510 400 100 Plus
3L 28110227 3L 8635681..8635763 511..593 370 96.4 Plus
3L 28110227 3L 8638155..8638198 741..784 220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8631367..8631766 782..1181 1985 99.7 Plus
3L 28103327 3L 8627679..8627885 226..432 1020 99.5 Plus
3L 28103327 3L 8630538..8630698 582..742 805 100 Plus
3L 28103327 3L 8623617..8623735 111..229 595 100 Plus
3L 28103327 3L 8623367..8623477 1..111 555 100 Plus
3L 28103327 3L 8628102..8628181 431..510 400 100 Plus
3L 28103327 3L 8628781..8628863 511..593 370 96.3 Plus
3L 28103327 3L 8631255..8631298 741..784 220 100 Plus
Blast to na_te.dros performed 2019-03-15 16:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6890 870..931 186 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2295..2371 862..938 177 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6804 859..938 167 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1512..1587 869..937 166 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6783 875..938 162 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6879 861..938 157 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2761..2840 861..939 155 71.1 Plus
roo 9092 roo DM_ROO 9092bp 1083..1154 861..931 150 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6825 870..938 148 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1092..1273 861..1031 148 59.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3280..3345 870..934 147 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2404 875..938 142 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6839 870..931 140 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2789..2854 874..938 138 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6855 875..938 135 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2461 861..938 133 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2665 876..909 125 85.3 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 528..577 866..918 123 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2484 856..928 117 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1581 874..914 115 75.6 Plus
gypsy10 6006 gypsy10 GYPSY10 6006bp 65..127 471..532 114 68.8 Plus
gypsy10 6006 gypsy10 GYPSY10 6006bp 5707..5769 471..532 114 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2665 861..920 112 68.8 Plus

HL08110.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:04:47 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8622298..8622411 1..113 98 -> Plus
chr3L 8622551..8622666 114..229 100 -> Plus
chr3L 8626614..8626814 230..430 99 -> Plus
chr3L 8627033..8627112 431..510 97 -> Plus
chr3L 8627718..8627789 511..582 100 -> Plus
chr3L 8629474..8629633 583..742 100 -> Plus
chr3L 8630192..8630230 743..781 100 -> Plus
chr3L 8630302..8630393 782..873 100 == Plus
chr3L 8630460..8630673 940..1153 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:56 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG6416-RA 1..720 149..868 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:48:37 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RA 1..720 149..868 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:51:06 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RJ 1..720 149..868 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:15 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RJ 1..720 149..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-22 10:53:56 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG6416-RA 22..1189 1..1171 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:48:37 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RA 60..1230 1..1171 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:06 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RA 25..1195 1..1171 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:15 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
Zasp66-RA 25..1195 1..1171 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:47 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8635681..8635752 511..582 100 -> Plus
3L 8637439..8637598 583..742 100 -> Plus
3L 8638157..8638195 743..781 100 -> Plus
3L 8630520..8630635 114..229 100 -> Plus
3L 8634583..8634783 230..430 100 -> Plus
3L 8635002..8635081 431..510 100 -> Plus
3L 8630267..8630380 1..113 98 -> Plus
3L 8638267..8638656 782..1171 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:47 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8635681..8635752 511..582 100 -> Plus
3L 8637439..8637598 583..742 100 -> Plus
3L 8638157..8638195 743..781 100 -> Plus
3L 8630520..8630635 114..229 100 -> Plus
3L 8634583..8634783 230..430 100 -> Plus
3L 8635002..8635081 431..510 100 -> Plus
3L 8630267..8630380 1..113 98 -> Plus
3L 8638267..8638656 782..1171 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:04:47 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8635681..8635752 511..582 100 -> Plus
3L 8637439..8637598 583..742 100 -> Plus
3L 8638157..8638195 743..781 100 -> Plus
3L 8630520..8630635 114..229 100 -> Plus
3L 8634583..8634783 230..430 100 -> Plus
3L 8635002..8635081 431..510 100 -> Plus
3L 8630267..8630380 1..113 98 -> Plus
3L 8638267..8638656 782..1171 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:06 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8628781..8628852 511..582 100 -> Plus
arm_3L 8630539..8630698 583..742 100 -> Plus
arm_3L 8631257..8631295 743..781 100 -> Plus
arm_3L 8631367..8631756 782..1171 99   Plus
arm_3L 8623367..8623480 1..113 98 -> Plus
arm_3L 8623620..8623735 114..229 100 -> Plus
arm_3L 8627683..8627883 230..430 100 -> Plus
arm_3L 8628102..8628181 431..510 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:15 Download gff for HL08110.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8627683..8627883 230..430 100 -> Plus
3L 8628102..8628181 431..510 100 -> Plus
3L 8628781..8628852 511..582 100 -> Plus
3L 8630539..8630698 583..742 100 -> Plus
3L 8631257..8631295 743..781 100 -> Plus
3L 8631367..8631756 782..1171 99   Plus
3L 8623367..8623480 1..113 98 -> Plus
3L 8623620..8623735 114..229 100 -> Plus

HL08110.pep Sequence

Translation from 148 to 867

> HL08110.pep
MEYVQFKNGSPVYYKEQPDLNECIQYQPYRTTPLVLPGAKVKKDAPTTES
YLRHYPNPAVRAHPGHDYHDSIMKQRVADTMLHKVVGSEADTGRVFHKQF
NSPIGLYSNNNIEDTIRSTVPFATSESNRLKDSPLHRPLPTKLNGYKKTV
QYDPRNSETYRAIQEEGGYSNYGQSSPQEVTIPVQTKVYQPNRLVPGKKP
VSAPVSRPPYNVVNTHDENIRQSGSFNRLMYSVIGATEY*

HL08110.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24342-PA 430 GF24342-PA 191..430 1..239 1230 97.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14334-PA 429 GG14334-PA 191..429 1..239 1263 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15318-PA 149 GH15318-PA 5..149 95..239 697 91 Plus
Dgri\GH22528-PA 181 GH22528-PA 1..122 1..122 637 94.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-PA 239 CG6416-PA 1..239 1..239 1279 100 Plus
Zasp66-PJ 239 CG6416-PJ 1..239 1..239 1279 100 Plus
Zasp66-PF 402 CG6416-PF 177..402 17..239 1136 96 Plus
Zasp66-PE 430 CG6416-PE 205..430 17..239 1136 96 Plus
Zasp66-PI 215 CG6416-PI 1..215 1..239 1118 90 Plus
Zasp66-PK 378 CG6416-PK 177..378 17..239 975 85.4 Plus
Zasp66-PN 406 CG6416-PN 205..406 17..239 975 85.4 Plus
Zasp66-PH 135 CG6416-PH 1..121 1..121 656 100 Plus
Zasp66-PG 165 CG6416-PG 1..121 1..121 656 100 Plus
Zasp66-PM 322 CG6416-PM 177..320 17..157 647 87.5 Plus
Zasp66-PB 298 CG6416-PB 177..284 17..121 513 91.7 Plus
Zasp66-PO 326 CG6416-PO 205..312 17..121 513 91.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12917-PA 429 GI12917-PA 191..429 1..239 1226 95.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10326-PA 417 GL10326-PA 229..373 1..145 757 95.9 Plus
Dper\GL10327-PA 113 GL10327-PA 29..113 156..239 406 94.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19576-PA 240 GA19576-PA 1..240 1..239 1213 95.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25076-PA 429 GM25076-PA 191..429 1..239 1270 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14114-PA 231 GD14114-PA 177..231 185..239 217 78.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13061-PA 429 GJ13061-PA 191..429 1..239 1213 94.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16724-PA 243 GK16724-PA 1..243 1..239 1198 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20762-PA 429 GE20762-PA 191..429 1..239 1265 99.6 Plus

HL08110.hyp Sequence

Translation from 148 to 867

> HL08110.hyp
MEYVQFKNGSPVYYKEQPDLNECIQYQPYRTTPLVLPGAKVKKDAPTTES
YLRHYPNPAVRAHPGHDYHDSIMKQRVADTMLHKVVGSEADTGRVFHKQF
NSPIGLYSNNNIEDTIRSTVPFATSESNRLKDSPLHRPLPTKLNGYKKTV
QYDPRNSETYRAIQEEGGYSNYGQSSPQEVTIPVQTKVYQPNRLVPGKKP
VSAPVSRPPYNVVNTHDENIRQSGSFNRLMYSVIGATEY*

HL08110.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Zasp66-PA 239 CG6416-PA 1..239 1..239 1279 100 Plus
Zasp66-PJ 239 CG6416-PJ 1..239 1..239 1279 100 Plus
Zasp66-PF 402 CG6416-PF 177..402 17..239 1136 96 Plus
Zasp66-PE 430 CG6416-PE 205..430 17..239 1136 96 Plus
Zasp66-PI 215 CG6416-PI 1..215 1..239 1118 90 Plus