BDGP Sequence Production Resources |
Search the DGRC for HL08111
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 81 |
Well: | 11 |
Vector: | pOT2 |
Associated Gene/Transcript | sina-RA |
Protein status: | HL08111.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 2280 |
Gene | Date | Evidence |
---|---|---|
CG9949 | 2001-01-01 | Release 2 assignment |
CG9949 | 2001-07-04 | Blastp of sequenced clone |
CG9949 | 2003-01-01 | Sim4 clustering to Release 3 |
sina | 2008-04-29 | Release 5.5 accounting |
sina | 2008-08-15 | Release 5.9 accounting |
sina | 2008-12-18 | 5.12 accounting |
2280 bp (2280 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060358
> HL08111.complete CCGTAAAGGCTGACTGACTGATAAAAAAGGAAACAAAAAAATAACAAGAA AATAAAATATACACATACACACACACACCAACGCAGCGGGGCACCAATAC CTCGGCACAATTTCTTGGAGGCAGCCTGCCATACAGAAGCACAAGAAAGC CATTGCCGAAGCCACCGGGAGGGCGAAGAACCTGAACCTGGCGAGAATTG CAGGGACCCAGAAGAATTGTAGACACATTCGTGCCGTTGCGAGAACCCTT CCAATGTCCAATAAAATCAACCCGAAGCGCCGCGAACCGACAGCAGCAGC AGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACGAGCACCTCGACCG GATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACACATCCTCGTCGTCC AGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGGGCATGTCCGCCGA CTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGACTATGTGCTACCGC CGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGTGTCCTGTCGCTCC AAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGGCGAATATCCGCAA CCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTCCCGTGCAAGCACT CCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGAAAAGACAGAACAC GAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGTGCCCGGGCGCCAG CTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAGCATCTGATGATGT CGCACAAGAGCATCACAACGCTGCAGGGCGAGGACATCGTGTTCCTGGCC ACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAATGATGCAGTCCTG CTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAGTACGACG GACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGGGTCGCGCAAGGAA GCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAAACCGACGCCGGCT CACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGCGTCGCTTCCGCAA TTCACAACTCGGACTGCCTGGTGTTCGACACGTCGATTGCGCAATTGTTC GCCGACAATGGCAACCTGGGCATTAACGTGACCATATCTCTGGTCTAAAC GCACTGTCAATTCGTCGGGTTCTTTCATTTCTTGTGTTTACTATTCCGAT ACAAATACATATATAGTTTATAGCCCTCTGTTCGCATCAGGCGTCTAACT CGTGGACAGATTGTGAGTCTGGAGATTAAGAAGAAAGAGTTTTGCAGAGT TGTTTTATAAAAATGATTCTCTATTCTAAGAGCCACTTACATGCATATGT ATATATATCTATGGAAATATCAGGCTGCTTCGATTATCACATTCGGCACG ATATCGCAGTTTTCTTTGATTTTTAAGCTAAGACACTCACAATTTTCCAA AGCGAAATGGAAAGCGTATTAAAGCAATTGCTAAGTGATGTTCAGTGTTT ATTGCACACGTTCGTTAAACCTGTAAAACCGCGTTTAAAATTCGTATTTT CATTTTTAGTTTGCACATGACTGTGTGTAAATCTCACTCGTTTGCAGAAA AATGCCAAATATTTTTGGTGAGATTTCGCAGATTTGTATAACACACTTTC CTGTCGAATGCGAAAATCGTGGCTGACCTGTATGTTTGTATGTTTAATCG GTTCGATTGGTACTCTAGTTCTAGGACATGATTTTTCAGTTACCGCACAC ACAATACTATATATTTCAAAGTTTCAGTGTTACCCGTTTTGTTAGTTCAT GGGGTTCTGCTTTAGTTTAATTTAGTTCGTAAGGTCCACACACCTGGAGC AGAGCTGCCTGCGCGTGCCCACGTGCCCACCACCTACTACAGTGAACGCT AGGAACACACAGACCCACTCACCAAAACGAGGAGAACAGCAAGAAAGGCG AGGAGGTCACTCATCCACTCGAACATGTACTGCAAAGTCTAGTTTAGTTA ATGTAAATTATTTTATACAATACTTGTAAATGGTAATAAGTAAAACGAAC AGTTTAACGAAATTAACAAACCTAATAACCCACAAAGAAAAGTAATATTT GATAGCGATAATCTGTAATAACTCGAGAGTTGTTTGAAAGTTGCAGCCTA AACGAAACTGCGACCCGCAATTTTGTTCATGCCAAACCATCACAAAATAA CAAAAACACACTAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16843896..16844027 | 1..132 | 100 | -> | Plus |
chr3L | 16845799..16847928 | 133..2262 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RB | 1..945 | 254..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RB | 1..945 | 254..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 1..945 | 254..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RB | 1..945 | 254..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 1..945 | 254..1198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 1650..3911 | 1..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 1650..3911 | 1..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 644..2905 | 1..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 1650..3911 | 1..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sina-RA | 644..2905 | 1..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16854394..16854525 | 1..132 | 100 | -> | Plus |
3L | 16856297..16858426 | 133..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16854394..16854525 | 1..132 | 100 | -> | Plus |
3L | 16856297..16858426 | 133..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16854394..16854525 | 1..132 | 100 | -> | Plus |
3L | 16856297..16858426 | 133..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16847494..16847625 | 1..132 | 100 | -> | Plus |
arm_3L | 16849397..16851526 | 133..2262 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16847494..16847625 | 1..132 | 100 | -> | Plus |
3L | 16849397..16851526 | 133..2262 | 100 | Plus |
Translation from 253 to 1197
> HL08111.hyp MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA DNGNLGINVTISLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sina-PC | 314 | CG9949-PC | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PB | 314 | CG9949-PB | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PA | 314 | CG9949-PA | 1..314 | 1..314 | 1667 | 100 | Plus |
sinah-PC | 351 | CG13030-PC | 55..346 | 8..314 | 766 | 47.9 | Plus |
CG2681-PA | 626 | CG2681-PA | 123..319 | 1..184 | 199 | 28.4 | Plus |
Translation from 253 to 1197
> HL08111.pep MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA DNGNLGINVTISLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23936-PA | 322 | GF23936-PA | 1..322 | 1..314 | 1656 | 96.3 | Plus |
Dana\GF23937-PA | 328 | GF23937-PA | 69..319 | 60..311 | 762 | 53.6 | Plus |
Dana\GF22449-PA | 623 | GF22449-PA | 163..389 | 23..259 | 181 | 25.6 | Plus |
Dana\GF10226-PA | 407 | GF10226-PA | 108..312 | 73..264 | 156 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\sina-PA | 314 | GG13584-PA | 1..314 | 1..314 | 1689 | 100 | Plus |
Dere\GG13585-PA | 354 | GG13585-PA | 103..349 | 67..314 | 774 | 54 | Plus |
Dere\GG13070-PA | 161 | GG13070-PA | 11..161 | 95..314 | 511 | 53.6 | Plus |
Dere\GG18622-PA | 635 | GG18622-PA | 169..326 | 23..184 | 179 | 29.9 | Plus |
Dere\GG14485-PA | 409 | GG14485-PA | 110..226 | 73..179 | 155 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16597-PA | 311 | GH16597-PA | 1..311 | 1..314 | 1629 | 97.1 | Plus |
Dgri\GH16598-PA | 315 | GH16598-PA | 44..307 | 55..311 | 723 | 50.6 | Plus |
Dgri\GH12778-PA | 666 | GH12778-PA | 237..483 | 67..314 | 171 | 24.5 | Plus |
Dgri\GH16998-PA | 412 | GH16998-PA | 113..229 | 73..179 | 161 | 32.2 | Plus |
Dgri\GH22376-PA | 314 | GH22376-PA | 142..207 | 67..132 | 152 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sina-PC | 314 | CG9949-PC | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PB | 314 | CG9949-PB | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PA | 314 | CG9949-PA | 1..314 | 1..314 | 1667 | 100 | Plus |
sinah-PC | 351 | CG13030-PC | 55..346 | 8..314 | 766 | 47.9 | Plus |
CG2681-PA | 626 | CG2681-PA | 123..319 | 1..184 | 199 | 28.4 | Plus |
CG32486-PD | 412 | CG32486-PD | 27..229 | 15..179 | 193 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12443-PA | 314 | GI12443-PA | 1..314 | 1..314 | 1638 | 97.8 | Plus |
Dmoj\GI12444-PA | 322 | GI12444-PA | 72..316 | 67..312 | 741 | 51.2 | Plus |
Dmoj\GI15871-PA | 558 | GI15871-PA | 106..324 | 41..259 | 167 | 26 | Plus |
Dmoj\GI11411-PA | 407 | GI11411-PA | 109..225 | 73..179 | 156 | 31.4 | Plus |
Dmoj\GI22002-PA | 290 | GI22002-PA | 143..200 | 67..124 | 151 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20852-PA | 314 | GL20852-PA | 1..314 | 1..314 | 1648 | 98.4 | Plus |
Dper\GL20853-PA | 340 | GL20853-PA | 82..333 | 60..312 | 743 | 49.8 | Plus |
Dper\GL19914-PA | 632 | GL19914-PA | 207..396 | 67..259 | 177 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22147-PA | 314 | GA22147-PA | 1..314 | 1..314 | 1648 | 98.4 | Plus |
Dpse\GA11985-PA | 340 | GA11985-PA | 82..333 | 60..312 | 744 | 49.8 | Plus |
Dpse\GA15427-PA | 630 | GA15427-PA | 207..396 | 67..259 | 178 | 27.6 | Plus |
Dpse\GA16940-PA | 411 | GA16940-PA | 112..228 | 73..179 | 152 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25664-PA | 314 | GM25664-PA | 1..314 | 1..314 | 1681 | 99.7 | Plus |
Dsec\GM25665-PA | 352 | GM25665-PA | 56..347 | 8..314 | 786 | 48.2 | Plus |
Dsec\GM11718-PA | 153 | GM11718-PA | 1..102 | 212..314 | 222 | 43.7 | Plus |
Dsec\GM19242-PA | 627 | GM19242-PA | 178..388 | 40..257 | 169 | 24.7 | Plus |
Dsec\GM14088-PA | 412 | GM14088-PA | 113..229 | 73..179 | 152 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14671-PA | 384 | GD14671-PA | 1..384 | 1..314 | 1232 | 76 | Plus |
Dsim\GD14672-PA | 321 | GD14672-PA | 25..316 | 8..314 | 785 | 48.2 | Plus |
Dsim\EG:100G10.2-PA | 627 | GD16617-PA | 201..320 | 67..184 | 169 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\sina-PA | 314 | GJ12342-PA | 1..314 | 1..314 | 1635 | 97.8 | Plus |
Dvir\GJ12343-PA | 313 | GJ12343-PA | 1..307 | 5..312 | 757 | 45.5 | Plus |
Dvir\GJ13607-PA | 406 | GJ13607-PA | 108..224 | 73..179 | 154 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\sina-PA | 331 | GK20872-PA | 1..331 | 1..314 | 1617 | 92.4 | Plus |
Dwil\GK20883-PA | 326 | GK20883-PA | 4..318 | 10..312 | 780 | 45.9 | Plus |
Dwil\GK16374-PA | 652 | GK16374-PA | 165..409 | 10..259 | 174 | 24.9 | Plus |
Dwil\GK12313-PA | 408 | GK12313-PA | 109..225 | 73..179 | 155 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19881-PA | 314 | GE19881-PA | 1..314 | 1..314 | 1689 | 100 | Plus |
Dyak\GE19882-PA | 347 | GE19882-PA | 16..342 | 4..314 | 773 | 45.8 | Plus |
Dyak\GE21673-PA | 408 | GE21673-PA | 109..225 | 73..179 | 154 | 31.4 | Plus |