Clone HL08128 Report

Search the DGRC for HL08128

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:28
Vector:pOT2
Associated Gene/TranscriptCdc42-RA
Protein status:HL08128.pep: gold
Preliminary Size:1300
Sequenced Size:1443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12530 2001-01-01 Release 2 assignment
CG12530 2002-06-07 Blastp of sequenced clone
CG12530 2003-01-01 Sim4 clustering to Release 3
Cdc42 2008-04-29 Release 5.5 accounting
Cdc42 2008-08-15 Release 5.9 accounting
Cdc42 2008-12-18 5.12 accounting

Clone Sequence Records

HL08128.complete Sequence

1443 bp (1443 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119570

> HL08128.complete
ATTGCACACACACTGCCGCCCCGCTCTCCTGGGCTCCGCTCCTCCTCGTT
GATAAGGCGCCGCTGGCGAACGGTCACTCTGGCAGGAGTACGAGCAGGAG
CAGGGAAGCCGCACCCACTAGTCATCCCCCCAGTGTAATCCGGCAAACTA
ACCCCCACTAATCCGCAGGAGTCATCACCCCTCTGCACAACATGCAAACC
ATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTGGGTAAGACATGCCTGCT
CATCTCGTATACAACCAACAAGTTCCCGTCGGAGTACGTGCCCACGGTGT
TCGACAACTATGCGGTCACTGTGATGATCGGCGGTGAGCCCTACACACTG
GGCCTGTTCGATACGGCCGGACAGGAGGACTACGATCGGCTGCGTCCGCT
CTCCTATCCGCAGACGGATGTCTTCCTTGTCTGCTTTTCGGTGGTCAGTC
CCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGGTGCCCGAGATTACACAC
CATTGCCAAAAGACGCCGTTCCTGCTGGTGGGCACACAGATTGATTTGCG
CGACGAGAACAGCACGCTGGAGAAGCTGGCCAAGAACAAGCAGAAGCCCA
TCACCATGGAGCAGGGCGAGAAGCTGGCCAAGGAGCTGAAGGCCGTCAAG
TACGTGGAGTGCTCGGCCTTGACACAGAAGGGCCTGAAAAATGTATTCGA
CGAGGCCATCCTGGCCGCCCTCGAGCCACCAGAGCCCACAAAGAAAAGGA
AGTGCAAATTCTTATAATTCTGCTTTCCTCACACGCGGTATCCCTTTCAT
TCTGGCTTTCTACTATCGCAATGACTCCTTCCCAGCCTCCCGTCGTCGAG
AAGCATTCAATATATAGCCGTATATATATATATATAACATATATATATAT
ATATGTATATATATTGGTCTTGATTTACGTTATTCTGCATTAGCCCAGTA
CTCCATGAGCTATTTCTCCTCGCCGCCATCCGCCTGTGTCCCCACTCCCA
CTCTACTCTTTTTGTCTCACACACCGTCTGTGTCTCCACTTACGCGCGTC
CGCGTATCTGTGTCAGTAGTGTCCGTGCTCCAGCCTCCAGAGCTCTAATC
CCTACCCGGTATTTTGGTCGGTTTCTATGTTTGGTCCACTGTGACCAGGC
GGCTGGGCAGTTGCCCCCAACTCGGGACAGTCTTCCGCCCCACAAGCTTC
AGCTCCAATCCCCGCCAGGATCCAATCGCAGCCAATCGAATCGAAACCCA
GCCGACTTCATTTCTGCTCCCAAACATGTTTTTGGCGCAATTTTCGAATT
AAGTAAAAAGAGGAACCACAATATCAATATAGCGAAAACAAATGATTTAT
ATATAAATATATATATATATATATGTATATATATATATGTTTCTTTATAT
ATATATACAAAGATTAAGGAGAGGCAAAAAAAAAAAAAAAAAA

HL08128.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42.c 1951 Cdc42.c 95..1533 1..1439 7180 99.9 Plus
Cdc42-RB 1528 Cdc42-RB 95..1528 1..1434 7155 99.9 Plus
Cdc42.a 2203 Cdc42.a 268..1538 169..1439 6340 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19587082..19588029 478..1425 4725 99.9 Plus
chrX 22417052 chrX 19586544..19587022 1..479 2380 99.8 Plus
chr3L 24539361 chr3L 1301333..1301853 711..191 610 74.5 Minus
chr3L 24539361 chr3L 7426378..7426611 424..191 465 79.9 Minus
chr3R 27901430 chr3R 23461031..23461154 348..471 200 77.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19698305..19699266 478..1439 4795 99.9 Plus
X 23542271 X 19697767..19698245 1..479 2395 100 Plus
3L 28110227 3L 1301827..1302347 711..191 610 74.5 Minus
3L 28110227 3L 7434278..7434511 424..191 465 79.9 Minus
3R 32079331 3R 27638122..27638245 348..471 200 77.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19706403..19707364 478..1439 4795 99.8 Plus
X 23527363 X 19705865..19706343 1..479 2395 100 Plus
3L 28103327 3L 1302069..1302256 469..282 325 78.1 Minus
3L 28103327 3L 7427476..7427611 326..191 275 80.1 Minus
3L 28103327 3L 7427378..7427454 424..348 250 88.3 Minus
3L 28103327 3L 1301827..1301893 711..645 215 88 Minus
3L 28103327 3L 1302284..1302347 254..191 200 87.5 Minus
3R 31820162 3R 27378953..27379032 348..427 190 82.5 Plus
3L 28103327 3L 7427093..7427157 709..645 175 84.6 Minus
Blast to na_te.dros performed on 2019-03-15 23:53:18 has no hits.

HL08128.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:53:54 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19586544..19587022 1..479 99 -> Plus
chrX 19587084..19588029 480..1425 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:47 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..576 192..767 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:29 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..576 192..767 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:30 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 1..576 192..767 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:59 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..576 192..767 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:06 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 1..576 192..767 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:06 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 43..1467 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:29 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 43..1467 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:30 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..1425 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:59 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 43..1467 1..1425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:06 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 136..1392 169..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:54 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
X 19697767..19698245 1..479 100 -> Plus
X 19698307..19699252 480..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:54 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
X 19697767..19698245 1..479 100 -> Plus
X 19698307..19699252 480..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:54 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
X 19697767..19698245 1..479 100 -> Plus
X 19698307..19699252 480..1425 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:30 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591800..19592278 1..479 100 -> Plus
arm_X 19592340..19593285 480..1425 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:19 Download gff for HL08128.complete
Subject Subject Range Query Range Percent Splice Strand
X 19705865..19706343 1..479 100 -> Plus
X 19706405..19707350 480..1425 99   Plus

HL08128.pep Sequence

Translation from 191 to 766

> HL08128.pep
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFL*

HL08128.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20423-PA 191 GF20423-PA 1..191 1..191 1002 99 Plus
Dana\GF10067-PA 192 GF10067-PA 1..192 1..191 731 69.8 Plus
Dana\GF23788-PA 192 GF23788-PA 1..192 1..191 715 68.2 Plus
Dana\GF16294-PA 195 GF16294-PA 7..193 4..191 665 66 Plus
Dana\GF11290-PA 192 GF11290-PA 1..185 1..187 533 52.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19248-PA 191 GG19248-PA 1..191 1..191 1004 99.5 Plus
Dere\GG14611-PA 192 GG14611-PA 1..192 1..191 733 69.8 Plus
Dere\GG14963-PA 192 GG14963-PA 1..192 1..191 713 68.2 Plus
Dere\GG11563-PA 195 GG11563-PA 7..193 4..191 666 66 Plus
Dere\GG20566-PA 192 GG20566-PA 1..185 1..187 533 52.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12491-PA 191 GH12491-PA 1..191 1..191 992 97.9 Plus
Dgri\GH16006-PA 192 GH16006-PA 1..192 1..191 732 69.8 Plus
Dgri\GH16613-PA 192 GH16613-PA 1..192 1..191 719 68.8 Plus
Dgri\GH19274-PA 195 GH19274-PA 7..193 4..191 678 66.5 Plus
Dgri\GH22067-PA 192 GH22067-PA 1..185 1..187 532 52.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-PD 191 CG12530-PD 1..191 1..191 1000 100 Plus
Cdc42-PC 191 CG12530-PC 1..191 1..191 1000 100 Plus
Cdc42-PA 191 CG12530-PA 1..191 1..191 1000 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..191 721 69.8 Plus
Rac1-PA 192 CG2248-PA 1..192 1..191 721 69.8 Plus
Rac2-PB 192 CG8556-PB 1..192 1..191 702 68.2 Plus
Rac2-PA 192 CG8556-PA 1..192 1..191 702 68.2 Plus
Mtl-PC 195 CG5588-PC 7..193 4..191 657 66 Plus
Mtl-PA 195 CG5588-PA 7..193 4..191 657 66 Plus
Mtl-PB 195 CG5588-PB 7..193 4..191 657 66 Plus
Rho1-PA 192 CG8416-PA 7..192 5..191 529 51.9 Plus
Rho1-PG 192 CG8416-PG 7..192 5..191 529 51.9 Plus
Rho1-PF 192 CG8416-PF 7..192 5..191 529 51.9 Plus
Rho1-PD 192 CG8416-PD 7..192 5..191 529 51.9 Plus
Rho1-PC 192 CG8416-PC 7..192 5..191 529 51.9 Plus
Rho1-PB 192 CG8416-PB 7..192 5..191 529 51.9 Plus
RhoL-PA 190 CG9366-PA 12..190 4..191 516 51.6 Plus
RhoL-PB 214 CG9366-PB 36..214 4..191 516 51.6 Plus
RhoU-PC 582 CG34104-PC 392..577 3..187 388 46 Plus
RhoU-PB 582 CG34104-PB 392..577 3..187 388 46 Plus
RhoBTB-PC 738 CG5701-PC 12..211 2..177 255 37.3 Plus
RhoBTB-PA 745 CG5701-PA 12..211 2..177 255 37.3 Plus
RhoBTB-PB 783 CG5701-PB 12..211 2..177 255 37.3 Plus
Ras85D-PA 189 CG9375-PA 1..189 1..191 224 32 Plus
Rala-PB 197 CG2849-PB 13..169 5..173 215 32.7 Plus
Rala-PC 201 CG2849-PC 13..165 5..169 213 32.9 Plus
Rala-PA 201 CG2849-PA 13..165 5..169 213 32.9 Plus
Ras64B-PA 192 CG1167-PA 3..163 1..173 207 30.3 Plus
Rab10-PA 204 CG17060-PA 11..172 5..178 187 26.1 Plus
Rab3-PB 220 CG7576-PB 23..179 5..173 186 31 Plus
Rab3-PA 220 CG7576-PA 23..179 5..173 186 31 Plus
Rab35-PB 201 CG9575-PB 10..153 5..148 184 31.7 Plus
Rab35-PD 201 CG9575-PD 10..153 5..148 184 31.7 Plus
Rab35-PA 201 CG9575-PA 10..153 5..148 184 31.7 Plus
Rap1-PC 184 CG1956-PC 1..174 1..187 183 26.6 Plus
Rap1-PB 184 CG1956-PB 1..174 1..187 183 26.6 Plus
Rap1-PA 184 CG1956-PA 1..174 1..187 183 26.6 Plus
Ric-PB 264 CG8418-PB 57..212 1..172 178 27 Plus
Ric-PA 264 CG8418-PA 57..212 1..172 178 27 Plus
CG13375-PC 277 CG13375-PC 20..184 5..176 177 26.9 Plus
CG13375-PB 306 CG13375-PB 49..213 5..176 177 26.9 Plus
CG13375-PA 306 CG13375-PA 49..213 5..176 177 26.9 Plus
Rab21-PC 222 CG17515-PC 15..169 5..170 176 28.4 Plus
Rab21-PD 222 CG17515-PD 15..169 5..170 176 28.4 Plus
Rab6-PB 208 CG6601-PB 10..182 1..186 175 28.2 Plus
Rab6-PA 208 CG6601-PA 10..182 1..186 175 28.2 Plus
Ran-PD 216 CG1404-PD 10..142 3..135 175 29.1 Plus
Ran-PC 216 CG1404-PC 10..142 3..135 175 29.1 Plus
Ran-PA 216 CG1404-PA 10..142 3..135 175 29.1 Plus
Ran-PB 216 CG1404-PB 10..142 3..135 175 29.1 Plus
Rap2l-PA 182 CG3204-PA 1..157 1..169 173 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11109-PA 191 GI11109-PA 1..191 1..191 993 97.9 Plus
Dmoj\GI11262-PA 170 GI11262-PA 1..169 1..169 878 98.2 Plus
Dmoj\GI12458-PA 192 GI12458-PA 1..192 1..191 735 69.8 Plus
Dmoj\GI12273-PA 192 GI12273-PA 1..192 1..191 733 69.8 Plus
Dmoj\GI22015-PA 195 GI22015-PA 7..193 4..191 678 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18265-PA 191 GL18265-PA 1..191 1..191 1004 99.5 Plus
Dper\GL24253-PA 192 GL24253-PA 1..192 1..191 713 68.2 Plus
Dper\GL13704-PA 195 GL13704-PA 7..193 4..191 673 66 Plus
Dper\GL16078-PA 146 GL16078-PA 1..142 1..142 583 71.8 Plus
Dper\GL20555-PA 192 GL20555-PA 1..185 1..187 531 52.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11680-PA 191 GA11680-PA 1..191 1..191 1004 99.5 Plus
Dpse\GA15321-PA 192 GA15321-PA 1..192 1..191 733 69.8 Plus
Dpse\GA23612-PA 192 GA23612-PA 1..192 1..191 713 68.2 Plus
Dpse\GA18989-PA 195 GA18989-PA 7..193 4..191 673 66 Plus
Dpse\GA25121-PA 192 GA25121-PA 1..185 1..187 531 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22983-PA 154 GM22983-PA 1..153 1..153 806 99.3 Plus
Dsec\GM14225-PA 192 GM14225-PA 1..192 1..191 733 69.8 Plus
Dsec\GM13759-PA 192 GM13759-PA 1..192 1..191 713 68.2 Plus
Dsec\GM16346-PA 195 GM16346-PA 7..193 4..191 666 66 Plus
Dsec\GM11478-PA 195 GM11478-PA 7..193 4..191 666 66 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17456-PA 191 GD17456-PA 1..191 1..191 1004 99.5 Plus
Dsim\GD13487-PA 192 GD13487-PA 1..192 1..191 733 69.8 Plus
Dsim\GD13056-PA 192 GD13056-PA 1..192 1..191 713 68.2 Plus
Dsim\GD21343-PA 184 GD21343-PA 7..170 4..167 612 67.1 Plus
Dsim\GD11158-PA 192 GD11158-PA 1..185 1..187 533 52.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15962-PA 191 GJ15962-PA 1..191 1..191 994 98.4 Plus
Dvir\GJ12360-PA 192 GJ12360-PA 1..192 1..191 736 69.8 Plus
Dvir\GJ13209-PA 192 GJ13209-PA 1..192 1..191 733 69.8 Plus
Dvir\GJ10465-PA 195 GJ10465-PA 7..193 4..191 678 66.5 Plus
Dvir\GJ22286-PA 192 GJ22286-PA 1..185 1..187 532 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17312-PA 191 GK17312-PA 1..191 1..191 999 98.4 Plus
Dwil\GK20502-PA 192 GK20502-PA 1..192 1..191 732 69.8 Plus
Dwil\GK16805-PA 192 GK16805-PA 1..192 1..191 708 67.7 Plus
Dwil\GK11760-PA 195 GK11760-PA 7..193 4..191 674 65.4 Plus
Dwil\GK23137-PA 192 GK23137-PA 1..185 1..187 533 52.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15867-PA 191 GE15867-PA 1..191 1..191 1004 99.5 Plus
Dyak\GE20972-PA 192 GE20972-PA 1..192 1..191 733 69.8 Plus
Dyak\GE20412-PA 192 GE20412-PA 1..192 1..191 713 68.2 Plus
Dyak\GE23748-PA 195 GE23748-PA 7..193 4..191 666 66 Plus
Dyak\GE11751-PA 192 GE11751-PA 1..185 1..187 533 52.9 Plus

HL08128.hyp Sequence

Translation from 191 to 766

> HL08128.hyp
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFL*

HL08128.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-PD 191 CG12530-PD 1..191 1..191 1000 100 Plus
Cdc42-PC 191 CG12530-PC 1..191 1..191 1000 100 Plus
Cdc42-PA 191 CG12530-PA 1..191 1..191 1000 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..191 721 69.8 Plus
Rac1-PA 192 CG2248-PA 1..192 1..191 721 69.8 Plus