BDGP Sequence Production Resources |
Search the DGRC for HL08167
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 81 |
Well: | 67 |
Vector: | pOT2 |
Associated Gene/Transcript | Hk-RD |
Protein status: | HL08167.pep: gold |
Preliminary Size: | 2643 |
Sequenced Size: | 2535 |
Gene | Date | Evidence |
---|---|---|
CG32688 | 2001-07-04 | Blastp of sequenced clone |
CG32688 | 2003-01-01 | Sim4 clustering to Release 3 |
Hk | 2008-04-29 | Release 5.5 accounting |
Hk | 2008-08-15 | Release 5.9 accounting |
Hk | 2008-12-18 | 5.12 accounting |
2535 bp (2535 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060359
> HL08167.complete CTCGATAGTACGACATCATCATCCTCCACACAGCAGACCTTCCCTGGCAG CGCAGTCGGGGCGGGCAGAGGAGCGTCAGCAGCGGTACCTGGAAGCGGGA CAGCGATAGCGGTTGCAGTAGCAGGAGCGGGAGCGGGACAATCGGCGACA TTGGCGGGGCCGCCGGCAACGGCCGCAGCTGCCACAGCTGCGATCATACC GATTCTGCCGCTCGGCGTTGCAACGCTGCGCGATGATTCCACCGAATCTG AGCAGTCCGTGACCTGTGCGCACAACCAGCTCGATGCCTACCACCGCATC ATGTGCCGGGCTCCCATTGCGTCACTCGACTGTATGGAGGAGTTCAGTGG TACGGGCGGTCATCTTGATTTCGGTCGTTCGATCAGTTTGGGCTCCAATC CGGCGCTACCATTGCGCCATGGATCCACACCAACGCCGGGACTGCGGTAC AAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGAATGTGGGATTGGGTAC CTGGCCGGTATTTTCGCCGGGCGTGAGCGATGACCAGGCGGAGGCAATCC TTAAGCTGGCCATCGAGAGCGGTATCAATCTGTTCGACATCTCGGAGGCG CACTCGGAGACGGAGATCGGCAAGATACTGCAGCGGGCGGGCTGGAAGAG GACCGCCTATGTCATCACCACGAAGGTCTACTGGAGCACCAAGTCGGAGG AACGTGGTCTCTCCCGGAAACACATCATCGAATGTGTTCGTGCCAGTTTG CAGCGATTGCAGCTGCAGTACATCGATATCGTCATCATCCACAAGGCGGA TCCCATGTGTCCCATGGAGGTGGTGCGCGCCATGAGCTACGTGATACAGC AGGGCTGGGCAATGTATTGGGGCACCGCTCGATGGAGCCAGGTGGAGATC ATGGAGGCCTATACCAACTGCCGCCAGTTCAACTGCATCACGCCCATTGT GGAGCAGTCCGAGTACCATATGTTCTGTCGCGAAAAGTGCGAACTCTACC TGCCGGAGATGTACAACAAGATCGGAGTGGGCCTCATGGCCTGGGGTCCA CTCTCGATGGCCCTCAGCGACACCCAGAATGGGGACAAGCTTTTCCTGCC CAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGGACCGAGGACGAGATCA ATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATC GATGAGGGGCGCCGCCACTGCGACCGTCTCCGCGACCTTGCCGCCCTCGC CGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCCATCGCCTGGTCGCTGA AACATGAGCCAGTGCAATGCCTGCTGCTGGGCGCCACATCGGCGGAGCAG CTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGCCACGACTCTCATCGAG CGTTATGCTGGAGCTGGAAAGGATATTGGAAAACAAGCCGGTGCGGCCGC CGATGATCTCGACCTTGGCGCTCCGGTGACAATCAGCGTGCCCGCAGGGG CCGCTCAGCCTGAGCGGTGGCGGACCCTGCGGCGCCGATTCGCCCAAGCA CGAGGATGAGGCCTTCATCGAGGAGGTGGACGCTGCCAAGGACGCTGCCA AGCAAGGCTTCTGCCTCATCCAGTGACAAAAGGAGTCCTTAGATAACGAT AATAAATTTTTGAAAGTGATTAGCAGTAAAACTAGCCTAAGTAGCAATAC CATGACGACAACAATAAGCAAGCAGGAGCAGCAACAGCAGCAGCAGCAGC AACAACAGCAGCAACATCTCCAGCCTCAGCAGTATGTGCAACTACAGCAG CAACATTTGATGGCCAGCGGCAGCACCAGCGATTCGGCGGCAGCTGTTCC CATTGCAGCTGAACTCCAGTTCGACTCCCTGAATAACAATAACAACAACA ACAATAATAATACCAATGGCAGTCCGGAACAGGCACTGCCCACCAGCGAT GAACGCCAAAAACGTCGCTCCCTGCTCAACTTTAAGTCCCTGGACTTTCA TCTAAAGTCCCTGTACAGTGGCCTACGGAGTAACTCAGGAACAACTCCAC CCAGTCAACCGAATAGCTCTGTTCCGGCGGTGGATCAGCCGCAGCGTAGA ATGCCCTATTTGCGGGTGGAGAGTGTTGATCCCGAGGAGCCAAGAGGATC AGTTCTGCCCGGACATTCGCCCAGCTTTCTGTCACCCTACAGTGGCGTTG GCGGTGGAGCCGGAAGCCTGCAGTTGCCCTCAAACGATGGAGGCACCATC AGGAGATCCTCAACATCCGACATTGTTAATTGCAGACGGGGAGGGGGAGC AGGGGGATCGGGCGGAGGAGCAGCCTCTGCCCAGGACAGCAGGAGGCCGA GCACATCGGATTTGCTCAGAAAGGCAAGGGAACGAAAGGGCAGTGAGGCC AGGATGGGCAGAAGTGTCTCCCACAGTGGGCTAACCAGGGGCGGACCCGG CGGAGGAGGTGGTGGCCTGGGCGGGAGACGAACCAGCATGGCCTTCTAAA AACAGAAATAATAGTGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hyperkinetic-RB | 2724 | Hyperkinetic-RB | 46..2574 | 1..2529 | 12645 | 100 | Plus |
Hyperkinetic.a | 3569 | Hyperkinetic.a | 1247..3403 | 373..2529 | 10785 | 100 | Plus |
Hyperkinetic-RA | 3550 | Hyperkinetic-RA | 1241..3400 | 370..2529 | 10785 | 99.9 | Plus |
Hyperkinetic.a | 3569 | Hyperkinetic.a | 1201..1249 | 303..351 | 245 | 100 | Plus |
Hyperkinetic-RA | 3550 | Hyperkinetic-RA | 1201..1246 | 303..348 | 230 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 10130031..10131175 | 2516..1372 | 5650 | 99.6 | Minus |
chrX | 22417052 | chrX | 10132277..10132616 | 1159..820 | 1700 | 100 | Minus |
chrX | 22417052 | chrX | 10145598..10145902 | 305..1 | 1525 | 100 | Minus |
chrX | 22417052 | chrX | 10133013..10133334 | 694..373 | 1490 | 97.5 | Minus |
chrX | 22417052 | chrX | 10131303..10131521 | 1377..1159 | 1095 | 100 | Minus |
chrX | 22417052 | chrX | 10132711..10132838 | 820..693 | 640 | 100 | Minus |
chrX | 22417052 | chrX | 10134404..10134476 | 375..303 | 365 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 10238394..10239551 | 2529..1372 | 5790 | 100 | Minus |
X | 23542271 | X | 10240680..10241019 | 1159..820 | 1700 | 100 | Minus |
X | 23542271 | X | 10241416..10241737 | 694..373 | 1610 | 100 | Minus |
X | 23542271 | X | 10254000..10254304 | 305..1 | 1525 | 100 | Minus |
X | 23542271 | X | 10239679..10239897 | 1377..1159 | 1095 | 100 | Minus |
X | 23542271 | X | 10241114..10241241 | 820..693 | 640 | 100 | Minus |
X | 23542271 | X | 10242808..10242880 | 375..303 | 365 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 10246492..10247649 | 2529..1372 | 5790 | 100 | Minus |
X | 23527363 | X | 10248778..10249117 | 1159..820 | 1700 | 100 | Minus |
X | 23527363 | X | 10249514..10249835 | 694..373 | 1610 | 100 | Minus |
X | 23527363 | X | 10262098..10262402 | 305..1 | 1525 | 100 | Minus |
X | 23527363 | X | 10247777..10247995 | 1377..1159 | 1095 | 100 | Minus |
X | 23527363 | X | 10249212..10249339 | 820..693 | 640 | 100 | Minus |
X | 23527363 | X | 10250906..10250978 | 375..303 | 365 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..49 | 1882..1912 | 128 | 90.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7087 | 1882..1912 | 128 | 90.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2419 | 1800..1921 | 121 | 58.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10132278..10132615 | 821..1158 | 100 | <- | Minus |
chrX | 10132711..10132838 | 693..820 | 100 | <- | Minus |
chrX | 10131303..10131521 | 1159..1377 | 100 | <- | Minus |
chrX | 10133015..10133333 | 374..692 | 97 | <- | Minus |
chrX | 10134406..10134476 | 303..373 | 100 | <- | Minus |
chrX | 10145601..10145902 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..1179 | 301..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..1179 | 301..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RF | 619..2097 | 1..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..1179 | 301..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RF | 619..2097 | 1..1479 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..2516 | 1..2516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..2516 | 1..2516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RF | 1112..3627 | 1..2516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RB | 1..2516 | 1..2516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hk-RD | 1370..3885 | 1..2516 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10238407..10239545 | 1378..2516 | 100 | <- | Minus |
X | 10239679..10239897 | 1159..1377 | 100 | <- | Minus |
X | 10240681..10241018 | 821..1158 | 100 | <- | Minus |
X | 10241114..10241241 | 693..820 | 100 | <- | Minus |
X | 10241418..10241736 | 374..692 | 100 | <- | Minus |
X | 10242810..10242880 | 303..373 | 100 | <- | Minus |
X | 10254003..10254304 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10238407..10239545 | 1378..2516 | 100 | <- | Minus |
X | 10239679..10239897 | 1159..1377 | 100 | <- | Minus |
X | 10240681..10241018 | 821..1158 | 100 | <- | Minus |
X | 10241114..10241241 | 693..820 | 100 | <- | Minus |
X | 10241418..10241736 | 374..692 | 100 | <- | Minus |
X | 10242810..10242880 | 303..373 | 100 | <- | Minus |
X | 10254003..10254304 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10238407..10239545 | 1378..2516 | 100 | <- | Minus |
X | 10239679..10239897 | 1159..1377 | 100 | <- | Minus |
X | 10240681..10241018 | 821..1158 | 100 | <- | Minus |
X | 10241114..10241241 | 693..820 | 100 | <- | Minus |
X | 10241418..10241736 | 374..692 | 100 | <- | Minus |
X | 10242810..10242880 | 303..373 | 100 | <- | Minus |
X | 10254003..10254304 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10132440..10133578 | 1378..2516 | 100 | <- | Minus |
arm_X | 10133712..10133930 | 1159..1377 | 100 | <- | Minus |
arm_X | 10134714..10135051 | 821..1158 | 100 | <- | Minus |
arm_X | 10135147..10135274 | 693..820 | 100 | <- | Minus |
arm_X | 10135451..10135769 | 374..692 | 100 | <- | Minus |
arm_X | 10136843..10136913 | 303..373 | 100 | <- | Minus |
arm_X | 10148036..10148337 | 1..302 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10262101..10262402 | 1..302 | 100 | Minus | |
X | 10248779..10249116 | 821..1158 | 100 | <- | Minus |
X | 10249212..10249339 | 693..820 | 100 | <- | Minus |
X | 10246505..10247643 | 1378..2516 | 100 | <- | Minus |
X | 10247777..10247995 | 1159..1377 | 100 | <- | Minus |
X | 10249516..10249834 | 374..692 | 100 | <- | Minus |
X | 10250908..10250978 | 303..373 | 100 | <- | Minus |
Translation from 0 to 1478
> HL08167.hyp LDSTTSSSSTQQTFPGSAVGAGRGASAAVPGSGTAIAVAVAGAGAGQSAT LAGPPATAAAATAAIIPILPLGVATLRDDSTESEQSVTCAHNQLDAYHRI MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hk-PF | 698 | CG43388-PF | 207..698 | 1..492 | 2552 | 100 | Plus |
Hk-PG | 392 | CG43388-PG | 1..392 | 101..492 | 2063 | 100 | Plus |
Hk-PD | 392 | CG43388-PD | 1..392 | 101..492 | 2063 | 100 | Plus |
Hk-PI | 393 | CG43388-PI | 1..393 | 101..492 | 2051 | 99.7 | Plus |
Hk-PK | 548 | CG43388-PK | 132..548 | 71..492 | 1998 | 91.5 | Plus |
Translation from 300 to 1478
> HL08167.pep MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22636-PA | 543 | GF22636-PA | 130..501 | 2..380 | 1964 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18937-PA | 560 | GG18937-PA | 178..560 | 2..392 | 2051 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12855-PA | 624 | GH12855-PA | 212..583 | 2..380 | 1972 | 96.1 | Plus |
Dgri\GH14263-PA | 329 | GH14263-PA | 11..215 | 56..251 | 154 | 25 | Plus |
Dgri\GH12681-PA | 348 | GH12681-PA | 14..179 | 40..195 | 149 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hk-PG | 392 | CG43388-PG | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PF | 698 | CG43388-PF | 307..698 | 1..392 | 2063 | 100 | Plus |
Hk-PD | 392 | CG43388-PD | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PI | 393 | CG43388-PI | 1..393 | 1..392 | 2051 | 99.7 | Plus |
Hk-PK | 548 | CG43388-PK | 166..548 | 2..392 | 1992 | 98 | Plus |
Hk-PM | 887 | CG43388-PM | 166..547 | 2..392 | 1985 | 97.7 | Plus |
Hk-PL | 596 | CG43388-PL | 166..547 | 2..392 | 1985 | 97.7 | Plus |
Hk-PE | 547 | CG43388-PE | 166..547 | 2..392 | 1985 | 97.7 | Plus |
Hk-PH | 374 | CG43388-PH | 8..374 | 26..392 | 1924 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14946-PA | 607 | GI14946-PA | 195..566 | 2..380 | 1967 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15939-PA | 607 | GL15939-PA | 193..564 | 2..380 | 1967 | 96.8 | Plus |
Dper\GL14486-PA | 53 | GL14486-PA | 1..43 | 246..288 | 212 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17075-PA | 581 | GA17075-PA | 199..581 | 2..392 | 2042 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11329-PA | 544 | GM11329-PA | 162..544 | 2..392 | 2046 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Hk-PA | 560 | GD24649-PA | 162..518 | 2..380 | 1859 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18975-PA | 602 | GJ18975-PA | 190..561 | 2..380 | 1965 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16425-PA | 591 | GK16425-PA | 208..591 | 2..392 | 2028 | 96.4 | Plus |
Dwil\GK11670-PA | 344 | GK11670-PA | 14..179 | 40..195 | 159 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15409-PA | 555 | GE15409-PA | 173..555 | 2..392 | 2050 | 98 | Plus |