Clone HL08167 Report

Search the DGRC for HL08167

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:67
Vector:pOT2
Associated Gene/TranscriptHk-RD
Protein status:HL08167.pep: gold
Preliminary Size:2643
Sequenced Size:2535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32688 2001-07-04 Blastp of sequenced clone
CG32688 2003-01-01 Sim4 clustering to Release 3
Hk 2008-04-29 Release 5.5 accounting
Hk 2008-08-15 Release 5.9 accounting
Hk 2008-12-18 5.12 accounting

Clone Sequence Records

HL08167.complete Sequence

2535 bp (2535 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060359

> HL08167.complete
CTCGATAGTACGACATCATCATCCTCCACACAGCAGACCTTCCCTGGCAG
CGCAGTCGGGGCGGGCAGAGGAGCGTCAGCAGCGGTACCTGGAAGCGGGA
CAGCGATAGCGGTTGCAGTAGCAGGAGCGGGAGCGGGACAATCGGCGACA
TTGGCGGGGCCGCCGGCAACGGCCGCAGCTGCCACAGCTGCGATCATACC
GATTCTGCCGCTCGGCGTTGCAACGCTGCGCGATGATTCCACCGAATCTG
AGCAGTCCGTGACCTGTGCGCACAACCAGCTCGATGCCTACCACCGCATC
ATGTGCCGGGCTCCCATTGCGTCACTCGACTGTATGGAGGAGTTCAGTGG
TACGGGCGGTCATCTTGATTTCGGTCGTTCGATCAGTTTGGGCTCCAATC
CGGCGCTACCATTGCGCCATGGATCCACACCAACGCCGGGACTGCGGTAC
AAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGAATGTGGGATTGGGTAC
CTGGCCGGTATTTTCGCCGGGCGTGAGCGATGACCAGGCGGAGGCAATCC
TTAAGCTGGCCATCGAGAGCGGTATCAATCTGTTCGACATCTCGGAGGCG
CACTCGGAGACGGAGATCGGCAAGATACTGCAGCGGGCGGGCTGGAAGAG
GACCGCCTATGTCATCACCACGAAGGTCTACTGGAGCACCAAGTCGGAGG
AACGTGGTCTCTCCCGGAAACACATCATCGAATGTGTTCGTGCCAGTTTG
CAGCGATTGCAGCTGCAGTACATCGATATCGTCATCATCCACAAGGCGGA
TCCCATGTGTCCCATGGAGGTGGTGCGCGCCATGAGCTACGTGATACAGC
AGGGCTGGGCAATGTATTGGGGCACCGCTCGATGGAGCCAGGTGGAGATC
ATGGAGGCCTATACCAACTGCCGCCAGTTCAACTGCATCACGCCCATTGT
GGAGCAGTCCGAGTACCATATGTTCTGTCGCGAAAAGTGCGAACTCTACC
TGCCGGAGATGTACAACAAGATCGGAGTGGGCCTCATGGCCTGGGGTCCA
CTCTCGATGGCCCTCAGCGACACCCAGAATGGGGACAAGCTTTTCCTGCC
CAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGGACCGAGGACGAGATCA
ATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATC
GATGAGGGGCGCCGCCACTGCGACCGTCTCCGCGACCTTGCCGCCCTCGC
CGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCCATCGCCTGGTCGCTGA
AACATGAGCCAGTGCAATGCCTGCTGCTGGGCGCCACATCGGCGGAGCAG
CTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGCCACGACTCTCATCGAG
CGTTATGCTGGAGCTGGAAAGGATATTGGAAAACAAGCCGGTGCGGCCGC
CGATGATCTCGACCTTGGCGCTCCGGTGACAATCAGCGTGCCCGCAGGGG
CCGCTCAGCCTGAGCGGTGGCGGACCCTGCGGCGCCGATTCGCCCAAGCA
CGAGGATGAGGCCTTCATCGAGGAGGTGGACGCTGCCAAGGACGCTGCCA
AGCAAGGCTTCTGCCTCATCCAGTGACAAAAGGAGTCCTTAGATAACGAT
AATAAATTTTTGAAAGTGATTAGCAGTAAAACTAGCCTAAGTAGCAATAC
CATGACGACAACAATAAGCAAGCAGGAGCAGCAACAGCAGCAGCAGCAGC
AACAACAGCAGCAACATCTCCAGCCTCAGCAGTATGTGCAACTACAGCAG
CAACATTTGATGGCCAGCGGCAGCACCAGCGATTCGGCGGCAGCTGTTCC
CATTGCAGCTGAACTCCAGTTCGACTCCCTGAATAACAATAACAACAACA
ACAATAATAATACCAATGGCAGTCCGGAACAGGCACTGCCCACCAGCGAT
GAACGCCAAAAACGTCGCTCCCTGCTCAACTTTAAGTCCCTGGACTTTCA
TCTAAAGTCCCTGTACAGTGGCCTACGGAGTAACTCAGGAACAACTCCAC
CCAGTCAACCGAATAGCTCTGTTCCGGCGGTGGATCAGCCGCAGCGTAGA
ATGCCCTATTTGCGGGTGGAGAGTGTTGATCCCGAGGAGCCAAGAGGATC
AGTTCTGCCCGGACATTCGCCCAGCTTTCTGTCACCCTACAGTGGCGTTG
GCGGTGGAGCCGGAAGCCTGCAGTTGCCCTCAAACGATGGAGGCACCATC
AGGAGATCCTCAACATCCGACATTGTTAATTGCAGACGGGGAGGGGGAGC
AGGGGGATCGGGCGGAGGAGCAGCCTCTGCCCAGGACAGCAGGAGGCCGA
GCACATCGGATTTGCTCAGAAAGGCAAGGGAACGAAAGGGCAGTGAGGCC
AGGATGGGCAGAAGTGTCTCCCACAGTGGGCTAACCAGGGGCGGACCCGG
CGGAGGAGGTGGTGGCCTGGGCGGGAGACGAACCAGCATGGCCTTCTAAA
AACAGAAATAATAGTGAAAAAAAAAAAAAAAAAAA

HL08167.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Hyperkinetic-RB 2724 Hyperkinetic-RB 46..2574 1..2529 12645 100 Plus
Hyperkinetic.a 3569 Hyperkinetic.a 1247..3403 373..2529 10785 100 Plus
Hyperkinetic-RA 3550 Hyperkinetic-RA 1241..3400 370..2529 10785 99.9 Plus
Hyperkinetic.a 3569 Hyperkinetic.a 1201..1249 303..351 245 100 Plus
Hyperkinetic-RA 3550 Hyperkinetic-RA 1201..1246 303..348 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10130031..10131175 2516..1372 5650 99.6 Minus
chrX 22417052 chrX 10132277..10132616 1159..820 1700 100 Minus
chrX 22417052 chrX 10145598..10145902 305..1 1525 100 Minus
chrX 22417052 chrX 10133013..10133334 694..373 1490 97.5 Minus
chrX 22417052 chrX 10131303..10131521 1377..1159 1095 100 Minus
chrX 22417052 chrX 10132711..10132838 820..693 640 100 Minus
chrX 22417052 chrX 10134404..10134476 375..303 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10238394..10239551 2529..1372 5790 100 Minus
X 23542271 X 10240680..10241019 1159..820 1700 100 Minus
X 23542271 X 10241416..10241737 694..373 1610 100 Minus
X 23542271 X 10254000..10254304 305..1 1525 100 Minus
X 23542271 X 10239679..10239897 1377..1159 1095 100 Minus
X 23542271 X 10241114..10241241 820..693 640 100 Minus
X 23542271 X 10242808..10242880 375..303 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10246492..10247649 2529..1372 5790 100 Minus
X 23527363 X 10248778..10249117 1159..820 1700 100 Minus
X 23527363 X 10249514..10249835 694..373 1610 100 Minus
X 23527363 X 10262098..10262402 305..1 1525 100 Minus
X 23527363 X 10247777..10247995 1377..1159 1095 100 Minus
X 23527363 X 10249212..10249339 820..693 640 100 Minus
X 23527363 X 10250906..10250978 375..303 365 100 Minus
Blast to na_te.dros performed 2019-03-15 23:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 19..49 1882..1912 128 90.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7057..7087 1882..1912 128 90.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2419 1800..1921 121 58.6 Plus

HL08167.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:57:14 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10132278..10132615 821..1158 100 <- Minus
chrX 10132711..10132838 693..820 100 <- Minus
chrX 10131303..10131521 1159..1377 100 <- Minus
chrX 10133015..10133333 374..692 97 <- Minus
chrX 10134406..10134476 303..373 100 <- Minus
chrX 10145601..10145902 1..302 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:08:11 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..1179 301..1479 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:37 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..1179 301..1479 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:53 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 619..2097 1..1479 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:33 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..1179 301..1479 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:59 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 619..2097 1..1479 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:08:10 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..2516 1..2516 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:37 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..2516 1..2516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:53 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 1112..3627 1..2516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:33 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..2516 1..2516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:59 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RD 1370..3885 1..2516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:14 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
X 10238407..10239545 1378..2516 100 <- Minus
X 10239679..10239897 1159..1377 100 <- Minus
X 10240681..10241018 821..1158 100 <- Minus
X 10241114..10241241 693..820 100 <- Minus
X 10241418..10241736 374..692 100 <- Minus
X 10242810..10242880 303..373 100 <- Minus
X 10254003..10254304 1..302 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:14 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
X 10238407..10239545 1378..2516 100 <- Minus
X 10239679..10239897 1159..1377 100 <- Minus
X 10240681..10241018 821..1158 100 <- Minus
X 10241114..10241241 693..820 100 <- Minus
X 10241418..10241736 374..692 100 <- Minus
X 10242810..10242880 303..373 100 <- Minus
X 10254003..10254304 1..302 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:14 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
X 10238407..10239545 1378..2516 100 <- Minus
X 10239679..10239897 1159..1377 100 <- Minus
X 10240681..10241018 821..1158 100 <- Minus
X 10241114..10241241 693..820 100 <- Minus
X 10241418..10241736 374..692 100 <- Minus
X 10242810..10242880 303..373 100 <- Minus
X 10254003..10254304 1..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:53 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10132440..10133578 1378..2516 100 <- Minus
arm_X 10133712..10133930 1159..1377 100 <- Minus
arm_X 10134714..10135051 821..1158 100 <- Minus
arm_X 10135147..10135274 693..820 100 <- Minus
arm_X 10135451..10135769 374..692 100 <- Minus
arm_X 10136843..10136913 303..373 100 <- Minus
arm_X 10148036..10148337 1..302 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:21 Download gff for HL08167.complete
Subject Subject Range Query Range Percent Splice Strand
X 10262101..10262402 1..302 100   Minus
X 10248779..10249116 821..1158 100 <- Minus
X 10249212..10249339 693..820 100 <- Minus
X 10246505..10247643 1378..2516 100 <- Minus
X 10247777..10247995 1159..1377 100 <- Minus
X 10249516..10249834 374..692 100 <- Minus
X 10250908..10250978 303..373 100 <- Minus

HL08167.hyp Sequence

Translation from 0 to 1478

> HL08167.hyp
LDSTTSSSSTQQTFPGSAVGAGRGASAAVPGSGTAIAVAVAGAGAGQSAT
LAGPPATAAAATAAIIPILPLGVATLRDDSTESEQSVTCAHNQLDAYHRI
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*

HL08167.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-PF 698 CG43388-PF 207..698 1..492 2552 100 Plus
Hk-PG 392 CG43388-PG 1..392 101..492 2063 100 Plus
Hk-PD 392 CG43388-PD 1..392 101..492 2063 100 Plus
Hk-PI 393 CG43388-PI 1..393 101..492 2051 99.7 Plus
Hk-PK 548 CG43388-PK 132..548 71..492 1998 91.5 Plus

HL08167.pep Sequence

Translation from 300 to 1478

> HL08167.pep
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*

HL08167.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22636-PA 543 GF22636-PA 130..501 2..380 1964 97.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18937-PA 560 GG18937-PA 178..560 2..392 2051 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12855-PA 624 GH12855-PA 212..583 2..380 1972 96.1 Plus
Dgri\GH14263-PA 329 GH14263-PA 11..215 56..251 154 25 Plus
Dgri\GH12681-PA 348 GH12681-PA 14..179 40..195 149 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-PG 392 CG43388-PG 1..392 1..392 2063 100 Plus
Hk-PF 698 CG43388-PF 307..698 1..392 2063 100 Plus
Hk-PD 392 CG43388-PD 1..392 1..392 2063 100 Plus
Hk-PI 393 CG43388-PI 1..393 1..392 2051 99.7 Plus
Hk-PK 548 CG43388-PK 166..548 2..392 1992 98 Plus
Hk-PM 887 CG43388-PM 166..547 2..392 1985 97.7 Plus
Hk-PL 596 CG43388-PL 166..547 2..392 1985 97.7 Plus
Hk-PE 547 CG43388-PE 166..547 2..392 1985 97.7 Plus
Hk-PH 374 CG43388-PH 8..374 26..392 1924 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14946-PA 607 GI14946-PA 195..566 2..380 1967 95.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15939-PA 607 GL15939-PA 193..564 2..380 1967 96.8 Plus
Dper\GL14486-PA 53 GL14486-PA 1..43 246..288 212 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17075-PA 581 GA17075-PA 199..581 2..392 2042 97.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11329-PA 544 GM11329-PA 162..544 2..392 2046 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hk-PA 560 GD24649-PA 162..518 2..380 1859 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18975-PA 602 GJ18975-PA 190..561 2..380 1965 96.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16425-PA 591 GK16425-PA 208..591 2..392 2028 96.4 Plus
Dwil\GK11670-PA 344 GK11670-PA 14..179 40..195 159 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15409-PA 555 GE15409-PA 173..555 2..392 2050 98 Plus