Clone HL08191 Report

Search the DGRC for HL08191

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:81
Well:91
Vector:pOT2
Associated Gene/TranscriptCchl-RA
Protein status:HL08191.pep: gold
Preliminary Size:1300
Sequenced Size:1187

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6022 2001-01-01 Release 2 assignment
CG6022 2002-05-16 Blastp of sequenced clone
CG6022 2003-01-01 Sim4 clustering to Release 3
Cchl 2008-04-29 Release 5.5 accounting
Cchl 2008-08-15 Release 5.9 accounting
Cchl 2008-12-18 5.12 accounting

Clone Sequence Records

HL08191.complete Sequence

1187 bp (1187 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118889

> HL08191.complete
CCTGACCACAACCTCGCTGCATTTTGGGCTCAAAAGTTCTAACGATGAAC
TAACGAAAATATAAATCAAAATTTAAGGCGAAAGGCTCCAGGAGAAGATC
GACAAATATCGAGAGTTGTGACCATTAGGATCGAATTTTGTTATTAACCA
ATCCCCAGCAGAAATGGGCAATACAGCCATCACCCGAGTGCAAATGGAGG
CCACGAAGAGTGTGCCGGTGGACCACGCCAAGTACATGAGCGGCAGTGGT
GCCCCGCCACCAGAATGCCCCATGCATCAGAAGCATGGAGATGCAAAATC
GGCCTCCGCCGTACCCCCACATCCCAAGATGCAGGCCGCTTCCGAATGTC
CGGTGCAGCACGACAACAGCGACGTTAATCCGCTGAATATGATGCCACCG
GCAAACCAACAGCCGGCGGCAGATCAGCCCTTTCCACTGCCCACCGACCG
CCAGACGTCGACCATTCCCAAAGTCACCGAGGATGGCAGCGTTCAATTCT
GGCAGTATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAGGGC
TGGCGCTGGAAGACCGAGGACGTATCGCAAAAGGACATGGGCGACATCAT
ACGCATCCACAATGCCAACAACGAGCAGGCCTGGCAGGAGGTACTTAAGT
GGGAGGCGCTTCACGCCAAGGAATGCGGCAATCCGCGCCTCAAGAGTTTC
GGTGGCAAGGCCAAGGACTTCAGTCCGCGCGCTCGATTCCGCAGCTGGCT
GGGATACGAGCTGCCATTCGATAGGCATGACTGGATAGTCGATCGCTGCG
GCAAGGATGTGCGCTACGTCATCGACTACTACGACGGTGGACTGGTGGAC
AAAGACTACCGCTTTGCCCTGCTGGATGTGCGCCCAGCCATGGACTCCGT
GGACAACGTTTGGGACAGAATGCGCGTAGCTTACATGCGCTGGAAGTACG
AGCTGTTTGAGAAGTTTGGCAGCGCGGATGGCGGCAAAGTGACCGCTGGT
AGCGACTAGATGGAATGCATATTTAGATGATCGCTATAGGTACAAAATCG
GCTTAAGTTATCGAATGGATGGAAGAGGGAGTTTGGTTAAATGCGTTTAA
GACGCTGCGAAGCGAAACGATGTTGAGCCCTCTCTTTAAATAAATGTTGA
ATCTTGACTTCTGAACACCAAAAAAAAAAAAAAAAAA

HL08191.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cchl-RA 1446 Cchl-RA 184..1356 1..1173 5865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17850211..17850829 753..135 3050 99.5 Minus
chr3R 27901430 chr3R 17849738..17850154 1169..753 2025 99 Minus
chr3R 27901430 chr3R 17850923..17851056 134..1 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22026448..22027066 753..135 3095 100 Minus
3R 32079331 3R 22025971..22026391 1173..753 2105 100 Minus
3R 32079331 3R 22027160..22027293 134..1 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21767279..21767897 753..135 3095 100 Minus
3R 31820162 3R 21766802..21767222 1173..753 2105 100 Minus
3R 31820162 3R 21767991..21768124 134..1 670 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:15:12 has no hits.

HL08191.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:15:59 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17849738..17850153 754..1169 99 <- Minus
chr3R 17850211..17850829 135..753 99 <- Minus
chr3R 17850923..17851056 1..134 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:53 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 1..846 164..1009 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:53 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 1..846 164..1009 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:48 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 1..846 164..1009 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:31 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 1..846 164..1009 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:07 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 1..846 164..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:23 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 184..1352 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:53 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 184..1352 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:48 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 188..1356 1..1169 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:31 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 184..1352 1..1169 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:07 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
Cchl-RA 188..1356 1..1169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:59 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22025975..22026390 754..1169 100 <- Minus
3R 22026448..22027066 135..753 100 <- Minus
3R 22027160..22027293 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:59 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22025975..22026390 754..1169 100 <- Minus
3R 22026448..22027066 135..753 100 <- Minus
3R 22027160..22027293 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:59 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22025975..22026390 754..1169 100 <- Minus
3R 22026448..22027066 135..753 100 <- Minus
3R 22027160..22027293 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:48 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17851697..17852112 754..1169 100 <- Minus
arm_3R 17852170..17852788 135..753 100 <- Minus
arm_3R 17852882..17853015 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:48 Download gff for HL08191.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21766806..21767221 754..1169 100 <- Minus
3R 21767279..21767897 135..753 100 <- Minus
3R 21767991..21768124 1..134 100   Minus

HL08191.pep Sequence

Translation from 163 to 1008

> HL08191.pep
MGNTAITRVQMEATKSVPVDHAKYMSGSGAPPPECPMHQKHGDAKSASAV
PPHPKMQAASECPVQHDNSDVNPLNMMPPANQQPAADQPFPLPTDRQTST
IPKVTEDGSVQFWQYPSQQMFWNAMLRKGWRWKTEDVSQKDMGDIIRIHN
ANNEQAWQEVLKWEALHAKECGNPRLKSFGGKAKDFSPRARFRSWLGYEL
PFDRHDWIVDRCGKDVRYVIDYYDGGLVDKDYRFALLDVRPAMDSVDNVW
DRMRVAYMRWKYELFEKFGSADGGKVTAGSD*

HL08191.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16950-PA 278 GF16950-PA 1..278 1..281 1370 90.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12543-PA 281 GG12543-PA 1..281 1..281 1484 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19837-PA 281 GH19837-PA 1..281 1..281 1315 85.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cchl-PB 281 CG6022-PB 1..281 1..281 1552 100 Plus
Cchl-PA 281 CG6022-PA 1..281 1..281 1552 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22295-PA 282 GI22295-PA 1..282 1..281 1359 89.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23514-PA 283 GL23514-PA 1..281 1..278 1319 87.9 Plus
Dper\GL23867-PA 177 GL23867-PA 42..177 128..272 460 60.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19303-PA 283 GA19303-PA 1..281 1..278 1319 87.9 Plus
Dpse\GA27084-PA 177 GA27084-PA 42..177 128..272 448 58.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23672-PA 281 GM23672-PA 1..281 1..281 1506 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18482-PA 281 GD18482-PA 1..281 1..281 1506 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24087-PA 272 GJ24087-PA 1..272 1..281 1330 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13004-PA 280 GK13004-PA 1..280 1..281 1371 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24063-PA 281 GE24063-PA 1..281 1..281 1490 97.9 Plus

HL08191.hyp Sequence

Translation from 163 to 1008

> HL08191.hyp
MGNTAITRVQMEATKSVPVDHAKYMSGSGAPPPECPMHQKHGDAKSASAV
PPHPKMQAASECPVQHDNSDVNPLNMMPPANQQPAADQPFPLPTDRQTST
IPKVTEDGSVQFWQYPSQQMFWNAMLRKGWRWKTEDVSQKDMGDIIRIHN
ANNEQAWQEVLKWEALHAKECGNPRLKSFGGKAKDFSPRARFRSWLGYEL
PFDRHDWIVDRCGKDVRYVIDYYDGGLVDKDYRFALLDVRPAMDSVDNVW
DRMRVAYMRWKYELFEKFGSADGGKVTAGSD*

HL08191.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cchl-PB 281 CG6022-PB 1..281 1..281 1552 100 Plus
Cchl-PA 281 CG6022-PA 1..281 1..281 1552 100 Plus