Clone IP01012 Report

Search the DGRC for IP01012

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:10
Well:12
Vector:pOT2
Associated Gene/Transcriptnau-RB
Protein status:IP01012.pep: gold
Preliminary Size:1534
Sequenced Size:1450

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10250 2005-01-01 Successful iPCR screen
nau 2008-04-29 Release 5.5 accounting
nau 2008-08-15 Release 5.9 accounting
nau 2008-12-18 5.12 accounting

Clone Sequence Records

IP01012.complete Sequence

1450 bp (1450 high quality bases) assembled on 2006-03-09

GenBank Submission: BT022208

> IP01012.complete
AAGGCGGTACACACACTCGCGTACGGTCCGCAAATCGAAGTCGAAAAATA
TTTTTGAAAATGTCGGAGGTTTTTACAAAGCATCATTAAAGTGTAACCAA
CTAATTAAGGTTCTATTTTAAAAATCCCGAAAGTGAAACTATAACAAATT
AAATTAAATAGAAACCACAGCCTAAAACTTGTGTGTAACCATAACTCATA
AATTTGTGTTAATGACCTAGCATACCTAGAAAAAGAGCTTAAACCACGTT
AAAAATGGTAATAATCAACTGACTAAATTAACTGTGCCATCGTAATTAGT
ATCAGCAATTAAATTCAGCAACTTGTTGAACTACCAAAATTGTTTTGTAA
AATATAACAAAATCGTAGTGAAGTGAAAAATGACCAAGTATAATAGTGGC
AGCAGTGAAATGCCTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGG
CTATGGTCAGCCGACACATCCTGGATACGGATTTAGCGCCTATAGCCAAC
AGAATCCGATAGCCCATCCCGGCCAGAATCCACACCAGACACTGCAGAAT
TTCTTTAGCCGCTTCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGG
AGCGGCTTCCATCTCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTC
ATGCGAATCATAATCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATG
ACACCGTCGCCCATCTACACCACCGACTACGATGACGAGAACAGCAGTCT
CAGCTCCGAGGAGCACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAAT
CCTCCAGACCATGCCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGC
GTCACCGTGGACCGTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACT
GCGAAAGGTTAACGAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCA
ATCCCAACCAGCGCCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAG
TATATCGAGAGCCTGGAGGATCTGCTACAGGAATCCAGTACCACACGCGA
TGGCGACAACCTGGCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATT
ATCTGAGCTCCTATGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTAC
AACAAACATATGGAGAAATATGACTTTGATGGCAATGCCAATGGCTCCAG
TTTGGACTGTCTAAATCTGATTGTTCAGAGCATCAATAAGAGCACCACGA
GTCCCATTCAAAATAAGGCCACGCCCTCCGCTTCAGATACCCAATCGCCG
CCCTCATCCGGAGCAACTGCACCCACTTCTCTGCACGTGAACTTCAAACG
GAAGTGCAGCACTTAGCACTTAAGTATCAGCACCTTAGGCAATTGTAAAG
CTATTTTTAAGAGGATACACGAGATACCCAGTGACCCGAATAGGCCTTAA

IP01012.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 1520 nau-RB 23..1472 1..1450 7250 100 Plus
nau-RA 1532 nau-RA 23..1194 1..1172 5860 100 Plus
nau-RA 1532 nau-RA 1206..1484 1172..1450 1395 100 Plus
CG10300-RA 1533 CG10300-RA 1068..1346 1450..1172 1395 100 Minus
CG10300-RA 1533 CG10300-RA 1414..1481 1172..1105 340 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19540846..19541754 909..1 4410 99 Minus
chr3R 27901430 chr3R 19536268..19536544 1448..1172 1385 100 Minus
chr3R 27901430 chr3R 19539923..19540048 1031..906 630 100 Minus
chr3R 27901430 chr3R 19539771..19539847 1105..1029 370 98.7 Minus
chr3R 27901430 chr3R 19536612..19536679 1172..1105 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23717427..23718335 909..1 4545 100 Minus
3R 32079331 3R 23712862..23713140 1450..1172 1395 100 Minus
3R 32079331 3R 23716500..23716625 1031..906 630 100 Minus
3R 32079331 3R 23716363..23716439 1105..1029 385 100 Minus
3R 32079331 3R 23713208..23713275 1172..1105 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23458258..23459166 909..1 4545 100 Minus
3R 31820162 3R 23453693..23453971 1450..1172 1395 100 Minus
3R 31820162 3R 23457331..23457456 1031..906 630 100 Minus
3R 31820162 3R 23457194..23457270 1105..1029 385 100 Minus
3R 31820162 3R 23454039..23454106 1172..1105 340 100 Minus
Blast to na_te.dros performed 2019-03-15 17:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 738..828 164..75 119 60.4 Minus

IP01012.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:55:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19536266..19536543 1173..1450 100 <- Minus
chr3R 19536612..19536678 1106..1172 100 <- Minus
chr3R 19539771..19539845 1031..1105 98 <- Minus
chr3R 19539924..19540046 908..1030 100 <- Minus
chr3R 19540848..19541754 1..907 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:13:55 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 1..999 380..1366 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:14:50 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 1..987 380..1366 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:50:21 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 1..987 380..1366 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:59:15 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 1..999 380..1366 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 1..987 380..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:12:18 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 23..1482 1..1448 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:14:50 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 23..1470 1..1448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:50:21 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 23..1472 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:59:15 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 23..1482 1..1448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 23..1472 1..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23712862..23713139 1173..1450 100 <- Minus
3R 23713208..23713274 1106..1172 100 <- Minus
3R 23716363..23716437 1031..1105 100 <- Minus
3R 23716501..23716623 908..1030 100 <- Minus
3R 23717429..23718335 1..907 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23712862..23713139 1173..1450 100 <- Minus
3R 23713208..23713274 1106..1172 100 <- Minus
3R 23716363..23716437 1031..1105 100 <- Minus
3R 23716501..23716623 908..1030 100 <- Minus
3R 23717429..23718335 1..907 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:20 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23712862..23713139 1173..1450 100 <- Minus
3R 23713208..23713274 1106..1172 100 <- Minus
3R 23716363..23716437 1031..1105 100 <- Minus
3R 23716501..23716623 908..1030 100 <- Minus
3R 23717429..23718335 1..907 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:50:21 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19538584..19538861 1173..1450 100 <- Minus
arm_3R 19538930..19538996 1106..1172 100 <- Minus
arm_3R 19542085..19542159 1031..1105 100 <- Minus
arm_3R 19542223..19542345 908..1030 100 <- Minus
arm_3R 19543151..19544057 1..907 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:34:49 Download gff for IP01012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23453693..23453970 1173..1450 100 <- Minus
3R 23454039..23454105 1106..1172 100 <- Minus
3R 23457194..23457268 1031..1105 100 <- Minus
3R 23457332..23457454 908..1030 100 <- Minus
3R 23458260..23459166 1..907 100   Minus

IP01012.hyp Sequence

Translation from 379 to 1365

> IP01012.hyp
MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQN
PHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHNPVELD
KPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWAC
KACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVE
ILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYL
EDKLSFYNKHMEKYDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPS
ASDTQSPPSSGATAPTSLHVNFKRKCST*

IP01012.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
nau-PB 328 CG10250-PB 1..328 1..328 1722 100 Plus
nau-PA 332 CG10250-PA 1..332 1..328 1707 98.8 Plus

IP01012.pep Sequence

Translation from 379 to 1365

> IP01012.pep
MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQN
PHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHNPVELD
KPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWAC
KACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVE
ILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYL
EDKLSFYNKHMEKYDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPS
ASDTQSPPSSGATAPTSLHVNFKRKCST*

IP01012.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18746-PA 334 GF18746-PA 1..334 1..328 1413 81.9 Plus
Dana\GF18422-PA 269 GF18422-PA 129..269 96..248 154 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12413-PA 332 GG12413-PA 1..332 1..328 1585 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13904-PA 335 GH13904-PA 1..335 1..328 1060 64.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
nau-PB 328 CG10250-PB 1..328 1..328 1722 100 Plus
nau-PA 332 CG10250-PA 1..332 1..328 1707 98.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24830-PA 345 GI24830-PA 1..345 1..328 1084 64.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13832-PA 330 GL13832-PA 1..330 1..328 1245 77.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10192-PA 330 GA10192-PA 1..330 1..328 1297 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23547-PA 332 GM23547-PA 1..332 1..328 1602 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18361-PA 332 GD18361-PA 1..332 1..328 1609 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24474-PA 324 GJ24474-PA 1..324 1..328 1109 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22777-PA 337 GK22777-PA 1..337 1..328 1015 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23932-PA 332 GE23932-PA 1..332 1..328 1561 91.3 Plus