Clone IP01054 Report

Search the DGRC for IP01054

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:10
Well:54
Vector:pOT2
Associated Gene/TranscriptCG11085-RA
Protein status:IP01054.pep: gold
Preliminary Size:822
Sequenced Size:1576

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11085 2005-01-01 Successful iPCR screen
CG11085 2008-04-29 Release 5.5 accounting
CG11085 2008-08-15 Release 5.9 accounting
CG11085 2008-12-18 5.12 accounting

Clone Sequence Records

IP01054.complete Sequence

1576 bp (1576 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022201

> IP01054.complete
GCGCTTAGCGGTTCAGTTACAGTTACTTTCTGTCCGTCTGTCTGTGTGAA
TGTGTGTGTGCGTGTTTCGTACTGGAAAATTCGATTACGCGTAGAACAGA
TCGAAGGCGCAATTATAATCGCTAAATTTGCACAGCACTGCCGTCGGCCA
AACGCCAAAGGATAAAATAAAAAGGGATCATCAAATAAAAGCCTTCAAAG
CCACTTAACAAATAAACAAGGACAACGGATTAATTTTTGTTATTGTTGCA
ACGGGATTTCTAGTGCAAAATGTTTCAAATGTGCCAGTTACTTTGAAAAT
CTGATCTAAAACAAACACACTTAAGCACCGCTTTTGCCATAAGGACTGCA
GATCCATCAAAATGCAGAGCTCAAAATCTTTTTTAATACGCGATCTTCTG
GGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTCTCCAA
CGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTCGACGG
CTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCAGATTC
ACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACAAGGGG
CCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGGTGGAG
GAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCGTGGCT
GCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGGGATGC
CAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGGCTATG
CGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGACGCCGC
CGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAGTTCCG
GTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGAAACGC
TCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCCGGACC
AAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCATCAGGC
GACCATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGGCGGAC
TCGGCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCGCCGCT
GCTGCAGCGGCTGCCAGCAATCCTTGCAATTTTCTCACTTCCGCCGCAGC
GGCGGCCATTTTCCGTAATGTCGGCTATGTCCACGGATGTCCCATGTAGG
AGCCACGCCCCAAACTCTCCCATAATACCATTTTCCCCAGCTGCCTGTGT
ATATAATGCGTATGAAGAAAACCGTTTTTGTGCAATAACCGATCGGGACA
AATTAATGAAAGTCAAGCGATGTGCTGATATTTACCAAGCATACCCGATA
TTATTATTATAATACGTACTTAACAATATAATCATAAAAATAAGCGTAGT
CGAATTAATTAATTGTATTATAAAACTAAAAAATTTTTTTTTTCACATCG
CACTCTATGGAATTTTTTTTTGGCCAGAATAAACATTCAATTGCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

IP01054.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1576 CG11085-RA 31..1576 1..1546 7730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12511625..12512173 996..1544 2670 99.1 Plus
chrX 22417052 chrX 12510596..12511171 434..997 2605 97.2 Plus
chrX 22417052 chrX 12507239..12507680 1..434 1995 97.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 434..997 2820 100 Plus
X 23542271 X 12620668..12621218 996..1546 2755 100 Plus
X 23542271 X 12616316..12616749 1..434 2170 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12627749..12628312 434..997 2820 100 Plus
X 23527363 X 12628766..12629316 996..1546 2755 100 Plus
X 23527363 X 12624414..12624847 1..434 2170 100 Plus
Blast to na_te.dros performed 2019-03-16 10:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1063..1188 1398..1520 144 60.3 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1077..1181 1398..1498 136 64.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1154..1249 1399..1495 131 62.2 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 3029..3076 73..26 114 70.8 Minus

IP01054.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:19:43 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12507239..12507680 1..434 97 -> Plus
chrX 12510597..12511170 435..996 94 -> Plus
chrX 12511626..12512173 997..1544 91   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:02 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 362..1249 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:56 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 362..1249 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:01 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 362..1249 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:38 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 362..1249 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:00 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 362..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:29:15 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..1544 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:56 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..1544 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:01 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..1544 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:38 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..1544 1..1544 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:00 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..1544 1..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:43 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
X 12616316..12616749 1..434 100 -> Plus
X 12619652..12620213 435..996 100 -> Plus
X 12620669..12621216 997..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:43 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
X 12616316..12616749 1..434 100 -> Plus
X 12619652..12620213 435..996 100 -> Plus
X 12620669..12621216 997..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:19:43 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
X 12616316..12616749 1..434 100 -> Plus
X 12619652..12620213 435..996 100 -> Plus
X 12620669..12621216 997..1544 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:01 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12510349..12510782 1..434 100 -> Plus
arm_X 12513685..12514246 435..996 100 -> Plus
arm_X 12514702..12515249 997..1544 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:12 Download gff for IP01054.complete
Subject Subject Range Query Range Percent Splice Strand
X 12624414..12624847 1..434 100 -> Plus
X 12627750..12628311 435..996 100 -> Plus
X 12628767..12629314 997..1544 100   Plus

IP01054.pep Sequence

Translation from 361 to 1248

> IP01054.pep
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPM*

IP01054.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21379-PA 313 GF21379-PA 1..313 1..295 964 72.9 Plus
Dana\GF16414-PA 667 GF16414-PA 552..612 159..219 232 63.9 Plus
Dana\B-H1-PA 943 GF22335-PA 688..780 124..226 225 49.5 Plus
Dana\GF17487-PA 728 GF17487-PA 371..438 154..221 207 48.5 Plus
Dana\GF23351-PA 530 GF23351-PA 430..506 151..230 205 47.5 Plus
Dana\B-H1-PA 943 GF22335-PA 371..424 158..211 174 61.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17730-PA 272 GG17730-PA 5..272 25..295 1351 97.4 Plus
Dere\GG19116-PA 551 GG19116-PA 278..370 124..226 229 49.5 Plus
Dere\GG14462-PA 663 GG14462-PA 549..608 160..219 227 63.3 Plus
Dere\GG19114-PA 650 GG19114-PA 383..451 158..226 225 62.3 Plus
Dere\GG11670-PA 520 GG11670-PA 420..493 151..227 204 48.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24130-PA 281 GH24130-PA 1..281 1..295 1008 78 Plus
Dgri\GH13609-PA 719 GH13609-PA 606..665 160..219 231 63.3 Plus
Dgri\GH24903-PA 571 GH24903-PA 284..376 124..226 226 51.9 Plus
Dgri\GH24902-PA 648 GH24902-PA 372..441 157..226 221 61.4 Plus
Dgri\GH18901-PA 545 GH18901-PA 445..521 151..230 205 47.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 295 CG11085-PA 1..295 1..295 1527 100 Plus
B-H2-PA 645 CG5488-PA 293..501 65..283 266 37.1 Plus
B-H1-PA 544 CG5529-PA 210..424 104..289 258 35.8 Plus
B-H2-PB 303 CG5488-PB 4..159 124..283 245 42.4 Plus
slou-PA 659 CG6534-PA 523..631 122..254 244 42.9 Plus
slou-PB 698 CG6534-PB 523..631 122..254 244 42.9 Plus
lab-PB 213 CG1264-PB 15..143 86..218 218 40.9 Plus
lab-PA 629 CG1264-PA 431..559 86..218 218 40.9 Plus
unpg-PA 485 CG1650-PA 290..376 129..217 216 51.7 Plus
otp-PJ 374 CG10036-PJ 38..176 80..220 212 35 Plus
otp-PK 416 CG10036-PK 38..176 80..220 212 35 Plus
otp-PI 367 CG10036-PI 38..169 80..220 208 35.5 Plus
otp-PE 409 CG10036-PE 38..169 80..220 208 35.5 Plus
Dr-PA 515 CG1897-PA 277..491 22..230 199 32.4 Plus
NK7.1-PD 721 CG8524-PD 354..498 130..270 190 34.4 Plus
NK7.1-PC 721 CG8524-PC 354..498 130..270 190 34.4 Plus
NK7.1-PB 721 CG8524-PB 354..498 130..270 190 34.4 Plus
NK7.1-PA 721 CG8524-PA 354..498 130..270 190 34.4 Plus
lms-PC 378 CG13424-PC 8..152 61..226 184 33.7 Plus
lms-PB 378 CG13424-PB 8..152 61..226 184 33.7 Plus
ems-PA 494 CG2988-PA 319..448 105..220 184 39.4 Plus
Hmx-PE 592 CG43748-PE 365..532 49..224 184 29.8 Plus
Hmx-PC 592 CG43748-PC 365..532 49..224 184 29.8 Plus
Hmx-PD 718 CG43748-PD 365..532 49..224 184 29.8 Plus
C15-PA 339 CG7937-PA 216..287 159..230 182 48.6 Plus
exex-PA 525 CG8254-PA 438..503 159..224 181 57.6 Plus
CG34031-PC 219 CG34031-PC 124..197 148..224 180 48.1 Plus
Dfd-PA 586 CG2189-PA 363..427 157..221 179 49.2 Plus
repo-PA 612 CG31240-PA 217..366 93..222 178 34 Plus
Scr-PB 417 CG1030-PB 108..385 15..221 177 24.7 Plus
Scr-PA 417 CG1030-PA 108..385 15..221 177 24.7 Plus
lbe-PA 479 CG6545-PA 351..461 158..267 177 41.7 Plus
lbl-PA 372 CG6570-PA 249..321 158..234 176 49.4 Plus
lbl-PC 410 CG6570-PC 249..321 158..234 176 49.4 Plus
vnd-PB 577 CG6172-PB 265..460 41..220 176 28.8 Plus
vnd-PA 723 CG6172-PA 411..606 41..220 176 28.8 Plus
Rx-PB 904 CG10052-PB 464..648 57..251 175 29 Plus
bap-PA 382 CG7902-PA 157..233 143..218 173 49.4 Plus
al-PA 408 CG3935-PA 30..146 100..221 173 37.1 Plus
H2.0-PA 418 CG11607-PA 264..373 118..242 173 35.2 Plus
ro-PB 350 CG6348-PB 148..305 107..267 171 33.9 Plus
ro-PA 350 CG6348-PA 148..305 107..267 171 33.9 Plus
E5-PA 524 CG9930-PA 301..387 158..248 170 44 Plus
tin-PA 416 CG7895-PA 284..358 131..217 167 44.8 Plus
bsh-PC 429 CG10604-PC 275..336 161..222 167 53.2 Plus
bsh-PB 429 CG10604-PB 275..336 161..222 167 53.2 Plus
scro-PF 307 CG17594-PF 58..162 130..228 165 40 Plus
scro-PA 468 CG17594-PA 219..323 130..228 165 40 Plus
eve-PA 376 CG2328-PA 71..182 161..271 164 39.7 Plus
pb-PD 772 CG31481-PD 188..277 160..249 164 38.9 Plus
HHEX-PA 323 CG7056-PA 137..279 105..257 163 32.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16386-PA 185 GI16386-PA 32..185 144..295 716 91.6 Plus
Dmoj\GI24800-PA 754 GI24800-PA 640..699 160..219 230 63.3 Plus
Dmoj\GI24810-PA 787 GI24810-PA 413..480 154..221 209 48.5 Plus
Dmoj\GI10044-PA 514 GI10044-PA 399..466 153..220 201 54.4 Plus
Dmoj\GI23117-PA 537 GI23117-PA 437..510 151..227 201 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13135-PA 282 GL13135-PA 1..282 1..295 905 78.1 Plus
Dper\GL19887-PA 633 GL19887-PA 370..438 158..226 228 62.3 Plus
Dper\GL24224-PA 491 GL24224-PA 378..445 153..220 202 54.4 Plus
Dper\GL24020-PA 773 GL24020-PA 409..520 154..268 202 38.8 Plus
Dper\GL22041-PA 602 GL22041-PA 367..433 155..221 201 47.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22961-PA 283 GA22961-PA 1..283 1..295 914 77.4 Plus
Dpse\GA19667-PA 678 GA19667-PA 564..623 160..219 229 63.3 Plus
Dpse\GA28280-PA 636 GA28280-PA 373..441 158..226 227 62.3 Plus
Dpse\GA28287-PA 626 GA28287-PA 346..438 124..226 227 51.9 Plus
Dpse\GA15116-PA 533 GA15116-PA 433..506 151..227 206 48.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11573-PA 272 GM11573-PA 5..272 25..295 1360 97.8 Plus
Dsec\GM13506-PA 640 GM13506-PA 373..441 158..226 227 62.3 Plus
Dsec\GM11004-PA 660 GM11004-PA 546..605 160..219 226 63.3 Plus
Dsec\GM25007-PA 523 GM25007-PA 438..503 159..224 201 57.6 Plus
Dsec\GM25858-PA 729 GM25858-PA 312..461 84..221 200 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24796-PA 90 GD24796-PA 2..90 206..295 444 93.3 Plus
Dsim\GD15668-PA 547 GD15668-PA 276..368 124..226 230 49.5 Plus
Dsim\GD19974-PA 658 GD19974-PA 544..603 160..219 227 63.3 Plus
Dsim\GD15666-PA 638 GD15666-PA 371..439 158..226 227 62.3 Plus
Dsim\GD20427-PA 719 GD20427-PA 305..454 84..221 205 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16761-PA 281 GJ16761-PA 1..281 1..295 1017 74.3 Plus
Dvir\GJ18853-PA 701 GJ18853-PA 395..514 112..226 239 49.6 Plus
Dvir\GJ24446-PA 699 GJ24446-PA 585..644 160..219 230 63.3 Plus
Dvir\GJ18855-PA 547 GJ18855-PA 255..347 124..226 228 49.5 Plus
Dvir\GJ22569-PA 496 GJ22569-PA 383..450 153..220 203 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25513-PA 254 GK25513-PA 2..254 25..295 879 73.5 Plus
Dwil\GK14259-PA 686 GK14259-PA 571..631 159..219 234 63.9 Plus
Dwil\GK19952-PA 696 GK19952-PA 381..449 158..226 228 62.3 Plus
Dwil\GK19953-PA 650 GK19953-PA 371..463 124..226 225 51.9 Plus
Dwil\GK17836-PA 500 GK17836-PA 324..384 157..217 219 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17019-PA 276 GE17019-PA 5..276 25..295 981 91.5 Plus
Dyak\GE17664-PA 574 GE17664-PA 300..392 124..226 229 49.5 Plus
Dyak\GE24972-PA 667 GE24972-PA 553..612 160..219 228 63.3 Plus
Dyak\GE17661-PA 656 GE17661-PA 380..448 158..226 226 62.3 Plus
Dyak\GE23858-PA 517 GE23858-PA 417..490 151..227 203 48.1 Plus

IP01054.hyp Sequence

Translation from 361 to 1248

> IP01054.hyp
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPM*

IP01054.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 295 CG11085-PA 1..295 1..295 1527 100 Plus
B-H2-PA 645 CG5488-PA 293..501 65..283 266 37.1 Plus
B-H1-PA 544 CG5529-PA 210..424 104..289 258 35.8 Plus
B-H2-PB 303 CG5488-PB 4..159 124..283 245 42.4 Plus
slou-PA 659 CG6534-PA 523..631 122..254 244 42.9 Plus