Clone IP01169 Report

Search the DGRC for IP01169

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:11
Well:69
Vector:pOT2
Associated Gene/Transcriptdmrt99B-RA
Protein status:IP01169.pep: gold
Preliminary Size:1533
Sequenced Size:2343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15504 2005-01-01 Successful iPCR screen
dmrt99B 2008-04-29 Release 5.5 accounting
dmrt99B 2008-08-15 Release 5.9 accounting
dmrt99B 2008-12-18 5.12 accounting

Clone Sequence Records

IP01169.complete Sequence

2343 bp (2343 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022192

> IP01169.complete
TCATGTCGTTAGCGCGCGTGGATTGAATTCGAGAACTATGCGGATATAAA
TAGTTAAACAATAAAACAATCAAACTACAAGCTAACAACAAACAATTAAA
TACTAATCAAATAAGCTAAAGTGAAGTGTGTGCTCAGAAGTTTTTGACCT
AACAACTAAATCCACATCGAGGTTTCTGATCTTCACGTCGAAATGAGTCT
ACCGTCGGGTGTGGACATGCAGAATCTGATGTCCCAGCATCCGGTCTTGG
GAGCACTGCCACCTGCTTTCTTCTTGCGAGCCGCCTCGGAACGCTACCAA
AGGACGCCCAAGTGCGCCCGCTGCAGGAACCACGGAGTGGTCAGCGCCTT
GAAGGGACACAAACGCTACTGCCGCTGGCGGGATTGCGTCTGCGCCAAAT
GCACTCTAATCGCGGAACGCCAAAGGGTTATGGCTGCTCAGGTGGCCCTT
CGACGCCAACAGGCCCAAGAAGAGAACGAGGCCCGCGAGCTGGGCCTGCT
CTACACTTCGGTTCCTGGCCAGCAGAATGGCAGCGACAGTGCTACGCCCA
CTCCGCACAGCCCCAACCACAGCGGCAGCGGCGGCTCGGGCAGCGGAGGA
TCGGGCCAGAACGGCGTCTTCCACGGCGGGATTCCCTCGCCACCCAGCGA
CGGCTTCGAGGCCAGCTCCACTCCCAATCATCACCAGCAGTCGCAGCAGC
AGCAGCAGGCGCACCACCAACAGCACCTTAGCCACCCACACCAGCAGTCC
CAGCGGTTCAATGGCAATGAATCCGACACGGATGGACGCACCCGTTCCGA
GCACCTCAGCGTCGGTTTCTCGCCCACCAGAACCGAGCTGGATGAGAGTC
CTGTGTCCAAGCGCGGAGCAGCCCTGTCGAACGAGACCGACCAGGACACG
GGCTCCGAGTCCGGATCGCCGAGTAGTCCCCGGCCCAAGGTCGCCGGACT
GTTCAATCTGACCGCCAGCTTGTCGCCCGCCCGCACTGGACCGCCCAGCT
CGCCGGAATCGGATCTGGACGTGGATTCGGCGCCGGATGAGGCCACGCCG
GAGAATCTCAGTCTCAAGAAGGAGGACAGCCAGTCGCCGCCCAACACGCC
CGCCGAGAATCTTCATCTGCTGCGATCCTTCAGCAGCAGTCATGCCCAGG
GCTTCCTGCCATATCACCACACGCAGTTCCTGGCCGCCGCCGGCCTGCCC
GCCCACCACCACCCAGCGGCACACTCGCCGCACCACCAGCAGCAGCAACA
GCAGCAGCAGCAGCAGCAGAACCACCTGCCACAGCACCACCAGCAACAGC
AGCAGCAGCAGCAACAGCAGCAGAGATCGCCCATCGACGTCCTGATGAGG
GTGTTCCCCAACCGACGGCGCAGCGATGTGGAGCAGCTGATGCAGCGGTT
CCGTGGCGACGTGCTCCAGGCCATGGAGTGCATGCTGGCTGGCGAGGATT
TGGGACAGACTCCGCCGCAGGTGCCGCCATCGCCGCCCTTTCCCATGAAG
TCCGCCTTCTCCCCGCTGGTGCCGCCCTCGGTTTTCGGCTCCCCCACCCA
TCGCTACCATCCCTTCATGCAGGCGCACGCCAAGCGATTCCTGACTGCTC
CCTACGCCGGAACCGGCTACCTTCCGGGAGTGCTCAGTGCGGCGGATATC
GAGCAATCCGAGTCCAACGGAGCGGGCGGCATAGGGTTGGATCGCACCAG
CAATGCTGGCGACTCCCAGGATTGAGGCATCGAGGTGGAGGCCAGCGGCG
CATCCGTCTTCAGGCCTTTCGAATAAGGTTCCCACCCCTGCTACACTGCG
GAAAAATGTGAACACTTTACGAGTCAAGAACACAATTCTTAACTTCAATG
AGTTTTAGAGCTCTCGTTTGTTTTTATAATATTTTCAGTCAGCTGAAACC
ATAGAAGTTTTTCATTGCAGAAAGAACTTTCTTGATTTTTGAGCAACTGT
TTCTCGCAGTGCACGTCCCGCAACTAAGTGTAAATTACATTTGCCCTCGA
CTCTTAGCACAAGTATTGTAACATAGAGACCGTATAAGTAAATAATACGT
TTAATGAATTAAAACTTAAGAAAAACCATACACTCGATCCCAGTTATAAG
AAGTATTTGTTTAGCTGAAATTAACATTATGACGATGATGAGATTATTGT
GTAAGCGATTGTTGATTGCAACCAACTAATTGAGATATCCGTGTGTACCA
TATGAATATGAGCATATATATAATTATATTAAACATCATATTATGTCTTA
GATAAAGTACATTTCAAACACTGTGTTAAAGTATTTAATAAATCTACAAA
TAATTCAATAAAATAATGAAGAAATTAAAAAAAAAAAAAAAAA

IP01169.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2694 dmrt99B-RA 369..2694 1..2326 11630 100 Plus
dmrt99B.a 2694 dmrt99B.a 369..2694 1..2326 11630 100 Plus
CG42457.a 3371 CG42457.a 901..985 1229..1313 200 82.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25518157..25519630 853..2326 7145 99 Plus
chr3R 27901430 chr3R 25516027..25516441 439..853 1940 97.8 Plus
chr3R 27901430 chr3R 25515219..25515559 1..341 1675 99.4 Plus
chr3R 27901430 chr3R 25515641..25515747 339..445 535 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29695552..29697027 853..2328 7380 100 Plus
3R 32079331 3R 29693423..29693837 439..853 2075 100 Plus
3R 32079331 3R 29692615..29692955 1..341 1705 100 Plus
3R 32079331 3R 29693037..29693143 339..445 535 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29436383..29437858 853..2328 7380 100 Plus
3R 31820162 3R 29434254..29434668 439..853 2075 100 Plus
3R 31820162 3R 29433446..29433786 1..341 1705 100 Plus
3R 31820162 3R 29433868..29433974 339..445 535 100 Plus
Blast to na_te.dros performed 2019-03-15 15:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1449..1536 2214..2305 144 65.2 Plus
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 4047..4174 2192..2312 127 60.2 Plus
Tc3 1743 Tc3 TC3 1743bp 1498..1598 2316..2214 123 60.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 406..352 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 406..352 122 69.1 Minus

IP01169.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:48:57 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25515219..25515557 1..339 99 -> Plus
chr3R 25515642..25515743 340..441 100 -> Plus
chr3R 25516030..25516441 442..853 97 -> Plus
chr3R 25518158..25519630 854..2326 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:15 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:46 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:41:32 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:29 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:16:51 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:59 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:46 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 25..2350 1..2326 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:32 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 25..2350 1..2326 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:30 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 1..1533 193..1725 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:16:51 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 25..2350 1..2326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:57 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29692615..29692953 1..339 100 -> Plus
3R 29693038..29693139 340..441 100 -> Plus
3R 29693426..29693837 442..853 100 -> Plus
3R 29695553..29697025 854..2326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:57 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29692615..29692953 1..339 100 -> Plus
3R 29693038..29693139 340..441 100 -> Plus
3R 29693426..29693837 442..853 100 -> Plus
3R 29695553..29697025 854..2326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:48:57 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29692615..29692953 1..339 100 -> Plus
3R 29693038..29693139 340..441 100 -> Plus
3R 29693426..29693837 442..853 100 -> Plus
3R 29695553..29697025 854..2326 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:32 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518337..25518675 1..339 100 -> Plus
arm_3R 25518760..25518861 340..441 100 -> Plus
arm_3R 25519148..25519559 442..853 100 -> Plus
arm_3R 25521275..25522747 854..2326 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:02 Download gff for IP01169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29433446..29433784 1..339 100 -> Plus
3R 29433869..29433970 340..441 100 -> Plus
3R 29434257..29434668 442..853 100 -> Plus
3R 29436384..29437856 854..2326 100   Plus

IP01169.pep Sequence

Translation from 192 to 1724

> IP01169.pep
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQD*

IP01169.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23361-PA 510 GF23361-PA 1..510 1..510 2019 92.4 Plus
Dana\GF19405-PA 267 GF19405-PA 11..75 33..97 270 70.8 Plus
Dana\GF16494-PA 325 GF16494-PA 40..103 37..100 249 64.1 Plus
Dana\GF16562-PA 422 GF16562-PA 42..100 39..97 229 67.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11680-PA 513 GG11680-PA 1..513 1..510 2595 97.9 Plus
Dere\GG24332-PA 317 GG24332-PA 39..102 37..100 252 65.6 Plus
Dere\GG24818-PA 428 GG24818-PA 42..100 39..97 228 67.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14316-PA 518 GH14316-PA 1..518 1..510 2032 80.7 Plus
Dgri\GH17701-PA 288 GH17701-PA 20..82 34..96 266 69.8 Plus
Dgri\GH18276-PA 321 GH18276-PA 37..100 37..100 247 65.6 Plus
Dgri\GH22853-PA 614 GH22853-PA 42..97 39..94 231 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-PA 510 CG15504-PA 1..510 1..510 2718 100 Plus
dmrt11E-PA 377 CG15749-PA 115..233 34..137 275 50.4 Plus
dsx-PF 427 CG11094-PF 42..324 39..286 262 29.1 Plus
dsx-PC 427 CG11094-PC 42..324 39..286 262 29.1 Plus
dsx-PB 427 CG11094-PB 42..324 39..286 262 29.1 Plus
dsx-PD 549 CG11094-PD 42..324 39..286 262 29.1 Plus
dsx-PA 549 CG11094-PA 42..324 39..286 262 29.1 Plus
dsx-PE 572 CG11094-PE 42..324 39..286 262 29.1 Plus
dmrt93B-PA 325 CG5737-PA 1..102 1..100 243 49 Plus
fl(2)d-PA 536 CG6315-PA 22..129 299..413 164 35.5 Plus
CG14442-PD 529 CG14442-PD 21..157 327..465 162 35.6 Plus
CG14442-PB 952 CG14442-PB 21..157 327..465 162 35.6 Plus
CG14442-PE 958 CG14442-PE 21..157 327..465 162 35.6 Plus
CG14442-PC 1008 CG14442-PC 21..157 327..465 162 35.6 Plus
CG14442-PA 1034 CG14442-PA 21..157 327..465 162 35.6 Plus
Tlk-PG 1489 CG34412-PG 90..306 162..380 158 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10413-PA 511 GI10413-PA 1..511 1..510 1926 82.1 Plus
Dmoj\GI16108-PA 263 GI16108-PA 11..78 30..97 269 66.2 Plus
Dmoj\GI24085-PA 319 GI24085-PA 34..97 37..100 248 65.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13902-PA 494 GL13902-PA 1..494 1..510 1900 80.8 Plus
Dper\GL11942-PA 290 GL11942-PA 40..103 37..100 251 65.6 Plus
Dper\GL23549-PA 436 GL23549-PA 42..100 39..97 230 67.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13771-PA 506 GA13771-PA 1..506 1..510 2095 88.1 Plus
Dpse\GA13932-PA 252 GA13932-PA 10..73 34..97 270 70.3 Plus
Dpse\GA19095-PA 324 GA19095-PA 40..103 37..100 253 65.6 Plus
Dpse\GA10755-PB 557 GA10755-PB 42..103 39..100 235 64.5 Plus
Dpse\GA10755-PC 438 GA10755-PC 42..100 39..97 229 67.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12805-PA 505 GM12805-PA 1..505 1..510 2607 98.4 Plus
Dsec\GM11626-PA 164 GM11626-PA 15..78 34..97 265 71.9 Plus
Dsec\GM15062-PA 325 GM15062-PA 39..102 37..100 252 65.6 Plus
Dsec\GM10444-PA 550 GM10444-PA 42..103 39..100 232 64.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21451-PA 509 GD21451-PA 1..509 1..510 1833 87.6 Plus
Dsim\GD24419-PA 198 GD24419-PA 1..171 50..219 876 98.2 Plus
Dsim\GD19394-PA 325 GD19394-PA 33..102 31..100 252 61.4 Plus
Dsim\GD19445-PA 387 GD19445-PA 42..100 39..97 227 67.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10627-PA 504 GJ10627-PA 1..504 1..510 1928 81.7 Plus
Dvir\GJ15759-PA 279 GJ15759-PA 16..139 34..143 272 44.4 Plus
Dvir\GJ10903-PA 310 GJ10903-PA 39..102 37..100 248 65.6 Plus
Dvir\dsx-PA 575 GJ11032-PA 42..97 39..94 233 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11913-PA 523 GK11913-PA 1..523 1..510 1961 84.1 Plus
Dwil\GK17058-PA 241 GK17058-PA 17..81 34..98 268 69.2 Plus
Dwil\GK14181-PA 332 GK14181-PA 41..104 37..100 245 64.1 Plus
Dwil\GK14297-PA 190 GK14297-PA 42..95 39..92 215 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23869-PA 512 GE23869-PA 1..512 1..510 2604 98.4 Plus
Dyak\GE17070-PA 284 GE17070-PA 16..78 34..96 264 71.4 Plus
Dyak\GE11105-PA 354 GE11105-PA 42..100 39..97 228 67.8 Plus
Dyak\GE25757-PA 116 GE25757-PA 42..95 39..92 209 70.4 Plus

IP01169.hyp Sequence

Translation from 192 to 1724

> IP01169.hyp
MSLPSGVDMQNLMSQHPVLGALPPAFFLRAASERYQRTPKCARCRNHGVV
SALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL
GLLYTSVPGQQNGSDSATPTPHSPNHSGSGGSGSGGSGQNGVFHGGIPSP
PSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFNGNESDTDGRT
RSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKV
AGLFNLTASLSPARTGPPSSPESDLDVDSAPDEATPENLSLKKEDSQSPP
NTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQ
QQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLM
QRFRGDVLQAMECMLAGEDLGQTPPQVPPSPPFPMKSAFSPLVPPSVFGS
PTHRYHPFMQAHAKRFLTAPYAGTGYLPGVLSAADIEQSESNGAGGIGLD
RTSNAGDSQD*

IP01169.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-PA 510 CG15504-PA 1..510 1..510 2718 100 Plus
dmrt11E-PA 377 CG15749-PA 115..233 34..137 275 50.4 Plus
dsx-PF 427 CG11094-PF 42..324 39..286 262 29.1 Plus
dsx-PC 427 CG11094-PC 42..324 39..286 262 29.1 Plus
dsx-PB 427 CG11094-PB 42..324 39..286 262 29.1 Plus