Clone IP01220 Report

Search the DGRC for IP01220

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:12
Well:20
Vector:pOT2
Associated Gene/TranscriptCG17186-RA
Protein status:IP01220.pep: gold
Preliminary Size:1146
Sequenced Size:1433

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17186 2005-01-01 Successful iPCR screen
CG17186 2008-04-29 Release 5.5 accounting
CG17186 2008-08-15 Release 5.9 accounting
CG17186 2008-12-18 5.12 accounting

Clone Sequence Records

IP01220.complete Sequence

1433 bp (1433 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022186

> IP01220.complete
CGCAGACCAAACGAGGGAAATATGTCGCAGACATGCCAGAGAACGGAAAC
ACTGACGATTGAGGCTCTAGATTTCATCTACGAGGACGAAATGGAATACT
TGCACCTAAAACAAGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAG
ATAAAGCGACTGACTTGCAACATAAACGGCTGCACTTACTCCACGGACCG
GAGAAGAGACTTGAGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGG
AGTCCTGCTCTGACTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGC
AACGTCTGCGGCTACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAA
GGAGTCGAGGCGCCACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGA
TGGACGAGGCCGAGAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTA
GAGGAGCCAGCGCCCGCGGATGCGGAGAAAACACGATACACGGAAGACAT
CCTGACCACGTGCACGCCGTGTGACTACAGCACCACTCGAAAATCTCAAT
TCGAGATGCAAGCAAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAG
CTGGAGGCTAATGAATACATACAGTATCTGCCCCAGGAGCAGGAACAGAT
GGTGGAGCTATCTGGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCT
ACAAGAAGGAGTGCAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGA
ACGGCCAGGAGATTCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCT
GGCCAAGATTCAAGCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTG
AGCCAGTAGAATACTTGGAAGCGGAAAATGAGCTGGAGGAGATTGATCAC
AGAGAGGAGAGAAATTTTGTGGAGGAGCTTGATATGGATGTTATGGAAGA
GCCAGATGTTGTGGAGGATATACAGGATATAGATAAGCAAAACGGACTGG
AAGAGATCAATCTAGTGGAGATCGACGAGGTGGTTCAAATAGATCCCGGC
TTTGAAATGATAGAATATACAACTGCCGAAGAAAACGTTTACGAGGAGAT
CGTGTACCTGACCACCGAAGACAGTCCGGAGGATATTTCCTACTTCATCG
CGCTGGACAATGCATAGATTTGTTAATTTCTCGACTCTTTGGTACTTTTA
ATTACATCGAAAGCCAACGAATTGTTAAATTACAATCAATGCAATAACCA
AACTTTAGATATTAATGAACTGTATAAAAGTTTTTGACTCTTGATAAGCC
AAAATTCTTGAATTAAGAAATATTTTAAATGTAAAGAATTGAAAAGCTAT
GAAAAGATTGTTTATTCGTTGTTACTACGAATAAAGAATATTGATTTTGA
AATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP01220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-RA 1470 CG17186-RA 61..1470 1..1410 7035 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15699901..15701209 1406..98 6545 100 Minus
chr3R 27901430 chr3R 15701269..15701365 97..1 470 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19875970..19877282 1410..98 6565 100 Minus
3R 32079331 3R 19877342..19877438 97..1 470 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19616801..19618113 1410..98 6565 100 Minus
3R 31820162 3R 19618173..19618269 97..1 470 98.9 Minus
Blast to na_te.dros performed 2019-03-16 10:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1709..1747 1315..1353 114 76.9 Plus

IP01220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:20 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15699901..15701209 98..1406 100 <- Minus
chr3R 15701269..15701365 1..97 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:23 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1146 22..1167 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:14 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1146 22..1167 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:22 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1146 22..1167 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:56 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1146 22..1167 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:23 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1146 22..1167 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:06 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1406 1..1406 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:14 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1406 1..1406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:22 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 77..1482 1..1406 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:56 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 1..1406 1..1406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:23 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
CG17186-RA 77..1482 1..1406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19875974..19877282 98..1406 100 <- Minus
3R 19877342..19877438 1..97 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19875974..19877282 98..1406 100 <- Minus
3R 19877342..19877438 1..97 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19875974..19877282 98..1406 100 <- Minus
3R 19877342..19877438 1..97 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:22 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15701696..15703004 98..1406 100 <- Minus
arm_3R 15703064..15703160 1..97 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:31 Download gff for IP01220.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19616805..19618113 98..1406 100 <- Minus
3R 19618173..19618269 1..97 98   Minus

IP01220.hyp Sequence

Translation from 0 to 1166

> IP01220.hyp
RRPNEGNMSQTCQRTETLTIEALDFIYEDEMEYLHLKQAPRKEEQVKAVK
IKRLTCNINGCTYSTDRRRDLRRHRRSQKHMLLESCSDSESEVESSLFSC
NVCGYKTAKRYCFDRHKESRRHIMKEQEECEKLMDEAERAEPAVKRIKRV
EEPAPADAEKTRYTEDILTTCTPCDYSTTRKSQFEMQAKSQANIEVVQSQ
LEANEYIQYLPQEQEQMVELSGESGETEDEYLAYKKECRCTLECKPCEYR
TARRFCFVRHMRSARHLAKIQADLDGLEETEALEPVEYLEAENELEEIDH
REERNFVEELDMDVMEEPDVVEDIQDIDKQNGLEEINLVEIDEVVQIDPG
FEMIEYTTAEENVYEEIVYLTTEDSPEDISYFIALDNA*

IP01220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-PA 381 CG17186-PA 1..381 8..388 1987 100 Plus

IP01220.pep Sequence

Translation from 21 to 1166

> IP01220.pep
MSQTCQRTETLTIEALDFIYEDEMEYLHLKQAPRKEEQVKAVKIKRLTCN
INGCTYSTDRRRDLRRHRRSQKHMLLESCSDSESEVESSLFSCNVCGYKT
AKRYCFDRHKESRRHIMKEQEECEKLMDEAERAEPAVKRIKRVEEPAPAD
AEKTRYTEDILTTCTPCDYSTTRKSQFEMQAKSQANIEVVQSQLEANEYI
QYLPQEQEQMVELSGESGETEDEYLAYKKECRCTLECKPCEYRTARRFCF
VRHMRSARHLAKIQADLDGLEETEALEPVEYLEAENELEEIDHREERNFV
EELDMDVMEEPDVVEDIQDIDKQNGLEEINLVEIDEVVQIDPGFEMIEYT
TAEENVYEEIVYLTTEDSPEDISYFIALDNA*

IP01220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17353-PA 323 GF17353-PA 1..302 1..291 278 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15797-PA 375 GG15797-PA 1..374 1..380 1512 81.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17186-PA 381 CG17186-PA 1..381 1..381 1987 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12415-PA 327 GL12415-PA 5..326 9..380 295 29.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14373-PA 327 GA14373-PA 5..326 9..380 295 29.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26889-PA 380 GM26889-PA 1..379 1..380 1526 86.6 Plus
Dsec\GM16094-PA 324 GM16094-PA 1..299 1..301 1205 88 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20096-PA 385 GD20096-PA 1..384 1..380 1554 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22359-PA 258 GK22359-PA 11..169 8..186 251 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25108-PA 375 GE25108-PA 2..374 9..380 1411 80.7 Plus