Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP01220.complete Sequence
1433 bp (1433 high quality bases) assembled on 2005-08-25
GenBank Submission: BT022186
> IP01220.complete
CGCAGACCAAACGAGGGAAATATGTCGCAGACATGCCAGAGAACGGAAAC
ACTGACGATTGAGGCTCTAGATTTCATCTACGAGGACGAAATGGAATACT
TGCACCTAAAACAAGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAG
ATAAAGCGACTGACTTGCAACATAAACGGCTGCACTTACTCCACGGACCG
GAGAAGAGACTTGAGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGG
AGTCCTGCTCTGACTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGC
AACGTCTGCGGCTACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAA
GGAGTCGAGGCGCCACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGA
TGGACGAGGCCGAGAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTA
GAGGAGCCAGCGCCCGCGGATGCGGAGAAAACACGATACACGGAAGACAT
CCTGACCACGTGCACGCCGTGTGACTACAGCACCACTCGAAAATCTCAAT
TCGAGATGCAAGCAAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAG
CTGGAGGCTAATGAATACATACAGTATCTGCCCCAGGAGCAGGAACAGAT
GGTGGAGCTATCTGGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCT
ACAAGAAGGAGTGCAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGA
ACGGCCAGGAGATTCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCT
GGCCAAGATTCAAGCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTG
AGCCAGTAGAATACTTGGAAGCGGAAAATGAGCTGGAGGAGATTGATCAC
AGAGAGGAGAGAAATTTTGTGGAGGAGCTTGATATGGATGTTATGGAAGA
GCCAGATGTTGTGGAGGATATACAGGATATAGATAAGCAAAACGGACTGG
AAGAGATCAATCTAGTGGAGATCGACGAGGTGGTTCAAATAGATCCCGGC
TTTGAAATGATAGAATATACAACTGCCGAAGAAAACGTTTACGAGGAGAT
CGTGTACCTGACCACCGAAGACAGTCCGGAGGATATTTCCTACTTCATCG
CGCTGGACAATGCATAGATTTGTTAATTTCTCGACTCTTTGGTACTTTTA
ATTACATCGAAAGCCAACGAATTGTTAAATTACAATCAATGCAATAACCA
AACTTTAGATATTAATGAACTGTATAAAAGTTTTTGACTCTTGATAAGCC
AAAATTCTTGAATTAAGAAATATTTTAAATGTAAAGAATTGAAAAGCTAT
GAAAAGATTGTTTATTCGTTGTTACTACGAATAAAGAATATTGATTTTGA
AATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
IP01220.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-RA | 1470 | CG17186-RA | 61..1470 | 1..1410 | 7035 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 15699901..15701209 | 1406..98 | 6545 | 100 | Minus |
chr3R | 27901430 | chr3R | 15701269..15701365 | 97..1 | 470 | 99 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19875970..19877282 | 1410..98 | 6565 | 100 | Minus |
3R | 32079331 | 3R | 19877342..19877438 | 97..1 | 470 | 99 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 19616801..19618113 | 1410..98 | 6565 | 100 | Minus |
3R | 31820162 | 3R | 19618173..19618269 | 97..1 | 470 | 98.9 | Minus |
Blast to na_te.dros performed 2019-03-16 10:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1709..1747 | 1315..1353 | 114 | 76.9 | Plus |
IP01220.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:20 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 15699901..15701209 | 98..1406 | 100 | <- | Minus |
chr3R | 15701269..15701365 | 1..97 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:23 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1146 | 22..1167 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:14 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1146 | 22..1167 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:22 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1146 | 22..1167 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:56 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1146 | 22..1167 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:23 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1146 | 22..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:06 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1406 | 1..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:14 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1406 | 1..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:22 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 77..1482 | 1..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:56 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 1..1406 | 1..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:23 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17186-RA | 77..1482 | 1..1406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19875974..19877282 | 98..1406 | 100 | <- | Minus |
3R | 19877342..19877438 | 1..97 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19875974..19877282 | 98..1406 | 100 | <- | Minus |
3R | 19877342..19877438 | 1..97 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:20 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19875974..19877282 | 98..1406 | 100 | <- | Minus |
3R | 19877342..19877438 | 1..97 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:22 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15701696..15703004 | 98..1406 | 100 | <- | Minus |
arm_3R | 15703064..15703160 | 1..97 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:31 Download gff for
IP01220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19616805..19618113 | 98..1406 | 100 | <- | Minus |
3R | 19618173..19618269 | 1..97 | 98 | | Minus |
IP01220.hyp Sequence
Translation from 0 to 1166
> IP01220.hyp
RRPNEGNMSQTCQRTETLTIEALDFIYEDEMEYLHLKQAPRKEEQVKAVK
IKRLTCNINGCTYSTDRRRDLRRHRRSQKHMLLESCSDSESEVESSLFSC
NVCGYKTAKRYCFDRHKESRRHIMKEQEECEKLMDEAERAEPAVKRIKRV
EEPAPADAEKTRYTEDILTTCTPCDYSTTRKSQFEMQAKSQANIEVVQSQ
LEANEYIQYLPQEQEQMVELSGESGETEDEYLAYKKECRCTLECKPCEYR
TARRFCFVRHMRSARHLAKIQADLDGLEETEALEPVEYLEAENELEEIDH
REERNFVEELDMDVMEEPDVVEDIQDIDKQNGLEEINLVEIDEVVQIDPG
FEMIEYTTAEENVYEEIVYLTTEDSPEDISYFIALDNA*
IP01220.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-PA | 381 | CG17186-PA | 1..381 | 8..388 | 1987 | 100 | Plus |
IP01220.pep Sequence
Translation from 21 to 1166
> IP01220.pep
MSQTCQRTETLTIEALDFIYEDEMEYLHLKQAPRKEEQVKAVKIKRLTCN
INGCTYSTDRRRDLRRHRRSQKHMLLESCSDSESEVESSLFSCNVCGYKT
AKRYCFDRHKESRRHIMKEQEECEKLMDEAERAEPAVKRIKRVEEPAPAD
AEKTRYTEDILTTCTPCDYSTTRKSQFEMQAKSQANIEVVQSQLEANEYI
QYLPQEQEQMVELSGESGETEDEYLAYKKECRCTLECKPCEYRTARRFCF
VRHMRSARHLAKIQADLDGLEETEALEPVEYLEAENELEEIDHREERNFV
EELDMDVMEEPDVVEDIQDIDKQNGLEEINLVEIDEVVQIDPGFEMIEYT
TAEENVYEEIVYLTTEDSPEDISYFIALDNA*
IP01220.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF17353-PA | 323 | GF17353-PA | 1..302 | 1..291 | 278 | 31.7 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15797-PA | 375 | GG15797-PA | 1..374 | 1..380 | 1512 | 81.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17186-PA | 381 | CG17186-PA | 1..381 | 1..381 | 1987 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12415-PA | 327 | GL12415-PA | 5..326 | 9..380 | 295 | 29.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA14373-PA | 327 | GA14373-PA | 5..326 | 9..380 | 295 | 29.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26889-PA | 380 | GM26889-PA | 1..379 | 1..380 | 1526 | 86.6 | Plus |
Dsec\GM16094-PA | 324 | GM16094-PA | 1..299 | 1..301 | 1205 | 88 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20096-PA | 385 | GD20096-PA | 1..384 | 1..380 | 1554 | 86.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK22359-PA | 258 | GK22359-PA | 11..169 | 8..186 | 251 | 35.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25108-PA | 375 | GE25108-PA | 2..374 | 9..380 | 1411 | 80.7 | Plus |