Clone IP01230 Report

Search the DGRC for IP01230

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:12
Well:30
Vector:pOT2
Associated Gene/TranscriptCG17197-RB
Protein status:IP01230.pep: gold
Preliminary Size:951
Sequenced Size:1656

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17197 2005-01-01 Successful iPCR screen
CG17197 2008-04-29 Release 5.5 accounting
CG17197 2008-08-15 Release 5.9 accounting
CG17197 2008-12-18 5.12 accounting

Clone Sequence Records

IP01230.complete Sequence

1656 bp (1656 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022181

> IP01230.complete
AGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACGTAATGCTTA
ACTCGTCAACATCAAATCAGAAAACACAAGCTTACACTCTGAATTATATA
TAATTTTAAAATCGGAAAATTATGTGTTTGATATGGGCCTGCACCAAGTA
CTTGGCGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCG
CAGTACTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATG
TTTTACGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCT
CGGCTGGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGC
TTGCGTGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGG
CAAATTCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTG
TGAAAAACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCT
GCATTCTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGA
CACAATAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGG
AACTGGTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTA
GCTATTCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCA
TTTTGGCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCC
TGTATCTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTT
TGCATAAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTC
AAGCTGATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGT
TAAGAGTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTC
AGCATCATTCACCAAAATTACAGTTTCTCCGTGTATCCGATTGATGAAAA
TTTCTCATGTATTTGTACAGCTTCGGGGCATCATGCAATCACAAGTTCAA
ATGCAGACCATCAACATCCCAAGACGCGTGGGGGCCATCAAATCCTGGAC
AGATATCATGGGAGTATCCATAAATGTCTGCATAATCTTGTTTTTCTACT
TCTTCGAAGCTTTCTACGTAATGCCACAGTTTTTGGGATTGTTTGGACAG
GCGGTTCATTTTTTAGTCACCACTTGGATTGTCTACAATATTCTGGAAAA
CTTAAGGCTGTGCGTCACGACGTTGAACACTGTGGACTCTTTGCCGCCGC
AAATGCAGCAGCCAATGAAAGGTGAAGAGCACCTGTGGCATTTTTGCAAA
ATATGCCAAAGGAATGTACCGCCAAGGTCCTGGCACTGCAACATCTGTGA
TGCGTGCATTCTGAAACGCGATCACCACTGCAATTTTGTGGGCAACTGCG
TGGGACACAATAATCAGCGATATTTCATATGGTTCTCATTTTACGCGGCC
ATCGGTAGCGCAGTGGCCTTATTTGATAACTTCATGTTGGCCCATAAGCA
CGGTGTTGGATTTTTTGATTTAGTCAAAGCCAATTACATTATTTTTAATG
CTTACATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

IP01230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1575 CG17197-RB 1..1575 34..1608 7875 100 Plus
CG17198-RA 1066 CG17198-RA 20..685 945..1610 3330 100 Plus
CG17196-RB 844 CG17196-RB 184..375 386..577 465 82.8 Plus
CG17196-RB 844 CG17196-RB 763..844 34..115 410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21597440..21598351 945..34 4440 99.1 Minus
chr3R 27901430 chr3R 21596699..21597362 1608..945 3290 99.7 Minus
chr3R 27901430 chr3R 21598739..21598930 577..386 465 82.8 Minus
chr3R 27901430 chr3R 21599709..21599998 582..293 250 72.4 Minus
chr3R 27901430 chr3R 21600715..21600817 564..462 230 81.6 Minus
chr3L 24539361 chr3L 16850650..16850739 470..559 210 82.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:30:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775369 945..34 4560 100 Minus
3R 32079331 3R 25773715..25774380 1610..945 3330 100 Minus
3R 32079331 3R 25775757..25775948 577..386 465 82.8 Minus
3R 32079331 3R 25776727..25776842 582..467 220 79.3 Minus
3R 32079331 3R 25777733..25777835 564..462 215 80.6 Minus
3L 28110227 3L 16861157..16861246 470..559 210 82.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25515289..25516200 945..34 4560 100 Minus
3R 31820162 3R 25514546..25515211 1610..945 3330 100 Minus
3R 31820162 3R 25516588..25516779 577..386 465 82.8 Minus
3R 31820162 3R 25517558..25517673 582..467 220 79.3 Minus
3R 31820162 3R 25518564..25518666 564..462 215 80.5 Minus
3L 28103327 3L 16854257..16854346 470..559 210 82.2 Plus
3R 31820162 3R 25517552..25517640 1493..1405 145 77.5 Minus
Blast to na_te.dros performed 2019-03-16 06:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 9233..9296 47..111 124 69.7 Plus
TAHRE 10463 TAHRE OSV 10463bp 8918..8970 58..111 114 70.4 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 5706..5768 64..124 112 66.7 Plus

IP01230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:10:05 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21597440..21598355 34..945 96 <- Minus
chr3R 21596699..21597361 946..1608 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:27 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 122..994 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:53:18 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 122..994 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:19 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 122..994 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:00 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 122..994 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:29 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 122..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:28:11 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..1575 34..1608 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:53:18 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..1575 34..1608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:19 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..1575 34..1608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:00 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..1575 34..1608 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:29 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 1..1575 34..1608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:05 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25773717..25774379 946..1608 100 <- Minus
3R 25774458..25775368 35..945 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:05 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25773717..25774379 946..1608 100 <- Minus
3R 25774458..25775368 35..945 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:05 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25773717..25774379 946..1608 100 <- Minus
3R 25774458..25775368 35..945 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:19 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21599439..21600101 946..1608 100 <- Minus
arm_3R 21600180..21601090 35..945 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:35 Download gff for IP01230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25514548..25515210 946..1608 100 <- Minus
3R 25515289..25516199 35..945 100 <- Minus

IP01230.hyp Sequence

Translation from 121 to 993

> IP01230.hyp
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSD*

IP01230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PB 290 CG17197-PB 1..290 1..290 1588 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..275 744 48.9 Plus
CG13029-PC 288 CG13029-PC 1..283 1..275 740 46.6 Plus
CG17195-PA 283 CG17195-PA 1..281 1..275 722 46.6 Plus
CG17196-PC 253 CG17196-PC 20..251 43..275 658 50.4 Plus

IP01230.pep Sequence

Translation from 121 to 993

> IP01230.pep
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSD*

IP01230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19937-PA 305 GF19937-PA 1..284 1..275 695 44.2 Plus
Dana\GF23939-PA 259 GF23939-PA 1..247 43..272 560 45.2 Plus
Dana\GF23940-PA 185 GF23940-PA 1..168 1..168 533 53 Plus
Dana\GF24551-PA 209 GF24551-PA 3..209 63..279 529 41.9 Plus
Dana\GF18232-PA 295 GF18232-PA 13..287 12..274 528 40.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12221-PA 281 GG12221-PA 1..275 1..275 1179 78.2 Plus
Dere\GG12220-PA 278 GG12220-PA 1..276 1..275 727 50.7 Plus
Dere\GG13586-PA 288 GG13586-PA 1..285 1..277 726 46.5 Plus
Dere\GG12218-PA 283 GG12218-PA 1..281 1..275 686 45.6 Plus
Dere\GG12217-PA 302 GG12217-PA 13..301 6..276 548 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25236-PA 308 GH25236-PA 25..297 20..272 466 36.6 Plus
Dgri\GH23419-PA 308 GH23419-PA 25..297 20..272 464 37 Plus
Dgri\GH21619-PA 280 GH21619-PA 26..273 29..271 379 37 Plus
Dgri\GH20531-PA 286 GH20531-PA 3..281 12..281 378 32.9 Plus
Dgri\GH20532-PA 279 GH20532-PA 15..271 28..272 346 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PB 290 CG17197-PB 1..290 1..290 1588 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..275 744 48.9 Plus
CG13029-PC 288 CG13029-PC 1..283 1..275 740 46.6 Plus
CG17195-PA 283 CG17195-PA 1..281 1..275 722 46.6 Plus
CG17196-PC 253 CG17196-PC 20..251 43..275 658 50.4 Plus
CG17196-PB 251 CG17196-PB 1..249 1..275 638 44.2 Plus
CG17198-PB 299 CG17198-PB 49..297 36..275 546 41 Plus
CG17198-PA 299 CG17198-PA 49..297 36..275 546 41 Plus
CG4956-PA 302 CG4956-PA 42..296 24..271 542 42 Plus
CG4676-PA 284 CG4676-PA 26..274 29..272 425 36.7 Plus
CG10344-PB 278 CG10344-PB 15..272 28..273 379 32.1 Plus
CG10344-PA 198 CG10344-PA 15..156 28..170 309 39 Plus
CG18810-PA 300 CG18810-PA 21..278 29..268 305 29.6 Plus
Dnz1-PA 276 CG6627-PA 28..156 28..159 177 30.3 Plus
CG5196-PB 395 CG5196-PB 19..115 65..161 159 34 Plus
CG5196-PA 427 CG5196-PA 51..147 65..161 159 34 Plus
CG13029-PD 132 CG13029-PD 1..127 157..275 158 30.7 Plus
CG8314-PA 293 CG8314-PA 116..174 100..158 151 42.4 Plus
CG5880-PA 381 CG5880-PA 139..192 107..160 150 46.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10345-PA 308 GI10345-PA 11..298 3..273 522 39.7 Plus
Dmoj\GI20071-PA 241 GI20071-PA 1..234 47..271 366 38.2 Plus
Dmoj\GI18977-PA 282 GI18977-PA 4..272 13..272 364 32.1 Plus
Dmoj\GI18978-PA 275 GI18978-PA 30..263 40..274 330 34.6 Plus
Dmoj\GI18972-PA 271 GI18972-PA 24..266 46..287 298 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22296-PA 270 GL22296-PA 1..270 1..257 425 38 Plus
Dper\GL11193-PA 250 GL11193-PA 1..240 43..272 375 35.7 Plus
Dper\GL16922-PA 285 GL16922-PA 15..275 28..272 340 31 Plus
Dper\GL19029-PA 275 GL19029-PA 28..155 28..159 161 29.5 Plus
Dper\GL27308-PA 426 GL27308-PA 51..147 65..161 160 36.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18553-PB 302 GA18553-PB 13..298 1..275 539 39.7 Plus
Dpse\GA18348-PA 250 GA18348-PA 1..240 43..272 375 35.7 Plus
Dpse\GA10260-PA 285 GA10260-PA 4..275 13..272 337 30.4 Plus
Dpse\GA10260-PB 256 GA10260-PB 4..164 13..170 307 36.4 Plus
Dpse\GA19735-PA 275 GA19735-PA 28..155 28..159 161 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10221-PA 288 GM10221-PA 1..288 1..290 1322 89 Plus
Dsec\GM25666-PA 288 GM25666-PA 1..282 1..274 725 48.6 Plus
Dsec\GM10220-PA 276 GM10220-PA 1..274 1..275 709 49.5 Plus
Dsec\GM10219-PA 283 GM10219-PA 1..281 1..275 699 46.6 Plus
Dsec\GM10218-PA 302 GM10218-PA 42..301 24..276 535 41.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14673-PA 288 GD14673-PA 1..284 1..276 737 48.6 Plus
Dsim\GD18171-PA 276 GD18171-PA 1..274 1..275 702 49.5 Plus
Dsim\GD18170-PA 283 GD18170-PA 1..281 1..275 693 46.3 Plus
Dsim\GD18172-PA 300 GD18172-PA 50..299 36..276 558 42.5 Plus
Dsim\GD18169-PA 302 GD18169-PA 42..301 24..276 526 40.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10196-PA 321 GJ10196-PA 17..319 1..282 540 37.2 Plus
Dvir\GJ21165-PA 248 GJ21165-PA 1..242 40..272 408 36.1 Plus
Dvir\GJ19937-PA 287 GJ19937-PA 4..278 13..277 369 33.2 Plus
Dvir\GJ21996-PA 269 GJ21996-PA 4..265 13..277 330 31.7 Plus
Dvir\GJ19938-PA 213 GJ19938-PA 1..202 72..268 276 30 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18990-PA 278 GK18990-PA 9..275 20..275 497 36.3 Plus
Dwil\GK18989-PA 273 GK18989-PA 11..267 27..271 495 38.6 Plus
Dwil\GK20822-PA 269 GK20822-PA 30..267 40..274 339 31.8 Plus
Dwil\GK14088-PA 279 GK14088-PA 23..278 27..275 327 32.6 Plus
Dwil\GK18372-PA 275 GK18372-PA 31..209 31..217 158 26.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10668-PA 276 GE10668-PA 1..270 1..275 1158 77.5 Plus
Dyak\GE19883-PA 288 GE19883-PA 1..282 1..274 741 48.9 Plus
Dyak\GE10667-PA 276 GE10667-PA 1..274 1..275 705 47.5 Plus
Dyak\GE10666-PA 283 GE10666-PA 1..283 1..277 690 46 Plus
Dyak\GE10669-PA 300 GE10669-PA 41..299 27..276 552 41.4 Plus