Clone IP01307 Report

Search the DGRC for IP01307

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:13
Well:7
Vector:pOT2
Associated Gene/TranscriptHLH4C-RA
Protein status:IP01307.pep: gold
Preliminary Size:1424
Sequenced Size:1456

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3052 2005-01-01 Successful iPCR screen
HLH4C 2008-04-29 Release 5.5 accounting
HLH4C 2008-08-15 Release 5.9 accounting
HLH4C 2008-12-18 5.12 accounting

Clone Sequence Records

IP01307.complete Sequence

1456 bp (1456 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022167

> IP01307.complete
ACCGACTCTAGTGGCAAGCAAGGATATCTGCCAGACAACTCAAGGATCTA
GAATAACTCTGCACCTGTGATAACTGCTCATTCAGCAGCAGGCTGGGCAG
CGCAAGAAAGTCCAGTGTCCAGCGCTGGACACTGGACTTTCTTGCACCAC
TGATTTCGGTACCGAAATCAGTGGTGCAAATAGCCAGAGAATGGTCTACG
ATATGAGCCATATGGCGGCGGGTCCGCCGCAAAGCATTTCGCTTAGTCGC
TACTATCTGGTCGACGATGATGAGATGATTGGGCCAAATAATCCGCATCT
GGTCAACGAGGACTATGCGGCCAGTACGACGCTGGATATCGATAAGCGTT
TTCAGGCGCGAATGGCGTGCGAAACGGCCGCACAACCGGCACCGCCACCG
CCGCCCACGCCGGCGCCACGTCGCCGGACCACGCCCATTGCCCATTTGGA
TCCATCGGAATTGGTGGGTCTATCGCGGGAGGAGCGGCGTCGTCGCAGGC
GAGCGACACTCAAATACCGAACGGCACATGCGACGCGGGAGCGTATACGG
GTGGAGGCATTCAATGTTTCCTTTGCCGAGCTGCGCAAGCTGTTGCCCAC
ATTGCCGCCGGACAAGAAGCTTTCCAAGATCGAGATCCTCAAGCTGGCCA
TCTGCTACATTGCCTATTTGAATCATGTGCTGGAGACGCCCTGAGATAGC
GCCGGCGCCTCCAGTTTCGCCACCAGCTGCCTCTTTAACGAGGCCAATTT
TTTCGCCCCCCCGTAGGAGGTGGGGGGGCGTGGCGGGCGGATTTAGGGGG
AAAACATTGCGAATATTCCACATCCGATAAACGCATTTCACCATGCTCTG
TAATCCGCACATCGCTCCATTGGATACTTTGCCGGTGGCGGCTATGGATA
ATGCGATTATCGAATTAGCCATCTCACCAACTTAACCGAAGTGTTCGATG
GATTTTGCCGATTTGCTAACCTATTTAACCTATGGTTAAATACATACATT
TTTTTGTTTTTTGTTTTTTTTTTTCCTTGCCACTGTTGAAAGACAAATGC
CCGTCGTTTCGTTTCGATTCGTTTTTTTTTTTAGGCTTAGGTTTGTTTTC
GTAGAAACAATTGTAAAGCCACGATTTAACCTAAGGTTAAAATATGCCCG
TACTAAATGTAGAAGATATAAGCTATTAGTTTGTGTAATTTAATTGAAAA
GTAGAAATATCGAAGGAAATAACAAAACTAAATATGCCAGTAGTACATAC
AATTAAATTTATGGGAAAGCAGTGCTTAATCCTCGGAGTAAACCTTGATC
ATGGTTTATATAATATAAATAACCAAGAAAAAAAAAACAGAACCTTAAAC
TAAGATCCATTTTTTGTCTAGCCTTTAAGTCGTGATATTTGTTTATACTC
AAACGATTAATATATACAGCATTGTAATCGCAATAAAAAAAAAAAAAAAA
AAAAAA

IP01307.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-RA 1572 HLH4C-RA 293..1572 161..1440 6400 100 Plus
HLH4C-RA 1572 HLH4C-RA 170..292 1..123 615 100 Plus
HLH3B-RA 1588 HLH3B-RA 706..775 570..639 230 88.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4537897..4539170 1434..161 6250 99.4 Minus
chrX 22417052 chrX 4540099..4540176 78..1 390 100 Minus
chrX 22417052 chrX 2574758..2574827 639..570 230 88.6 Minus
chrX 22417052 chrX 4539171..4539215 123..79 225 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:31:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4645118..4646397 1440..161 6400 100 Minus
X 23542271 X 4647307..4647384 78..1 390 100 Minus
X 23542271 X 2680942..2681011 639..570 230 88.6 Minus
X 23542271 X 4646398..4646442 123..79 225 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4653216..4654495 1440..161 6400 100 Minus
X 23527363 X 4655405..4655482 78..1 390 100 Minus
X 23527363 X 2689040..2689109 639..570 230 88.5 Minus
X 23527363 X 4654496..4654540 123..79 225 100 Minus
Blast to na_te.dros performed 2019-03-15 19:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 608..659 969..1019 131 75 Plus

IP01307.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4537897..4539170 161..1434 99 == Minus
chrX 4539171..4539215 79..123 100 <- Minus
chrX 4540099..4540176 1..78 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:14:45 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 1..504 191..694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:53 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 1..504 191..694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:39 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RB 1..576 191..766 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 1..504 191..694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:38 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RB 1..576 191..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:27:33 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 31..153 1..123 100 == Plus
HLH4C-RA 154..1424 161..1431 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:53 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 31..153 1..123 100 == Plus
HLH4C-RA 154..1424 161..1431 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:39 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 31..153 1..123 100 == Plus
HLH4C-RA 154..1424 161..1431 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 31..153 1..123 100 == Plus
HLH4C-RA 154..1424 161..1431 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:38 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 31..153 1..123 100 == Plus
HLH4C-RA 154..1424 161..1431 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
X 4645124..4646397 161..1434 100 == Minus
X 4646398..4646442 79..123 100 <- Minus
X 4647307..4647384 1..78 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
X 4645124..4646397 161..1434 100 == Minus
X 4646398..4646442 79..123 100 <- Minus
X 4647307..4647384 1..78 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:34 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
X 4645124..4646397 161..1434 100 == Minus
X 4646398..4646442 79..123 100 <- Minus
X 4647307..4647384 1..78 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:39 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4539157..4540430 161..1434 100 == Minus
arm_X 4540431..4540475 79..123 100 <- Minus
arm_X 4541340..4541417 1..78 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:09 Download gff for IP01307.complete
Subject Subject Range Query Range Percent Splice Strand
X 4653222..4654495 161..1434 100 == Minus
X 4654496..4654540 79..123 100 <- Minus
X 4655405..4655482 1..78 100   Minus

IP01307.hyp Sequence

Translation from 153 to 656

> IP01307.hyp
MVYDMSHMAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDI
DKRFQARMACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERR
RRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEIL
KLAICYIAYLNHVLETP*

IP01307.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-PA 167 CG3052-PA 1..167 1..167 868 100 Plus
HLH4C-PB 191 CG3052-PB 1..167 1..167 868 100 Plus
Fer3-PA 195 CG6913-PA 24..142 65..164 142 35.3 Plus

IP01307.pep Sequence

Translation from 190 to 693

> IP01307.pep
MVYDMSHMAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDI
DKRFQARMACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERR
RRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEIL
KLAICYIAYLNHVLETP*

IP01307.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20856-PA 168 GF20856-PA 1..168 1..167 655 94.6 Plus
Dana\GF21374-PA 375 GF21374-PA 178..228 115..165 156 62.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18528-PA 167 GG18528-PA 1..167 1..167 859 98.2 Plus
Dere\GG18617-PA 372 GG18617-PA 168..218 115..165 157 62.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17630-PA 178 GH17630-PA 1..178 1..167 576 82.1 Plus
Dgri\GH24106-PA 385 GH24106-PA 175..225 115..165 154 62.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-PA 167 CG3052-PA 1..167 1..167 868 100 Plus
HLH4C-PB 191 CG3052-PB 1..167 1..167 868 100 Plus
Fer3-PA 195 CG6913-PA 24..142 65..164 142 35.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16068-PA 178 GI16068-PA 1..178 1..167 591 79.8 Plus
Dmoj\GI14376-PA 380 GI14376-PA 164..214 115..165 156 62.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14555-PA 168 GL14555-PA 1..168 1..167 630 92.3 Plus
Dper\GL26737-PA 415 GL26737-PA 169..219 115..165 149 60.8 Plus
Dper\GL18976-PA 173 GL18976-PA 55..114 106..165 142 48.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15893-PA 168 GA15893-PA 1..168 1..167 629 92.3 Plus
Dpse\GA15411-PA 361 GA15411-PA 168..218 115..165 153 60.8 Plus
Dpse\GA14815-PA 173 GA14815-PA 55..114 106..165 142 48.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12676-PA 167 GM12676-PA 1..167 1..167 857 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16284-PA 267 GD16284-PA 101..267 1..167 876 98.8 Plus
Dsim\GD24607-PA 375 GD24607-PA 172..222 115..165 157 62.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15714-PA 175 GJ15714-PA 1..175 1..167 582 84.6 Plus
Dvir\GJ19415-PA 390 GJ19415-PA 181..231 115..165 156 62.7 Plus
Dvir\GJ17522-PA 133 GJ17522-PA 19..78 106..165 137 48.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16457-PA 168 GK16457-PA 1..168 1..167 592 85.1 Plus
Dwil\GK10268-PA 353 GK10268-PA 180..230 115..165 154 60.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16844-PA 167 GE16844-PA 1..167 1..167 859 98.2 Plus
Dyak\GE16932-PA 388 GE16932-PA 182..232 115..165 157 62.7 Plus