Clone IP01401 Report

Search the DGRC for IP01401

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:14
Well:1
Vector:pOT2
Associated Gene/TranscriptCdk7-RA
Protein status:IP01401.pep: gold
Preliminary Size:1392
Sequenced Size:1457

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3319 2005-01-01 Successful iPCR screen
Cdk7 2008-04-29 Release 5.5 accounting
Cdk7 2008-08-15 Release 5.9 accounting
Cdk7 2008-12-18 5.12 accounting

Clone Sequence Records

IP01401.complete Sequence

1457 bp (1457 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022155

> IP01401.complete
AGCATTTCAGTCATTTTCGTGCTATTTATGAGGCTCTAAACGATGCTGCC
CAATGCGAATGACAAAACGGAACGCTATGCCAAGCTATCCTTCCTCGGCG
AGGGTCAGTTTGCCACAGTTTACAAGGCGCGCGACACGGTGACCAACCAA
ATTGTGGCCGTAAAGAAGATCAAGAAGGGATCGCGCGAGGATGCACGCGA
CGGTATCAACAGGACAGCGCTGCGTGAGATCAAGATATTGCAGGAGCTGC
AGCACGAGAATATCATTGGCTTGGTGGACGTTTTCGGTCAACTTTCGAAT
GTCTCGCTGGTTTTCGACTTCATGGACACGGATCTGGAGGTGATCATCAA
GGATAACAAGATTATATTAACGCAGGCGAACATCAAGGCCTATGCCATCA
TGACGCTAAAGGGTCTGGAGTATTTGCATCTCAATTGGATACTGCACCGC
GATTTGAAGCCCAACAATTTGCTGGTCAACAGCGATGGCATCCTAAAGAT
TGGCGATTTCGGTTTGGCCAAGTCCTTCGGTTCGCCCAATCGCATTTACA
CGCACCACGTGGTCACACGCTGGTATCGTTCGCCCGAATTGCTCTTTGGC
GCCCGACAATATGGCACCGGTGTGGATATGTGGGCAGTTGGCTGCATTTT
GGCTGAACTTATGCTGCGAGTGCCGTTCATGCCGGGCGATTCGGATCTGG
ATCAGCTGACACGGATCTTTTCCACACTGGGAACACCCACGGAAGCTGAA
TGGCCGCATTTGAGCAAACTGCACGACTATCTGCAGTTTCGCAACTTTCC
GGGCACACCATTGGACAATATATTCACCGCCGCGGGCAATGACTTGATCC
ATCTGATGCAACGCCTGTTTGCCATGAATCCGCTGCGGCGTGTGTCCTGC
CGCGAGGCACTGAGCATGCCGTATTTCGCTAACAAACCGGCGCCCACAGT
GGGTCCCAAGTTGCCAATGCCGTCGGCCATTCTGGCCGCCAAGGAGGGTG
CCAATCCGCAGACCGGCGACACGAAGCCTGCGCTCAAGCGCAAGCTGGTC
GAGACTACGGTGAGGGGCAATGGATTGGCCCAGAAGAAGCGGCTGCAGTT
CTAGCACACACACACACACACACACACACACCCACACACACTCACTCAGT
TAACACACACTTTCCATTATAACATTGATGTTTGTGATCGCGTTACGTTG
TTCACCGCAGACATGCACAATAAGTTCTATTGAAAGGCTTAAGGATGCAT
TGCATCCACTCCAAAAGCTCCACTCCATTCTAATTGATATGAATTTTTCT
CGCTTGGCAAAACCTTTTCGCCACCCAACATGAGTTGTTAAGACTATGCT
TAAGATGATTGAGGATGATCTATTAAAGATGTGATTGAAAGCGAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

IP01401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-RA 1507 Cdk7-RA 67..1468 1..1395 6840 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5200011..5201306 1395..106 6355 99.5 Minus
chrX 22417052 chrX 5201375..5201483 108..1 495 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:31:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5307465..5308760 1395..106 6340 99.5 Minus
X 23542271 X 5308829..5308937 108..1 495 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5315563..5316858 1395..106 6350 99.4 Minus
X 23527363 X 5316927..5317035 108..1 505 99 Minus
Blast to na_te.dros performed on 2019-03-16 03:10:04 has no hits.

IP01401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:10:55 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5200011..5201303 109..1395 96 <- Minus
chrX 5201375..5201483 1..108 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:01 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 43..1104 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:45 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 43..1104 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:24 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 43..1104 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:28 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 43..1104 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:03 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 43..1104 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:27:24 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1392 10..1394 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:45 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1402 1..1395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:24 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 47..1448 1..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:28 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1392 10..1394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:03 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 47..1448 1..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:55 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
X 5307465..5308757 109..1395 99 <- Minus
X 5308829..5308937 1..108 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:55 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
X 5307465..5308757 109..1395 99 <- Minus
X 5308829..5308937 1..108 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:55 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
X 5307465..5308757 109..1395 99 <- Minus
X 5308829..5308937 1..108 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:24 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5201498..5202790 109..1395 99 <- Minus
arm_X 5202862..5202970 1..108 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:12:02 Download gff for IP01401.complete
Subject Subject Range Query Range Percent Splice Strand
X 5315563..5316855 109..1395 99 <- Minus
X 5316927..5317035 1..108 99   Minus

IP01401.pep Sequence

Translation from 42 to 1103

> IP01401.pep
MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIKKGSRED
ARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEV
IIKDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGI
LKIGDFGLAKSFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVG
CILAELMLRVPFMPGDSDLDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFR
NFPGTPLDNIFTAAGNDLIHLMQRLFAMNPLRRVSCREALSMPYFANKPA
PTVGPKLPMPSAILAAKEGANPQTGDTKPALKRKLVETTVRGNGLAQKKR
LQF*

IP01401.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20951-PA 352 GF20951-PA 1..352 1..353 1724 91.2 Plus
Dana\GF13982-PA 279 GF13982-PA 1..251 1..303 1144 73.6 Plus
Dana\GF16690-PA 314 GF16690-PA 14..289 18..297 617 42.2 Plus
Dana\GF22626-PA 294 GF22626-PA 2..288 10..297 606 41.3 Plus
Dana\GF14103-PA 297 GF14103-PA 2..287 10..295 601 40.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18504-PA 353 GG18504-PA 1..353 1..353 1832 96.6 Plus
Dere\GG23938-PA 297 GG23938-PA 2..287 10..295 613 40.8 Plus
Dere\GG22344-PA 294 GG22344-PA 2..291 10..300 608 40.9 Plus
Dere\GG24088-PA 314 GG24088-PA 6..289 10..297 597 41.2 Plus
Dere\GG17482-PA 295 GG17482-PA 8..294 11..295 544 39.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24366-PA 353 GH24366-PA 1..350 1..349 1670 88.9 Plus
Dgri\GH13856-PA 298 GH13856-PA 2..287 10..295 612 41.4 Plus
Dgri\GH17244-PA 314 GH17244-PA 6..289 10..297 605 42.2 Plus
Dgri\GH20285-PA 294 GH20285-PA 2..291 10..300 603 40.9 Plus
Dgri\GH19966-PA 388 GH19966-PA 55..346 12..302 575 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-PA 353 CG3319-PA 1..353 1..353 1831 100 Plus
Cdk2-PC 314 CG10498-PC 6..289 10..297 605 41.2 Plus
Cdk2-PB 314 CG10498-PB 6..289 10..297 605 41.2 Plus
Cdk2-PA 314 CG10498-PA 6..289 10..297 605 41.2 Plus
Cdk1-PA 297 CG5363-PA 2..287 10..295 592 40.5 Plus
Cdk5-PA 294 CG8203-PA 2..288 10..297 589 41 Plus
Cdc2rk-PA 387 CG1362-PA 53..353 12..308 565 39.7 Plus
Pitslre-PG 778 CG4268-PG 382..706 10..321 545 37.5 Plus
Pitslre-PF 778 CG4268-PF 382..706 10..321 545 37.5 Plus
Pitslre-PE 778 CG4268-PE 382..706 10..321 545 37.5 Plus
Pitslre-PC 952 CG4268-PC 556..880 10..321 545 37.5 Plus
Pitslre-PA 952 CG4268-PA 556..880 10..321 545 37.5 Plus
Eip63E-PH 501 CG10579-PH 180..472 8..299 542 38.9 Plus
Eip63E-PM 509 CG10579-PM 188..480 8..299 542 38.9 Plus
Eip63E-PC 509 CG10579-PC 188..480 8..299 542 38.9 Plus
Eip63E-PB 509 CG10579-PB 188..480 8..299 542 38.9 Plus
Eip63E-PA 509 CG10579-PA 188..480 8..299 542 38.9 Plus
Eip63E-PJ 509 CG10579-PJ 188..480 8..299 542 38.9 Plus
Eip63E-PF 509 CG10579-PF 188..480 8..299 542 38.9 Plus
Eip63E-PL 522 CG10579-PL 201..493 8..299 542 38.9 Plus
Eip63E-PE 522 CG10579-PE 201..493 8..299 542 38.9 Plus
Eip63E-PD 522 CG10579-PD 201..493 8..299 542 38.9 Plus
Eip63E-PK 522 CG10579-PK 201..493 8..299 542 38.9 Plus
Eip63E-PI 522 CG10579-PI 201..493 8..299 542 38.9 Plus
Eip63E-PG 522 CG10579-PG 201..493 8..299 542 38.9 Plus
Eip63E-PN 538 CG10579-PN 201..493 8..299 542 38.9 Plus
CG6800-PA 302 CG6800-PA 8..287 11..288 523 39.2 Plus
Cdk9-PA 404 CG5179-PA 45..354 7..302 503 37.9 Plus
CG42366-PB 703 CG42366-PB 3..297 11..306 497 36.3 Plus
CG42366-PA 706 CG31711-PA 3..297 11..306 497 36.3 Plus
rl-PI 376 CG12559-PI 37..366 11..341 492 37.2 Plus
rl-PC 376 CG12559-PC 37..366 11..341 492 37.2 Plus
rl-PD 376 CG12559-PD 37..366 11..341 492 37.2 Plus
rl-PE 376 CG12559-PE 37..366 11..341 492 37.2 Plus
CG7236-PD 412 CG7236-PD 15..309 3..295 469 36.8 Plus
CG7236-PE 421 CG7236-PE 24..318 3..295 469 36.8 Plus
CG7236-PB 435 CG7236-PB 38..332 3..295 469 36.8 Plus
CG7236-PC 438 CG7236-PC 41..335 3..295 469 36.8 Plus
Cdk12-PC 1157 CG7597-PC 792..1112 4..308 469 33.6 Plus
Cdk12-PA 1157 CG7597-PA 792..1112 4..308 469 33.6 Plus
Cdk12-PB 1157 CG7597-PB 792..1112 4..308 469 33.6 Plus
rl-PG 331 CG12559-PG 7..321 26..341 446 36.5 Plus
Cdk4-PE 317 CG5072-PE 26..256 12..238 444 43 Plus
Cdk4-PD 317 CG5072-PD 26..256 12..238 444 43 Plus
Cdk4-PB 317 CG5072-PB 26..256 12..238 444 43 Plus
Cdk4-PA 317 CG5072-PA 26..256 12..238 444 43 Plus
Cdk4-PC 317 CG5072-PC 26..256 12..238 444 43 Plus
Cdk8-PA 454 CG10572-PA 27..354 18..310 435 33.7 Plus
p38a-PC 366 CG5475-PC 25..325 12..308 430 35.3 Plus
p38a-PB 366 CG5475-PB 25..325 12..308 430 35.3 Plus
p38a-PA 366 CG5475-PA 25..325 12..308 430 35.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15304-PA 349 GI15304-PA 1..349 1..353 1676 89.5 Plus
Dmoj\GI10591-PA 314 GI10591-PA 14..289 18..297 618 43.4 Plus
Dmoj\GI18275-PA 297 GI18275-PA 2..287 10..295 616 41.6 Plus
Dmoj\GI19456-PA 294 GI19456-PA 2..288 10..297 606 41.3 Plus
Dmoj\GI12497-PA 637 GI12497-PA 316..608 8..299 555 38.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14332-PA 350 GL14332-PA 1..350 1..353 1670 88.1 Plus
Dper\GL19151-PA 297 GL19151-PA 2..287 10..295 620 40.5 Plus
Dper\GL11507-PA 294 GL11507-PA 2..288 10..297 609 41.3 Plus
Dper\GL27348-PA 314 GL27348-PA 14..289 18..297 596 42.7 Plus
Dper\GL10557-PA 388 GL10557-PA 55..355 12..308 587 39 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17354-PA 350 GA17354-PA 1..350 1..353 1670 88.1 Plus
Dpse\GA20894-PA 294 GA20894-PA 2..288 10..297 609 41.3 Plus
Dpse\GA10356-PA 314 GA10356-PA 14..289 18..297 596 42.7 Plus
Dpse\GA12412-PA 388 GA12412-PA 55..355 12..308 587 39 Plus
Dpse\GA19870-PA 295 GA19870-PA 8..294 11..295 532 39 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12652-PA 353 GM12652-PA 1..353 1..353 1859 98.3 Plus
Dsec\GM11695-PA 297 GM11695-PA 2..287 10..295 607 40.5 Plus
Dsec\GM20132-PA 294 GM20132-PA 3..291 11..300 605 41 Plus
Dsec\GM23132-PA 314 GM23132-PA 6..289 10..297 596 41.2 Plus
Dsec\GM26375-PA 295 GM26375-PA 8..294 11..295 545 39.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24595-PA 353 GD24595-PA 1..353 1..353 1864 98.6 Plus
Dsim\GD25609-PA 294 GD25609-PA 3..291 11..300 605 41 Plus
Dsim\GD19371-PA 314 GD19371-PA 6..289 10..297 597 41.2 Plus
Dsim\GD13773-PA 521 GD13773-PA 200..492 8..299 557 38.9 Plus
Dsim\GD20897-PA 295 GD20897-PA 8..294 11..295 545 39.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16576-PA 352 GJ16576-PA 1..352 1..353 1654 90.1 Plus
Dvir\GJ15416-PA 298 GJ15416-PA 2..287 10..295 607 41 Plus
Dvir\GJ21207-PA 294 GJ21207-PA 2..293 10..302 606 40.6 Plus
Dvir\GJ12403-PA 521 GJ12403-PA 200..492 8..299 556 38.9 Plus
Dvir\GJ20206-PA 388 GJ20206-PA 55..365 12..323 537 39.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10332-PA 355 GK10332-PA 1..355 1..353 1662 88.2 Plus
Dwil\GK15066-PA 322 GK15066-PA 5..320 6..324 1120 64.1 Plus
Dwil\GK21950-PA 294 GK21950-PA 2..291 10..300 613 41.2 Plus
Dwil\GK22466-PA 314 GK22466-PA 6..287 10..295 607 42.9 Plus
Dwil\GK23499-PA 296 GK23499-PA 2..296 10..304 602 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16821-PA 353 GE16821-PA 1..353 1..353 1836 96.9 Plus
Dyak\GE14145-PA 294 GE14145-PA 2..291 10..300 608 40.9 Plus
Dyak\GE26009-PA 297 GE26009-PA 2..287 10..295 607 40.5 Plus
Dyak\cdc2c-PA 314 GE25682-PA 6..289 10..297 597 41.2 Plus
Dyak\GE10241-PA 295 GE10241-PA 8..294 11..295 543 39.3 Plus

IP01401.hyp Sequence

Translation from 42 to 1103

> IP01401.hyp
MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIKKGSRED
ARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEV
IIKDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGI
LKIGDFGLAKSFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVG
CILAELMLRVPFMPGDSDLDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFR
NFPGTPLDNIFTAAGNDLIHLMQRLFAMNPLRRVSCREALSMPYFANKPA
PTVGPKLPMPSAILAAKEGANPQTGDTKPALKRKLVETTVRGNGLAQKKR
LQF*

IP01401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-PA 353 CG3319-PA 1..353 1..353 1831 100 Plus
Cdk2-PC 314 CG10498-PC 6..289 10..297 605 41.2 Plus
Cdk2-PB 314 CG10498-PB 6..289 10..297 605 41.2 Plus
Cdk2-PA 314 CG10498-PA 6..289 10..297 605 41.2 Plus
Cdk1-PA 297 CG5363-PA 2..287 10..295 592 40.5 Plus