Clone IP01419 Report

Search the DGRC for IP01419

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:14
Well:19
Vector:pOT2
Associated Gene/Transcriptsc-RA
Protein status:IP01419.pep: gold
Preliminary Size:1422
Sequenced Size:1432

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3827 2005-01-01 Successful iPCR screen
sc 2008-04-29 Release 5.5 accounting
sc 2008-08-15 Release 5.9 accounting
sc 2008-12-18 5.12 accounting

Clone Sequence Records

IP01419.complete Sequence

1432 bp (1432 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022151

> IP01419.complete
TCAAACGATCAAGTTCAAGTATTGTACTCTGTTCATTTATTTTTTTCTGT
TGATCGTTATCCGGAAAGTTAAAGAAAGCTCCGAGTGTGTTAATGAAAAA
TAATAATAATACAACGAAAAGCACTACCATGTCATCGAGTGTGCTGTCCA
CCAACGAAACGTTTCCAACGACCATCAATTCGGCAACGAAGATCTTTCGT
TATCAGCACATAATGCCAGCCCCTAGTCCATTAATTCCCGGTGGCAATCA
AAATCAACCCGCTGGCACAATGCCAATTAAGACTCGCAAGTATACACCAA
GGGGTATGGCACTGACCAGATGCTCTGAATCAGTATCATCTCTATCGCCT
GGTTCCTCGCCGGCTCCATATAATGTAGACCAATCCCAGTCGGTCCAAAG
GCGCAATGCTAGAGAACGAAATCGTGTAAAGCAGGTGAACAACAGCTTCG
CCAGGTTGCGGCAACATATACCACAATCCATAATCACGGATTTGACAAAG
GGTGGTGGTCGAGGACCTCACAAAAAGATCTCCAAAGTAGACACACTGCG
CATTGCCGTCGAGTACATCCGGAGGCTTCAGGATCTGGTGGATGACCTAA
ATGGGGGCAGCAATATTGGTGCCAACAATGCAGTCACCCAGCTTCAACTT
TGTTTGGATGAGTCCAGCAGTCACAGTTCGAGCAGCAGTACTTGCAGTTC
CTCAGGGCATAATACCTACTATCAAAACACGATCTCTGTCAGTCCTCTGC
AACAACAGCAGCAGCTACAGAGGCAGCAGTTCAATCACCAACCGCTGACA
GCGCTCTCATTAAATACCAACTTGGTGGGCACATCCGTACCAGGTGGAGA
TGCAGGATGCGTATCCACCAGCAAAAACCAGCAAACCTGCCACTCGCCAA
CATCATCATTCAACTCCAGCATGTCCTTTGATTCAGGCACCTACGAAGGA
GTTCCCCAACAAATATCCACCCACCTGGATCGTCTGGATCATCTGGACAA
CGAATTACACACGCACTCCCAACTTCAGCTAAAATTTGAACCGTACGAAC
ATTTTCAATTAGACGAGGAGGACTGCACCCCCGACGACGAGGAGATTTTG
GACTACATCTCTCTATGGCAGGAGCAGTGACTTAATCCCCAAAATTTACC
ACCACGCCCTATTTTCTTCTAGTCAATGTTGAGTTGAACCAAGTGCCTCA
AATTGTAAATAACACTAATACAAAAACAACATACCCCCAATTTTTTTTTC
TTACTTTAAGCTATTTTTTTACATTGTTAAGAACCACGAGACCAGTTTCA
AATTTATATATTTATGAAATAACTATAGCATGGAAACGAAAACATATTTT
TTTGCTAATACAATTTTATGTTAATTAGTTTTTGGTGGAAAAATAAAATG
AAAAAATTAAACGAAAAAAAAAAAAAAAAAAA

IP01419.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 sc-RA 26..1438 1..1413 7065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 290111..291522 1..1413 7000 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:31:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396085..397502 1..1418 7090 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 404183..405600 1..1418 7090 100 Plus
Blast to na_te.dros performed 2019-03-16 08:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 750..921 150 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 747..922 136 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 750..831 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2528..2788 664..921 126 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 747..921 124 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 747..778 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 691..802 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 749..831 121 63.9 Plus
transib2 2844 transib2 TRANSIB2 2844bp 218..325 1306..1197 120 61.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 747..821 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 747..919 116 59.6 Plus
X-element 4740 X-element ROXELEMENT 4740bp 147..194 1325..1372 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 753..921 112 56.8 Plus
Stalker 7256 Stalker STALKER 7256bp 6292..6397 1313..1412 112 59.8 Plus

IP01419.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:16:28 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 290111..291522 1..1413 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:06 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 93..1130 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:35 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 93..1130 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:58 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 93..1130 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:17 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 93..1130 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:38:07 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 93..1130 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:27:08 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 26..1438 1..1413 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:35 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 26..1438 1..1413 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:58 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 26..1438 1..1413 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:17 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 26..1422 1..1397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:38:07 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 26..1438 1..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:28 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
X 396085..397497 1..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:28 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
X 396085..397497 1..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:28 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
X 396085..397497 1..1413 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:58 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 290118..291530 1..1413 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:51 Download gff for IP01419.complete
Subject Subject Range Query Range Percent Splice Strand
X 404183..405595 1..1413 100   Plus

IP01419.pep Sequence

Translation from 92 to 1129

> IP01419.pep
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQ*

IP01419.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21450-PA 326 GF21450-PA 1..326 13..345 1005 70.9 Plus
Dana\GF21451-PA 257 GF21451-PA 47..257 69..345 267 35.3 Plus
Dana\GF21449-PA 415 GF21449-PA 17..97 83..168 250 59.6 Plus
Dana\GF21452-PA 483 GF21452-PA 182..250 99..166 171 63.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\sc-PA 335 GG12783-PA 1..335 13..345 1486 95.5 Plus
Dere\l(1)sc-PA 256 GG12784-PA 76..256 92..345 253 39.4 Plus
Dere\ac-PA 201 GG12781-PA 25..94 100..166 237 65.7 Plus
Dere\ase-PA 484 GG12785-PA 159..227 99..166 168 62.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24340-PA 378 GH24340-PA 1..378 13..345 781 54.9 Plus
Dgri\GH24341-PA 284 GH24341-PA 89..201 92..218 221 49.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
sc-PA 345 CG3827-PA 1..345 1..345 1800 100 Plus
l(1)sc-PA 257 CG3839-PA 77..257 92..345 309 38.2 Plus
ac-PA 201 CG3796-PA 25..199 100..344 264 35.2 Plus
ase-PA 486 CG3258-PA 130..268 69..198 210 41.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10998-PA 361 GI10998-PA 3..361 10..345 874 60.3 Plus
Dmoj\GI10997-PA 262 GI10997-PA 60..131 100..168 252 69.4 Plus
Dmoj\GI11000-PA 664 GI11000-PA 216..284 99..166 165 62.3 Plus
Dmoj\GI10999-PA 266 GI10999-PA 94..247 97..239 160 43.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20378-PA 347 GL20378-PA 23..347 22..345 866 63.5 Plus
Dper\GL20377-PA 225 GL20377-PA 29..100 100..168 245 66.7 Plus
Dper\GL20379-PA 264 GL20379-PA 74..151 90..168 221 67.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29095-PA 371 GA29095-PA 23..371 22..345 915 65.1 Plus
Dpse\GA17691-PA 226 GA17691-PA 29..100 100..168 245 66.7 Plus
Dpse\GA17723-PA 264 GA17723-PA 74..151 90..168 221 67.1 Plus
Dpse\GA17007-PA 619 GA17007-PA 189..254 99..163 167 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19062-PA 334 GM19062-PA 1..334 13..345 1730 97.6 Plus
Dsec\GM19060-PA 201 GM19060-PA 25..94 100..166 235 65.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\sc-PA 334 GD16501-PA 1..334 13..345 1730 97.6 Plus
Dsim\l(1)sc-PA 257 GD16503-PA 77..257 92..345 238 36.3 Plus
Dsim\GD16504-PA 466 GD16504-PA 159..227 99..166 168 62.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\sc-PA 351 GJ15596-PA 3..351 10..345 891 62.8 Plus
Dvir\ac-PA 220 GJ15592-PA 29..100 100..168 256 70.8 Plus
Dvir\GJ15597-PA 284 GJ15597-PA 56..161 56..168 218 52.2 Plus
Dvir\GJ15598-PA 616 GJ15598-PA 179..247 99..166 167 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25270-PA 377 GK25270-PA 41..377 22..345 894 61.1 Plus
Dwil\GK25269-PA 236 GK25269-PA 30..101 100..168 246 66.7 Plus
Dwil\GK25271-PA 280 GK25271-PA 97..168 96..168 226 74 Plus
Dwil\GK25272-PA 652 GK25272-PA 212..280 99..166 167 62.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\sc-PA 334 GE16610-PA 1..334 13..345 1495 96.1 Plus
Dyak\l(1)sc-PA 256 GE16611-PA 76..256 92..345 263 40.2 Plus
Dyak\ac-PA 201 GE16609-PA 25..94 100..166 237 65.7 Plus
Dyak\ase-PA 494 GE16612-PA 130..227 69..166 171 49.5 Plus

IP01419.hyp Sequence

Translation from 92 to 1129

> IP01419.hyp
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQ*

IP01419.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
sc-PA 345 CG3827-PA 1..345 1..345 1800 100 Plus
l(1)sc-PA 257 CG3839-PA 77..257 92..345 309 38.2 Plus
ac-PA 201 CG3796-PA 25..199 100..344 264 35.2 Plus
ase-PA 486 CG3258-PA 130..268 69..198 210 41.4 Plus