Clone IP01423 Report

Search the DGRC for IP01423

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:14
Well:23
Vector:pOT2
Associated Gene/Transcriptgcm2-RA
Protein status:IP01423.pep: gold
Preliminary Size:2181
Sequenced Size:2257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3858 2005-01-01 Successful iPCR screen
gcm2 2008-04-29 Release 5.5 accounting
gcm2 2008-08-15 Release 5.9 accounting
gcm2 2008-12-18 5.12 accounting

Clone Sequence Records

IP01423.complete Sequence

2257 bp (2257 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022152

> IP01423.complete
CGTCGCGTGCGCAATTCAGTTCAATCCAATCCAATCCGTTCCGAGGAGCT
TCAACTAGCGACGGCTATCCGCGAGATACAAGTGCCCAGTGGATACAAGT
GTCGCCTAATTGGATTACAATGCTCAAGTGTTGCCTGTTCGCGGGCTTTC
GAATCGCGGAAAACTCATTTAGGAGCAGTTGAGGTTTTATTGGATATTTT
TAATTATACCACCTAATACCTGGATTAAAGAAGCTGCTTCAATTGGAATA
TGGTTGTTATAAATGGCTACAGCTTCAAGACGCAGCAACTTCTCACACAG
CAACCCGATCATTCTCAGCTTACCCAGTTTGTCCAGCCCCAAAGTCAGAG
TACGCATTCGGTGCATCCGGGTCCAAGTCCTGGTCAACAGCAGGCGGGTG
GCTCCATGACCATGCCGTCGTCGTCGACGGGCAAGGGAAAACGGGAGTGG
GACATCAATGATGCCATTGTGCCACATGTGCCGGACCAGGAGTTCGACGA
GTTCAACGAGTGGAGCGACGGGCATGTGAGGCACATCTATTCGCTGCACA
ACGAGGAGGCCAAGAAGCACATTTCCGGCTGGGCCATGCGCAACACGAAC
AACCACAACGTGAACATTCTGAAGAAGAGCTGCCTGGGCGTCCTGGTCTG
CTCCCAACACTGCACCCTGCCCAACGGATCCAAGATCAACCTGCGCCCAG
CCATTTGCGACAAAGCCCGGCGGAAGCAGGAGGGCAAGGCGTGTCCCAAC
AAAAGTTGTCGTGGCGGTAGACTAGAGATTAAACCGTGTCGCGGTCACTG
CGGCTATCCGGTGACCCACTTCTGGCGGCACTCCGGCAATGCCATCTTTT
TTCAGGCCAAGGGAGTGCATGATCACCTGCGTCCGGATCCGAAGAACTCC
AGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCGCTGGCTGGAAAGTCAGC
CAACGGATCAGTCGCCAAGAAGTCGGTCATTGCGGGTCTGGTCAAGCAGG
CGAAGCAACAACACAGTCTGATTAGCAAGGTTCTTAAGCGTCCTGCTGTC
AGCAATCCTCTGGCTCACACCGCATTGGATATATATCAGTATAATGCCTG
TGGCAAGTGCGCCGGTTATAGCCACTGCACTTGCAGCTACCTGGATGACA
GCACCACGGCGAGGAGCCATCAGTTGTCACAATCCTCGAATTACGGCACC
AATTCTTGGCCACTAAGTGGATCCGAGTCATCGGCACCCTGCGAGACGGC
AGCTAATGTGTTTACGGTCAACCACCAGCACATCACCTATAACTATCCCA
TCTACCATGCAACTCCAGCGGCGGCCACCGCGGCACCTAGTAAATCTCCC
AGTTTGCCCTACGCCTGCAGCATTTCGGAACTGGCCGCATACCAGCAATC
CTCCAGCGGGAACAGCTTTGCGATGGGTGTTCCCGTGCACGGACACACAC
AATGCCAGGCAGTAGCCTATGATTCCAGCCCGCAACTGGCCACTCCGGAA
CCGGAGTTCATCAACTACTCGCAGATCAAGCATTTGGGTGGTGGCGGTGG
TCAGGAGGAGATCAGCTGCAAGGCCGAACCGGGACCCACCATTAAGTACA
ATGCCACCGTGGAGACGCAGCCGTATGTGGAGGACAACTACGATTACTAC
TATAGCCCCAAGGCGGAGTACGAAATGCAACAGCACCACCACCAGCAGCA
GCAGAGCCACCAACAGTTCGGTGGAAATCAGACAGCGGGACATCACTACT
ACGAGAGCAGTAGTGGCTATAATGGAGTCAGCTATTTCGACACAGGAACT
ACTACGGCACCAGGAAATACTGCAACCGGAAATGGCCTGGAAGTCGGATA
CGGCGGCTACTACGATCACTACACCAGCTACGAGCAACAAATGGCGGTAG
CAGGTGGATTTGCCACTGCCGGAGGATCCACTGCGCCGACAGTGGCCGCG
CCCCCTGGCCATCCACCGCCTCCACCACCACCGCCCACGCTGACGTACCA
CCATCACCATCACCACCACTTGCACCACCCAGCAGCAGCTACAGGCCTAG
CCCCATCGGTCACCCATTGAATAGTACTTAACCAATCCGGACACCGGAGG
ATTACTCATAGTCGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGTG
GTGAAATCTTAATTTCCATCTGTACGTGTAGTGTTAAACGGTTTACCAAT
TGTTTTTCTCGGCAAATAAATTATGAAAAGTGTTGATTTGTAAAAAAAAA
AAAAAAA

IP01423.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2455 gcm2-RA 171..2416 1..2245 11190 99.9 Plus
gcm2-RB 2958 gcm2-RB 974..2958 261..2245 9925 100 Plus
gcm-RA 2228 gcm-RA 381..456 576..651 230 86.8 Plus
gcm-RA 2228 gcm-RA 592..629 790..827 160 94.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9610399..9611544 1096..2241 5625 99.4 Plus
chr2L 23010047 chr2L 9609440..9610184 261..1005 3605 98.9 Plus
chr2L 23010047 chr2L 9607503..9607763 1..260 1255 99.6 Plus
chr2L 23010047 chr2L 9610248..9610340 1004..1096 465 100 Plus
chr2L 23010047 chr2L 9580026..9580286 749..489 285 73.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:31:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611561..9612710 1096..2245 5750 100 Plus
2L 23513712 2L 9610602..9611346 261..1005 3725 100 Plus
2L 23513712 2L 9608648..9608908 1..260 1255 99.6 Plus
2L 23513712 2L 9611410..9611502 1004..1096 465 100 Plus
2L 23513712 2L 9581198..9581458 749..489 285 73.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611561..9612710 1096..2245 5750 100 Plus
2L 23513712 2L 9610602..9611346 261..1005 3725 100 Plus
2L 23513712 2L 9608648..9608908 1..260 1265 99.6 Plus
2L 23513712 2L 9611410..9611502 1004..1096 465 100 Plus
2L 23513712 2L 9581296..9581371 651..576 230 86.8 Minus
2L 23513712 2L 9581048..9581085 827..790 160 94.7 Minus
Blast to na_te.dros performed 2019-03-16 01:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1181 1669..1800 180 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7010 1678..1894 177 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..7240 1677..2163 170 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2662 1677..2018 167 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6529..6898 1674..2044 158 54.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2856 1677..2063 144 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2548 1667..1895 138 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6859 1673..1816 138 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2393..2476 1634..1715 127 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1580 1677..1716 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1041..1134 1673..1762 117 62.8 Plus
G5 4856 G5 G5_DM 4856bp 2111..2165 1112..1167 115 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2527 1678..1812 114 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6874 1667..1716 114 71.7 Plus

IP01423.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:26:08 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9607503..9607763 1..260 99 -> Plus
chr2L 9609440..9610184 261..1005 98 -> Plus
chr2L 9610250..9610340 1006..1096 100 -> Plus
chr2L 9610400..9611265 1097..1962 99 == Plus
chr2L 9611333..9611544 2030..2241 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:07 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 250..2070 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:36 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 250..2070 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:02 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 250..2070 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:18 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 250..2070 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:33:25 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 250..2070 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:27:10 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 170..2411 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:36 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 170..2411 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:02 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 87..2328 1..2241 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:18 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 170..2411 1..2241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:33:25 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 87..2328 1..2241 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:08 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9608648..9608908 1..260 99 -> Plus
2L 9610602..9611346 261..1005 100 -> Plus
2L 9611412..9611502 1006..1096 100 -> Plus
2L 9611562..9612706 1097..2241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:08 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9608648..9608908 1..260 99 -> Plus
2L 9610602..9611346 261..1005 100 -> Plus
2L 9611412..9611502 1006..1096 100 -> Plus
2L 9611562..9612706 1097..2241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:08 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9608648..9608908 1..260 99 -> Plus
2L 9610602..9611346 261..1005 100 -> Plus
2L 9611412..9611502 1006..1096 100 -> Plus
2L 9611562..9612706 1097..2241 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:02 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9608648..9608908 1..260 99 -> Plus
arm_2L 9610602..9611346 261..1005 100 -> Plus
arm_2L 9611412..9611502 1006..1096 100 -> Plus
arm_2L 9611562..9612706 1097..2241 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:52 Download gff for IP01423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9611412..9611502 1006..1096 100 -> Plus
2L 9608648..9608908 1..260 99 -> Plus
2L 9610602..9611346 261..1005 100 -> Plus
2L 9611562..9612706 1097..2241 100   Plus

IP01423.pep Sequence

Translation from 249 to 2069

> IP01423.pep
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTH*

IP01423.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22779-PA 593 GF22779-PA 1..549 1..551 2169 78.5 Plus
Dana\GF21907-PA 498 GF21907-PA 29..249 66..284 674 57.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10041-PA 477 GG10041-PA 1..477 1..474 2329 94.8 Plus
Dere\GG24019-PA 710 GG24019-PA 239..430 66..254 649 61.4 Plus
Dere\GG10042-PA 132 GG10042-PA 16..132 490..606 383 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10675-PA 647 GH10675-PA 33..626 1..583 1821 65 Plus
Dgri\GH11056-PA 536 GH11056-PA 28..184 66..225 665 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-PA 606 CG3858-PA 1..606 1..606 3331 100 Plus
gcm-PB 504 CG12245-PB 18..230 53..260 637 59.2 Plus
gcm-PA 504 CG12245-PA 18..230 53..260 637 59.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11073-PA 648 GI11073-PA 1..583 1..548 1769 65.3 Plus
Dmoj\GI17574-PA 527 GI17574-PA 46..233 66..265 676 63.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18919-PA 614 GL18919-PA 1..559 1..545 1626 61.7 Plus
Dper\GL19218-PA 523 GL19218-PA 33..230 66..275 645 56.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17734-PA 617 GA17734-PA 33..560 52..545 1625 64.5 Plus
Dpse\GA11505-PA 521 GA11505-PA 33..274 66..315 651 51 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17569-PA 602 GM17569-PA 1..602 1..606 3125 97.4 Plus
Dsec\GM12386-PA 506 GM12386-PA 33..240 66..271 649 57.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23617-PA 430 GD23617-PA 28..430 203..606 2068 98 Plus
Dsim\GD22349-PA 504 GD22349-PA 33..240 66..271 618 57 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18313-PA 626 GJ18313-PA 65..603 59..583 1809 68.2 Plus
Dvir\GJ17916-PA 538 GJ17916-PA 22..223 53..266 687 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23867-PA 585 GK23867-PA 6..545 5..548 1767 66.5 Plus
Dwil\GK23810-PA 496 GK23810-PA 29..233 66..267 642 57.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18856-PA 609 GE18856-PA 1..609 1..606 2594 92 Plus
Dyak\GE10457-PA 511 GE10457-PA 37..234 66..260 654 61.1 Plus

IP01423.hyp Sequence

Translation from 249 to 2069

> IP01423.hyp
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTH*

IP01423.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-PA 606 CG3858-PA 1..606 1..606 3331 100 Plus
gcm-PB 504 CG12245-PB 18..230 53..260 637 59.2 Plus
gcm-PA 504 CG12245-PA 18..230 53..260 637 59.2 Plus