BDGP Sequence Production Resources |
Search the DGRC for IP01423
Library: | IP |
Tissue Source: | Pooled D melanogaster cDNA libraries |
Created by: | |
Date Registered: | 2004-07-08 |
Comments: | |
Original Plate Number: | 14 |
Well: | 23 |
Vector: | pOT2 |
Associated Gene/Transcript | gcm2-RA |
Protein status: | IP01423.pep: gold |
Preliminary Size: | 2181 |
Sequenced Size: | 2257 |
Gene | Date | Evidence |
---|---|---|
CG3858 | 2005-01-01 | Successful iPCR screen |
gcm2 | 2008-04-29 | Release 5.5 accounting |
gcm2 | 2008-08-15 | Release 5.9 accounting |
gcm2 | 2008-12-18 | 5.12 accounting |
2257 bp (2257 high quality bases) assembled on 2005-08-25
GenBank Submission: BT022152
> IP01423.complete CGTCGCGTGCGCAATTCAGTTCAATCCAATCCAATCCGTTCCGAGGAGCT TCAACTAGCGACGGCTATCCGCGAGATACAAGTGCCCAGTGGATACAAGT GTCGCCTAATTGGATTACAATGCTCAAGTGTTGCCTGTTCGCGGGCTTTC GAATCGCGGAAAACTCATTTAGGAGCAGTTGAGGTTTTATTGGATATTTT TAATTATACCACCTAATACCTGGATTAAAGAAGCTGCTTCAATTGGAATA TGGTTGTTATAAATGGCTACAGCTTCAAGACGCAGCAACTTCTCACACAG CAACCCGATCATTCTCAGCTTACCCAGTTTGTCCAGCCCCAAAGTCAGAG TACGCATTCGGTGCATCCGGGTCCAAGTCCTGGTCAACAGCAGGCGGGTG GCTCCATGACCATGCCGTCGTCGTCGACGGGCAAGGGAAAACGGGAGTGG GACATCAATGATGCCATTGTGCCACATGTGCCGGACCAGGAGTTCGACGA GTTCAACGAGTGGAGCGACGGGCATGTGAGGCACATCTATTCGCTGCACA ACGAGGAGGCCAAGAAGCACATTTCCGGCTGGGCCATGCGCAACACGAAC AACCACAACGTGAACATTCTGAAGAAGAGCTGCCTGGGCGTCCTGGTCTG CTCCCAACACTGCACCCTGCCCAACGGATCCAAGATCAACCTGCGCCCAG CCATTTGCGACAAAGCCCGGCGGAAGCAGGAGGGCAAGGCGTGTCCCAAC AAAAGTTGTCGTGGCGGTAGACTAGAGATTAAACCGTGTCGCGGTCACTG CGGCTATCCGGTGACCCACTTCTGGCGGCACTCCGGCAATGCCATCTTTT TTCAGGCCAAGGGAGTGCATGATCACCTGCGTCCGGATCCGAAGAACTCC AGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCGCTGGCTGGAAAGTCAGC CAACGGATCAGTCGCCAAGAAGTCGGTCATTGCGGGTCTGGTCAAGCAGG CGAAGCAACAACACAGTCTGATTAGCAAGGTTCTTAAGCGTCCTGCTGTC AGCAATCCTCTGGCTCACACCGCATTGGATATATATCAGTATAATGCCTG TGGCAAGTGCGCCGGTTATAGCCACTGCACTTGCAGCTACCTGGATGACA GCACCACGGCGAGGAGCCATCAGTTGTCACAATCCTCGAATTACGGCACC AATTCTTGGCCACTAAGTGGATCCGAGTCATCGGCACCCTGCGAGACGGC AGCTAATGTGTTTACGGTCAACCACCAGCACATCACCTATAACTATCCCA TCTACCATGCAACTCCAGCGGCGGCCACCGCGGCACCTAGTAAATCTCCC AGTTTGCCCTACGCCTGCAGCATTTCGGAACTGGCCGCATACCAGCAATC CTCCAGCGGGAACAGCTTTGCGATGGGTGTTCCCGTGCACGGACACACAC AATGCCAGGCAGTAGCCTATGATTCCAGCCCGCAACTGGCCACTCCGGAA CCGGAGTTCATCAACTACTCGCAGATCAAGCATTTGGGTGGTGGCGGTGG TCAGGAGGAGATCAGCTGCAAGGCCGAACCGGGACCCACCATTAAGTACA ATGCCACCGTGGAGACGCAGCCGTATGTGGAGGACAACTACGATTACTAC TATAGCCCCAAGGCGGAGTACGAAATGCAACAGCACCACCACCAGCAGCA GCAGAGCCACCAACAGTTCGGTGGAAATCAGACAGCGGGACATCACTACT ACGAGAGCAGTAGTGGCTATAATGGAGTCAGCTATTTCGACACAGGAACT ACTACGGCACCAGGAAATACTGCAACCGGAAATGGCCTGGAAGTCGGATA CGGCGGCTACTACGATCACTACACCAGCTACGAGCAACAAATGGCGGTAG CAGGTGGATTTGCCACTGCCGGAGGATCCACTGCGCCGACAGTGGCCGCG CCCCCTGGCCATCCACCGCCTCCACCACCACCGCCCACGCTGACGTACCA CCATCACCATCACCACCACTTGCACCACCCAGCAGCAGCTACAGGCCTAG CCCCATCGGTCACCCATTGAATAGTACTTAACCAATCCGGACACCGGAGG ATTACTCATAGTCGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGTG GTGAAATCTTAATTTCCATCTGTACGTGTAGTGTTAAACGGTTTACCAAT TGTTTTTCTCGGCAAATAAATTATGAAAAGTGTTGATTTGTAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gcm2-RA | 2455 | gcm2-RA | 171..2416 | 1..2245 | 11190 | 99.9 | Plus |
gcm2-RB | 2958 | gcm2-RB | 974..2958 | 261..2245 | 9925 | 100 | Plus |
gcm-RA | 2228 | gcm-RA | 381..456 | 576..651 | 230 | 86.8 | Plus |
gcm-RA | 2228 | gcm-RA | 592..629 | 790..827 | 160 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9610399..9611544 | 1096..2241 | 5625 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 9609440..9610184 | 261..1005 | 3605 | 98.9 | Plus |
chr2L | 23010047 | chr2L | 9607503..9607763 | 1..260 | 1255 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 9610248..9610340 | 1004..1096 | 465 | 100 | Plus |
chr2L | 23010047 | chr2L | 9580026..9580286 | 749..489 | 285 | 73.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9611561..9612710 | 1096..2245 | 5750 | 100 | Plus |
2L | 23513712 | 2L | 9610602..9611346 | 261..1005 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9608648..9608908 | 1..260 | 1255 | 99.6 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 1004..1096 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581198..9581458 | 749..489 | 285 | 73.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9611561..9612710 | 1096..2245 | 5750 | 100 | Plus |
2L | 23513712 | 2L | 9610602..9611346 | 261..1005 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9608648..9608908 | 1..260 | 1265 | 99.6 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 1004..1096 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581296..9581371 | 651..576 | 230 | 86.8 | Minus |
2L | 23513712 | 2L | 9581048..9581085 | 827..790 | 160 | 94.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1058..1181 | 1669..1800 | 180 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7010 | 1678..1894 | 177 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..7240 | 1677..2163 | 170 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2662 | 1677..2018 | 167 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6529..6898 | 1674..2044 | 158 | 54.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2856 | 1677..2063 | 144 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2548 | 1667..1895 | 138 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6859 | 1673..1816 | 138 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2476 | 1634..1715 | 127 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1580 | 1677..1716 | 119 | 77.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1134 | 1673..1762 | 117 | 62.8 | Plus |
G5 | 4856 | G5 G5_DM 4856bp | 2111..2165 | 1112..1167 | 115 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2527 | 1678..1812 | 114 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6874 | 1667..1716 | 114 | 71.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9607503..9607763 | 1..260 | 99 | -> | Plus |
chr2L | 9609440..9610184 | 261..1005 | 98 | -> | Plus |
chr2L | 9610250..9610340 | 1006..1096 | 100 | -> | Plus |
chr2L | 9610400..9611265 | 1097..1962 | 99 | == | Plus |
chr2L | 9611333..9611544 | 2030..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 1..1821 | 250..2070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 1..1821 | 250..2070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 1..1821 | 250..2070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 1..1821 | 250..2070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 1..1821 | 250..2070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 170..2411 | 1..2241 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 170..2411 | 1..2241 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 87..2328 | 1..2241 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 170..2411 | 1..2241 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm2-RA | 87..2328 | 1..2241 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9608648..9608908 | 1..260 | 99 | -> | Plus |
2L | 9610602..9611346 | 261..1005 | 100 | -> | Plus |
2L | 9611412..9611502 | 1006..1096 | 100 | -> | Plus |
2L | 9611562..9612706 | 1097..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9608648..9608908 | 1..260 | 99 | -> | Plus |
2L | 9610602..9611346 | 261..1005 | 100 | -> | Plus |
2L | 9611412..9611502 | 1006..1096 | 100 | -> | Plus |
2L | 9611562..9612706 | 1097..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9608648..9608908 | 1..260 | 99 | -> | Plus |
2L | 9610602..9611346 | 261..1005 | 100 | -> | Plus |
2L | 9611412..9611502 | 1006..1096 | 100 | -> | Plus |
2L | 9611562..9612706 | 1097..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9608648..9608908 | 1..260 | 99 | -> | Plus |
arm_2L | 9610602..9611346 | 261..1005 | 100 | -> | Plus |
arm_2L | 9611412..9611502 | 1006..1096 | 100 | -> | Plus |
arm_2L | 9611562..9612706 | 1097..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9611412..9611502 | 1006..1096 | 100 | -> | Plus |
2L | 9608648..9608908 | 1..260 | 99 | -> | Plus |
2L | 9610602..9611346 | 261..1005 | 100 | -> | Plus |
2L | 9611562..9612706 | 1097..2241 | 100 | Plus |
Translation from 249 to 2069
> IP01423.pep MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL APSVTH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22779-PA | 593 | GF22779-PA | 1..549 | 1..551 | 2169 | 78.5 | Plus |
Dana\GF21907-PA | 498 | GF21907-PA | 29..249 | 66..284 | 674 | 57.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10041-PA | 477 | GG10041-PA | 1..477 | 1..474 | 2329 | 94.8 | Plus |
Dere\GG24019-PA | 710 | GG24019-PA | 239..430 | 66..254 | 649 | 61.4 | Plus |
Dere\GG10042-PA | 132 | GG10042-PA | 16..132 | 490..606 | 383 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10675-PA | 647 | GH10675-PA | 33..626 | 1..583 | 1821 | 65 | Plus |
Dgri\GH11056-PA | 536 | GH11056-PA | 28..184 | 66..225 | 665 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gcm2-PA | 606 | CG3858-PA | 1..606 | 1..606 | 3331 | 100 | Plus |
gcm-PB | 504 | CG12245-PB | 18..230 | 53..260 | 637 | 59.2 | Plus |
gcm-PA | 504 | CG12245-PA | 18..230 | 53..260 | 637 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11073-PA | 648 | GI11073-PA | 1..583 | 1..548 | 1769 | 65.3 | Plus |
Dmoj\GI17574-PA | 527 | GI17574-PA | 46..233 | 66..265 | 676 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18919-PA | 614 | GL18919-PA | 1..559 | 1..545 | 1626 | 61.7 | Plus |
Dper\GL19218-PA | 523 | GL19218-PA | 33..230 | 66..275 | 645 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17734-PA | 617 | GA17734-PA | 33..560 | 52..545 | 1625 | 64.5 | Plus |
Dpse\GA11505-PA | 521 | GA11505-PA | 33..274 | 66..315 | 651 | 51 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17569-PA | 602 | GM17569-PA | 1..602 | 1..606 | 3125 | 97.4 | Plus |
Dsec\GM12386-PA | 506 | GM12386-PA | 33..240 | 66..271 | 649 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23617-PA | 430 | GD23617-PA | 28..430 | 203..606 | 2068 | 98 | Plus |
Dsim\GD22349-PA | 504 | GD22349-PA | 33..240 | 66..271 | 618 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18313-PA | 626 | GJ18313-PA | 65..603 | 59..583 | 1809 | 68.2 | Plus |
Dvir\GJ17916-PA | 538 | GJ17916-PA | 22..223 | 53..266 | 687 | 58.1 | Plus |
Translation from 249 to 2069
> IP01423.hyp MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL APSVTH*