Clone IP01491 Report

Search the DGRC for IP01491

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:14
Well:91
Vector:pOT2
Associated Gene/TranscriptHer-RA
Protein status:IP01491.pep: gold
Preliminary Size:450
Sequenced Size:631

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5927 2005-01-01 Successful iPCR screen
Her 2008-04-29 Release 5.5 accounting
Her 2008-08-15 Release 5.9 accounting
Her 2008-12-18 5.12 accounting

Clone Sequence Records

IP01491.complete Sequence

631 bp (631 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022141

> IP01491.complete
CGAAGGTGGAGCTGGGCCAGGCTTATGATGGCACGTCCCGAGGAGCAGAA
GTCTCATGTTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTA
AGCCAATGATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGAC
TTTATTAAGGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCAT
GGCCAAAATGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGA
GCAAGAAAAACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGA
GTATATCAGAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGT
CCTGGAAGTGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCG
AATTTGCGAAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAG
CCAAATCTCTGGAGGCCCTGGTAGTCGTCATGGGAAATATCCACTTAAGT
TCCTCAACTCACAATTTTTAAATAGGATAATTATAAACTATTTAGACCCA
AGTCCACTAAAGACAGTTTTACAATAGAGGCATGAAATAAAACTGCACAT
TCGTTTTTTGCTTTAAAAAAAAAAAAAAAAA

IP01491.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Her-RA 656 Her-RA 64..656 1..593 2965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18093572..18094000 614..186 2145 100 Minus
chrX 22417052 chrX 18094127..18094313 187..1 935 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:31:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18204401..18204831 616..186 2155 100 Minus
X 23542271 X 18204958..18205144 187..1 935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18212499..18212929 616..186 2155 100 Minus
X 23527363 X 18213056..18213242 187..1 935 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:36:50 has no hits.

IP01491.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:37:42 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18093572..18093999 187..614 100 <- Minus
chrX 18094128..18094313 1..186 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:18 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:27 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:54:14 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:33:10 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:06 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:26:57 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:27 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..614 1..614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:54:14 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..614 1..614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:10 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 25..474 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:06 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..614 1..614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:42 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
X 18204403..18204830 187..614 100 <- Minus
X 18204959..18205144 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:42 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
X 18204403..18204830 187..614 100 <- Minus
X 18204959..18205144 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:37:42 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
X 18204403..18204830 187..614 100 <- Minus
X 18204959..18205144 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:54:14 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18098436..18098863 187..614 100 <- Minus
arm_X 18098992..18099177 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:43 Download gff for IP01491.complete
Subject Subject Range Query Range Percent Splice Strand
X 18212501..18212928 187..614 100 <- Minus
X 18213057..18213242 1..186 100   Minus

IP01491.hyp Sequence

Translation from 0 to 473

> IP01491.hyp
RRWSWARLMMARPEEQKSHVGAKSRSHQYREVFKPMMERKRRSRINRCLD
FIKDLLQEVSHLDGETMAKMDMGDVLELAVHHLSKKNCPVATPTTAPTSG
VYQSPIDCYWSGFRECVLEVSQFLQHNGYQPSFEFAKELDHLVASTSKSK
PNLWRPW*

IP01491.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Her-PA 149 CG5927-PA 1..149 9..157 802 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 8..114 24..124 188 37.4 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 10..108 24..124 185 39.6 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 6..113 24..124 183 35.2 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 10..105 24..121 166 36.4 Plus

IP01491.pep Sequence

Translation from 24 to 473

> IP01491.pep
MMARPEEQKSHVGAKSRSHQYREVFKPMMERKRRSRINRCLDFIKDLLQE
VSHLDGETMAKMDMGDVLELAVHHLSKKNCPVATPTTAPTSGVYQSPIDC
YWSGFRECVLEVSQFLQHNGYQPSFEFAKELDHLVASTSKSKPNLWRPW*

IP01491.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22522-PA 160 GF22522-PA 18..158 13..149 298 43.3 Plus
Dana\GF16799-PA 224 GF16799-PA 6..114 16..116 190 35.8 Plus
Dana\GF18225-PA 200 GF18225-PA 8..69 16..77 184 50 Plus
Dana\GF16796-PA 205 GF16796-PA 11..108 17..116 181 38 Plus
Dana\GF16801-PA 180 GF16801-PA 8..97 16..116 177 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18139-PA 146 GG18139-PA 1..146 2..149 491 63.2 Plus
Dere\GG11454-PA 226 GG11454-PA 6..113 16..116 190 35.2 Plus
Dere\GG11450-PA 205 GG11450-PA 10..108 16..116 189 39.6 Plus
Dere\GG12207-PA 195 GG12207-PA 8..69 16..77 183 50 Plus
Dere\GG11449-PA 173 GG11449-PA 10..108 16..116 176 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18148-PA 210 GH18148-PA 8..113 16..116 187 36.8 Plus
Dgri\GH19456-PA 228 GH19456-PA 6..115 16..116 185 35.5 Plus
Dgri\GH19452-PA 217 GH19452-PA 11..109 17..116 182 38.3 Plus
Dgri\GH19458-PA 207 GH19458-PA 8..101 16..116 175 38.6 Plus
Dgri\GH19451-PA 198 GH19451-PA 10..84 16..90 142 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hesr-PA 149 CG5927-PA 1..149 1..149 802 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 8..114 16..116 188 37.4 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 10..108 16..116 185 39.6 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 6..113 16..116 183 35.2 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 10..105 16..113 166 36.4 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 8..76 16..81 166 49.3 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 5..98 16..116 139 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24686-PA 217 GI24686-PA 5..109 11..116 188 37.2 Plus
Dmoj\GI24690-PA 229 GI24690-PA 6..117 16..116 185 36.6 Plus
Dmoj\GI22910-PA 210 GI22910-PA 8..69 16..77 184 50 Plus
Dmoj\GI24692-PA 207 GI24692-PA 7..67 15..77 166 49.2 Plus
Dmoj\GI24693-PA 173 GI24693-PA 5..100 16..116 159 34.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27048-PA 217 GL27048-PA 84..217 16..149 286 38.1 Plus
Dper\GL21815-PA 214 GL21815-PA 4..110 10..118 201 39.4 Plus
Dper\GL21819-PA 225 GL21819-PA 6..112 16..116 193 35.5 Plus
Dper\GL22021-PA 200 GL22021-PA 8..69 16..77 183 50 Plus
Dper\GL21822-PA 207 GL21822-PA 8..107 16..116 165 38.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19235-PA 217 GA19235-PA 84..217 16..149 295 38.8 Plus
Dpse\GA20996-PA 214 GA20996-PA 4..110 10..118 201 40.4 Plus
Dpse\GA21008-PA 219 GA21008-PA 6..112 16..116 193 35.5 Plus
Dpse\GA13073-PA 200 GA13073-PA 8..69 16..77 183 50 Plus
Dpse\GA21018-PA 206 GA21018-PA 8..107 16..116 167 38.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22831-PA 149 GM22831-PA 1..149 1..149 637 77.8 Plus
Dsec\GM10297-PA 221 GM10297-PA 6..113 16..116 191 35.2 Plus
Dsec\GM10294-PA 205 GM10294-PA 10..108 16..116 189 39.6 Plus
Dsec\GM10206-PA 195 GM10206-PA 8..114 16..116 188 37.4 Plus
Dsec\GM10293-PA 173 GM10293-PA 10..108 16..116 176 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24666-PA 149 GD24666-PA 1..149 1..149 643 78.4 Plus
Dsim\HLHm3-PA 224 GD21261-PA 6..113 16..116 191 35.2 Plus
Dsim\HLHmgamma-PA 205 GD21258-PA 10..108 16..116 189 39.6 Plus
Dsim\HLHmbeta-PA 195 GD18157-PA 8..69 16..77 183 50 Plus
Dsim\HLHmdelta-PA 173 GD21257-PA 10..108 16..116 176 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18995-PA 146 GJ18995-PA 5..146 7..149 275 41.4 Plus
Dvir\GJ23323-PA 209 GJ23323-PA 8..113 16..116 190 37.7 Plus
Dvir\GJ23903-PA 217 GJ23903-PA 5..109 11..116 189 37.2 Plus
Dvir\GJ23906-PA 220 GJ23906-PA 6..115 16..116 184 33.6 Plus
Dvir\GJ23909-PA 197 GJ23909-PA 8..100 16..116 165 38.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14455-PA 209 GK14455-PA 10..109 16..116 190 39.8 Plus
Dwil\GK14458-PA 223 GK14458-PA 6..112 16..116 188 35.5 Plus
Dwil\GK14459-PA 200 GK14459-PA 8..103 16..116 183 39.6 Plus
Dwil\GK12809-PA 201 GK12809-PA 8..69 16..77 182 50 Plus
Dwil\GK19874-PA 95 GK19874-PA 7..65 14..72 170 50.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23647-PA 224 GE23647-PA 6..113 16..116 191 35.2 Plus
Dyak\HLHmgamma-PA 205 GE23644-PA 10..108 16..116 189 39.6 Plus
Dyak\HLHmbeta-PA 195 GE10652-PA 8..114 16..116 189 36.4 Plus
Dyak\HLHmdelta-PA 173 GE23643-PA 10..108 16..116 178 35.3 Plus
Dyak\HLHm7-PA 186 GE23649-PA 8..98 16..116 174 38.7 Plus