Clone IP01717 Report

Search the DGRC for IP01717

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:17
Well:17
Vector:pOT2
Associated Gene/Transcriptvih-RA
Protein status:IP01717.pep: gold
Preliminary Size:1108
Sequenced Size:1432

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10682 2005-01-01 Successful iPCR screen
vih 2008-04-29 Release 5.5 accounting
vih 2008-08-15 Release 5.9 accounting
vih 2008-12-18 5.12 accounting

Clone Sequence Records

IP01717.complete Sequence

1432 bp (1432 high quality bases) assembled on 2006-06-12

GenBank Submission: BT028772

> IP01717.complete
CAAAAGTGAAAAAAAAATATCTGAAAAAGCAACAGACGCGTATTCCGACC
GATCAAACTAAATTTCCACTATACAGTACATATAATCACAATTGAGAATC
GAAAACCCGACCGCCACGAAGCGCGCTAAATTACACGCACATACTGAAAG
CCAAACAGCGGATAGCACTAGCATCCCACATATATAGACGTAGATATATA
GTCATGGCGCAGAATATCAGCCCCGAGCAAAGTGGTGGAGCAGGCGGCGG
CGGCAGCAAGCACAGCGATGACTCCATGCCCGTGAAAGACAATCACGCCG
TGAGCAAAAGACTGCACAAGGAACTGATGAACCTGATGATGGCCAACGAG
AGGGGCATCTCAGCGTTTCCGGACGGCGAGAACATCTTCAAGTGGGTGGG
CACCATAGCGGGTCCACGGAACACGGTGTATTCGGGGCAAACGTATCGTT
TGTCACTGGATTTTCCCAATTCCTATCCGTATGCAGCACCCGTGGTGAAG
TTCCTGACGTCCTGCTTCCATCCCAATGTTGATCTGCAGGGCGCCATCTG
TTTGGACATACTGAAGGACAAATGGTCGGCCCTGTACGATGTGCGCACCA
TTCTGCTGTCCATACAATCCCTGCTGGGCGAACCGAACAACGAGAGTCCA
CTGAATGCGCAGGCCGCGATGATGTGGAATGACCAAAAGGAGTACAAAAA
ATATCTAGACGCCTTCTACGAGAAGCACAAGGACACCTAGAGTTTGGCAA
TTCGTTGTCATATATCCTATGCTCATATTGCGGCGTATTTATTTACATAT
AGTGCAAGCAACTCCACTCATCCGAAGACCTACTGCCAACCAACAAACCA
ATCATCAATCACCACCGTAACACAGTACCATCAGTTAAGTGGATCACCAG
ATCAATTTCAACAACGTTCAATGCTGATAGTTCATTTGGCAAAAGACCCC
GTGCGTTTCTTATGTAATTGTCGATCGATTGACGGATAATCTGGTTTTTA
TTCTCATTTCTTTCCTCCTCCCTACAAATTAATGATAAATGAATGTATTG
GTAATGTAATTTTAAAACTGTCATCCGTTCTTTAAGCTTAAGGATAAATT
TTAGTTAATTGTTTTATATACGCATGATTACTTTTTTGAGAACTACTGCG
AGTGCGCGCCATCGCCATCGCCATTTTTTTGTACTGATGATTTTTAAGCG
ACTATGCTGCTGCGCCGGCCATTATGTGAATGTTAGCTAATTTTAGGGCA
GCCTCATCGATTCGTCAACCATTCGCGTCGTCTTAGTATCTCCAATTATG
CGGCATTCTCCCACAATACTGGCATAACAAAATTCCAAGTAATTCGAATC
ATTGTAACAGTTGTGTTAGCTTGATGTTATTGAAACCACAAATAAAACGA
ATTATTGAACTACAAAAAAAAAAAAAAAAAAA

IP01717.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
vih-RA 1586 vih-RA 129..1543 1..1414 7020 99.8 Plus
CG10654-RA 1707 CG10654-RA 1259..1707 1414..966 2245 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12495323..12496428 309..1413 5420 99.5 Plus
chr3L 24539361 chr3L 12494957..12495258 9..310 1495 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:32:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12504717..12505822 309..1414 5530 100 Plus
3L 28110227 3L 12504351..12504652 9..310 1495 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12497817..12498922 309..1414 5530 100 Plus
3L 28103327 3L 12497442..12497752 1..310 1500 99.3 Plus
Blast to na_te.dros performed on 2019-03-15 12:09:53 has no hits.

IP01717.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:11:13 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12494948..12495258 1..310 99 -> Plus
chr3L 12495325..12496428 311..1413 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:35 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 1..537 204..740 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:22:07 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 1..537 204..740 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:57 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 1..537 204..740 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:40:32 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 1..537 204..740 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:52:35 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 1..537 204..740 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:50:29 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 56..1469 1..1413 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:22:07 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 56..1469 1..1413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:57 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 51..1464 1..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:40:32 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 41..1108 1..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:52:35 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
vih-RA 51..1464 1..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:13 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12504342..12504652 1..310 99 -> Plus
3L 12504719..12505821 311..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:13 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12504342..12504652 1..310 99 -> Plus
3L 12504719..12505821 311..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:13 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12504342..12504652 1..310 99 -> Plus
3L 12504719..12505821 311..1413 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:57 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12497442..12497752 1..310 99 -> Plus
arm_3L 12497819..12498921 311..1413 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:50:33 Download gff for IP01717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12497442..12497752 1..310 99 -> Plus
3L 12497819..12498921 311..1413 100   Plus

IP01717.hyp Sequence

Translation from 203 to 739

> IP01717.hyp
MAQNISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMANER
GISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF
LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPL
NAQAAMMWNDQKEYKKYLDAFYEKHKDT*

IP01717.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
vih-PA 178 CG10682-PA 1..178 1..178 949 100 Plus
Ubc6-PC 151 CG2013-PC 7..147 35..174 298 41.1 Plus
Ubc6-PA 151 CG2013-PA 7..147 35..174 298 41.1 Plus
ben-PE 151 CG18319-PE 3..129 32..158 292 43.3 Plus
ben-PD 151 CG18319-PD 3..129 32..158 292 43.3 Plus

IP01717.pep Sequence

Translation from 203 to 739

> IP01717.pep
MAQNISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMANER
GISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF
LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPL
NAQAAMMWNDQKEYKKYLDAFYEKHKDT*

IP01717.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10430-PA 177 GF10430-PA 1..177 1..178 935 97.8 Plus
Dana\GF16080-PA 151 GF16080-PA 7..147 35..174 307 41.1 Plus
Dana\GF19231-PA 151 GF19231-PA 3..129 32..158 296 43.3 Plus
Dana\GF18131-PA 147 GF18131-PA 4..132 35..163 279 40.3 Plus
Dana\GF14068-PA 224 GF14068-PA 57..224 10..175 275 35.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15578-PA 178 GG15578-PA 1..178 1..178 957 98.9 Plus
Dere\GG11277-PA 151 GG11277-PA 7..147 35..174 307 41.1 Plus
Dere\GG24249-PA 151 GG24249-PA 3..133 32..162 300 44.3 Plus
Dere\GG17819-PA 151 GG17819-PA 3..129 32..158 296 43.3 Plus
Dere\GG21088-PA 147 GG21088-PA 4..132 35..163 279 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14710-PA 176 GH14710-PA 1..176 1..178 888 92.7 Plus
Dgri\GH15302-PA 151 GH15302-PA 7..147 35..174 307 41.1 Plus
Dgri\GH22592-PA 151 GH22592-PA 3..129 32..158 301 44.1 Plus
Dgri\GH17677-PA 151 GH17677-PA 4..129 33..158 294 43.7 Plus
Dgri\GH14086-PA 147 GH14086-PA 4..132 35..163 279 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
vih-PA 178 CG10682-PA 1..178 1..178 949 100 Plus
Ubc6-PC 151 CG2013-PC 7..147 35..174 298 41.1 Plus
Ubc6-PA 151 CG2013-PA 7..147 35..174 298 41.1 Plus
ben-PE 151 CG18319-PE 3..129 32..158 292 43.3 Plus
ben-PD 151 CG18319-PD 3..129 32..158 292 43.3 Plus
ben-PB 151 CG18319-PB 3..129 32..158 292 43.3 Plus
ben-PC 151 CG18319-PC 3..129 32..158 292 43.3 Plus
ben-PA 151 CG18319-PA 3..129 32..158 292 43.3 Plus
CG3473-PB 151 CG3473-PB 3..129 32..158 290 45.7 Plus
CG3473-PA 151 CG3473-PA 3..129 32..158 290 45.7 Plus
CG10862-PA 354 CG10862-PA 198..331 22..155 276 38.8 Plus
eff-PC 147 CG7425-PC 4..132 35..163 272 40.3 Plus
eff-PB 147 CG7425-PB 4..132 35..163 272 40.3 Plus
eff-PA 147 CG7425-PA 4..132 35..163 272 40.3 Plus
Ubc2-PD 232 CG6720-PD 64..217 13..163 272 37.7 Plus
Ubc2-PC 232 CG6720-PC 64..217 13..163 272 37.7 Plus
Ubc2-PB 232 CG6720-PB 64..217 13..163 272 37.7 Plus
Ubc2-PA 232 CG6720-PA 64..217 13..163 272 37.7 Plus
Ubc7-PB 167 CG4443-PB 7..149 35..163 253 37.8 Plus
Ubc7-PA 167 CG4443-PA 7..149 35..163 253 37.8 Plus
CG5440-PC 169 CG5440-PC 20..142 30..153 253 44.4 Plus
CG5440-PB 169 CG5440-PB 20..142 30..153 253 44.4 Plus
CG7656-PF 317 CG7656-PF 20..188 15..163 242 32.5 Plus
CG7656-PA 317 CG7656-PA 20..188 15..163 242 32.5 Plus
CG7656-PE 319 CG7656-PE 20..187 15..162 240 32.7 Plus
CG7656-PD 319 CG7656-PD 20..187 15..162 240 32.7 Plus
CG40045-PA 168 CG40045-PA 10..147 37..160 237 36.2 Plus
Ubc87F-PA 168 CG9602-PA 10..155 37..174 232 35.5 Plus
Ubc4-PC 199 CG8284-PC 3..137 30..161 225 39.3 Plus
Ubc4-PB 199 CG8284-PB 3..137 30..161 225 39.3 Plus
Ubc4-PA 199 CG8284-PA 3..137 30..161 225 39.3 Plus
CG2574-PA 239 CG2574-PA 66..180 36..150 225 38.3 Plus
CG40045-PD 167 CG40045-PD 10..146 37..160 218 35.5 Plus
Ubc10-PA 154 CG5788-PA 5..149 35..177 211 31.1 Plus
morgue-PA 491 CG15437-PA 347..469 43..163 199 37.9 Plus
lwr-PD 159 CG3018-PD 32..150 56..170 194 37 Plus
lwr-PC 159 CG3018-PC 32..150 56..170 194 37 Plus
lwr-PB 159 CG3018-PB 32..150 56..170 194 37 Plus
lwr-PA 159 CG3018-PA 32..150 56..170 194 37 Plus
CG7220-PE 190 CG7220-PE 39..155 29..141 192 36.8 Plus
CG7220-PF 190 CG7220-PF 39..155 29..141 192 36.8 Plus
CG7220-PB 190 CG7220-PB 39..155 29..141 192 36.8 Plus
UbcE2H-PB 183 CG2257-PB 40..148 70..175 191 33 Plus
UbcE2H-PC 183 CG2257-PC 40..148 70..175 191 33 Plus
UbcE2H-PA 183 CG2257-PA 40..148 70..175 191 33 Plus
UbcE2M-PC 181 CG7375-PC 22..147 28..155 190 32 Plus
UbcE2M-PB 181 CG7375-PB 22..147 28..155 190 32 Plus
UbcE2M-PA 181 CG7375-PA 22..147 28..155 190 32 Plus
Ubc84D-PA 153 CG12799-PA 2..149 32..177 188 28.5 Plus
CG7220-PC 154 CG7220-PC 9..119 35..141 185 36.9 Plus
CG7220-PA 154 CG7220-PA 9..119 35..141 185 36.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12257-PA 176 GI12257-PA 1..176 1..178 892 93.3 Plus
Dmoj\GI22506-PA 151 GI22506-PA 7..147 35..174 307 41.1 Plus
Dmoj\GI22711-PA 151 GI22711-PA 3..129 32..158 301 44.1 Plus
Dmoj\GI21493-PA 151 GI21493-PA 3..129 32..158 298 43.3 Plus
Dmoj\GI10619-PA 147 GI10619-PA 4..132 35..163 279 40.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25195-PA 176 GL25195-PA 1..176 1..178 890 92.7 Plus
Dper\GL22213-PA 151 GL22213-PA 7..147 35..174 307 41.1 Plus
Dper\GL14825-PA 151 GL14825-PA 3..129 32..158 296 43.3 Plus
Dper\GL22516-PA 220 GL22516-PA 35..197 5..166 280 34.8 Plus
Dper\GL23670-PA 147 GL23670-PA 4..132 35..163 279 40.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10491-PA 176 GA10491-PA 1..176 1..178 896 93.3 Plus
Dpse\GA15184-PA 151 GA15184-PA 7..147 35..174 307 41.1 Plus
Dpse\GA14886-PA 151 GA14886-PA 3..129 32..158 296 43.3 Plus
Dpse\GA26693-PA 147 GA26693-PA 4..132 35..163 279 40.3 Plus
Dpse\GA15184-PB 118 GA15184-PB 3..114 64..174 271 44.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25349-PA 177 GM25349-PA 1..177 1..178 936 98.3 Plus
Dsec\GM10669-PA 151 GM10669-PA 7..147 35..174 307 41.1 Plus
Dsec\GM16552-PA 151 GM16552-PA 3..130 32..159 305 46.1 Plus
Dsec\GM14762-PA 151 GM14762-PA 3..130 32..159 305 46.1 Plus
Dsec\GM17649-PA 151 GM17649-PA 3..129 32..158 296 43.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14382-PA 177 GD14382-PA 1..177 1..178 936 98.3 Plus
Dsim\GD19645-PA 151 GD19645-PA 7..147 35..174 307 41.1 Plus
Dsim\GD21999-PA 151 GD21999-PA 3..130 32..159 305 46.1 Plus
Dsim\GD17149-PA 151 GD17149-PA 3..129 32..158 296 43.3 Plus
Dsim\GD13323-PA 362 GD13323-PA 206..346 22..162 290 36.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11488-PA 176 GJ11488-PA 1..176 1..178 892 93.3 Plus
Dvir\GJ10109-PA 151 GJ10109-PA 7..147 35..174 307 41.1 Plus
Dvir\GJ23435-PA 151 GJ23435-PA 3..129 32..158 301 44.1 Plus
Dvir\GJ19035-PA 151 GJ19035-PA 4..129 33..158 297 43.7 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 4..132 35..163 279 40.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12523-PA 177 GK12523-PA 1..177 1..178 903 93.8 Plus
Dwil\GK14053-PA 151 GK14053-PA 7..147 35..174 307 41.1 Plus
Dwil\GK25846-PA 151 GK25846-PA 3..129 32..158 296 43.3 Plus
Dwil\GK21643-PA 151 GK21643-PA 4..134 33..163 294 42.7 Plus
Dwil\GK11688-PA 147 GK11688-PA 4..132 35..163 279 40.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21906-PA 178 GE21906-PA 1..178 1..178 957 98.9 Plus
Dyak\GE25319-PA 151 GE25319-PA 7..147 35..174 307 41.1 Plus
Dyak\GE24917-PA 151 GE24917-PA 3..133 32..162 297 44.3 Plus
Dyak\GE17114-PA 151 GE17114-PA 3..129 32..158 296 43.3 Plus
Dyak\eff-PA 147 GE26430-PA 4..132 35..163 279 40.3 Plus