Clone IP01862 Report

Search the DGRC for IP01862

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:18
Well:62
Vector:pOT2
Associated Gene/TranscriptGr58b-RA
Protein status:IP01862.pep: gold
Preliminary Size:1227
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Gr58b 2008-04-29 Picked prior to 5.5
Gr58b 2008-08-15 Release 5.9 accounting
Gr58b 2008-12-18 5.12 accounting

Clone Sequence Records

IP01862.complete Sequence

1438 bp assembled on 2008-06-09

GenBank Submission: BT033047

> IP01862.complete
TCGGCACGAGGCAGCATGTTGCATCCGAAACTTGGTCGCGTGATGAACGT
GGTCTACTACCATTCCGTTGTCTTCGCCCTAATGAGCACTACCCTAAGGA
TACGCTCCTGCAGGAAATGCCTACGCTTGGAAAAGGTCTCGCGAACTTAC
ACCATCTACAGTTTCTTTGTGGGCATATTCCTGTTTCTAAACTTGTACTT
CATGGTGCCTCGGATCATGGAAGATGGCTACATGAAGTACAACATAGTCC
TGCAGTGGAACTTCTTTGTGATGCTCTTCCTTAGAGCCATCGCTGTGGTG
AGCTGCTATGGAACCCTGTGGCTAAAGCGCCACAAAATCATTCAGCTCTA
TAAATACTCGCTGATATATTGGAAGAGGTTCGGACACATAACGAGGGCCA
TAGTGGACAAGAAAGAACTCCTTGACCTACAAGAGTCCTTGGCCAGAATA
ATGATCCGGAAAATAATATTACTCTATAGTGCTTTTCTGTGCTCCACTGT
GTTGCAGTATCAATTGCTCAGTGTGATTAACCCACAGATTTTCCTGGCTT
TCTGTGCCCGGCTCACGCACTTTCTGCACTTCTTGTGCGTGAAAATGGGT
TTCTTCGGGGTACTGGTTCTACTGAATCATCAATTTTTGGTAATCCATCT
GGCCATAAACGCTCTTCATGGTAGGAAAGCCCGGAAGAAATGGAAAGCTC
TGCGTTCCGTAGCCGCCATGCATCTGAAAACCCTTCGATTAGCCAGAAGG
ATCTTTGACATGTTTGACATCGCTAATGCCACGGTGTTTATCAACATGTT
TATGACCGCTATTAATATCCTTTATCATGCCGTCCAGTACAGCAATAGCA
GCATCAAGTCAAATGGTTGGGGCATCTTATTTGGCAACGGATTGATCGTT
TTCAACTTCTGGGGCACCATGGCGCTGATGGAAATGCTGGATAGTGTGGT
GACCTCCTGCAACAACACTGGCCAGCAACTAAGGCAACTTAGCGATCTAC
CAAAAGTGGGTCCAAAGATGCAAAGGGAGTTGGATGTTTTTACCATGCAG
CTGAGGCAGAATCGGTTGGTCTACAAAATATGCGGAATTGTGGAGCTGGA
CAAACCCGCTTGCCTTAGTTATATTGGCTCCATTCTGAGCAACGTCATTA
TCCTCATGCAGTTCGATTTGAGACGGCAAAGACAACCCATCAATGATCGT
CAATATCTCATCCATTTGATGAAGAACAAAACAAAAGTGTAAAGAAAATC
ATATATCTTATATCTATCTACCTAAATGTTCACCATTTATACACGGTTTT
TTTTTTTACCTTGATATGATACATAAACGTAAATCAATCAAGCTTTCAGA
ACTTTACACGAAAATAGAAAGCTTTCTCGCAGCTTACAGGACTCTCAGTC
ATGGGAGTTTTATAGGAAAAAAAAAAAAAAAAAAAAAA

IP01862.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gr58b-RA 1414 Gr58b-RA 9..1414 11..1416 7030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17865006..17866024 1029..11 4975 99.2 Minus
chr2R 21145070 chr2R 17864563..17864950 1416..1028 1850 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:32:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21978659..21979677 1029..11 5095 100 Minus
2R 25286936 2R 21978214..21978603 1417..1028 1950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21979858..21980876 1029..11 5095 100 Minus
2R 25260384 2R 21979413..21979802 1417..1028 1950 100 Minus
Blast to na_custom.ecoli performed on 2008-06-09 15:34:03 has no hits.
Blast to na_te.dros performed on 2019-03-16 20:00:58 has no hits.

IP01862.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:01:59 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17864563..17864948 1030..1416 98 <- Minus
chr2R 17865006..17866024 11..1029 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:54 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1227 16..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:05:23 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1227 16..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:41 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1227 16..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:13:09 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1227 16..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:49 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1227 16..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:32:33 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 9..1414 11..1416 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:05:23 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 9..1414 11..1416 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:41 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1406 11..1416 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:13:10 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 9..1414 11..1416 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:49 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
Gr58b-RA 1..1406 11..1416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:59 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21978215..21978601 1030..1416 100 <- Minus
2R 21978659..21979677 11..1029 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:59 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21978215..21978601 1030..1416 100 <- Minus
2R 21978659..21979677 11..1029 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:01:59 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21978215..21978601 1030..1416 100 <- Minus
2R 21978659..21979677 11..1029 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:41 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17865720..17866106 1030..1416 100 <- Minus
arm_2R 17866164..17867182 11..1029 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:39:06 Download gff for IP01862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21979414..21979800 1030..1416 100 <- Minus
2R 21979858..21980876 11..1029 100   Minus

IP01862.pep Sequence

Translation from 0 to 1241

> IP01862.pep
SARGSMLHPKLGRVMNVVYYHSVVFALMSTTLRIRSCRKCLRLEKVSRTY
TIYSFFVGIFLFLNLYFMVPRIMEDGYMKYNIVLQWNFFVMLFLRAIAVV
SCYGTLWLKRHKIIQLYKYSLIYWKRFGHITRAIVDKKELLDLQESLARI
MIRKIILLYSAFLCSTVLQYQLLSVINPQIFLAFCARLTHFLHFLCVKMG
FFGVLVLLNHQFLVIHLAINALHGRKARKKWKALRSVAAMHLKTLRLARR
IFDMFDIANATVFINMFMTAINILYHAVQYSNSSIKSNGWGILFGNGLIV
FNFWGTMALMEMLDSVVTSCNNTGQQLRQLSDLPKVGPKMQRELDVFTMQ
LRQNRLVYKICGIVELDKPACLSYIGSILSNVIILMQFDLRRQRQPINDR
QYLIHLMKNKTKV*

IP01862.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11606-PA 407 GF11606-PA 1..407 6..413 1376 63.2 Plus
Dana\GF13281-PA 389 GF13281-PA 25..389 42..393 346 29.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20732-PA 408 GG20732-PA 1..408 6..413 1838 84.1 Plus
Dere\GG22153-PA 395 GG22153-PA 32..395 48..398 295 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21352-PA 402 GH21352-PA 12..387 17..396 767 42 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gr58b-PA 408 CG13495-PA 1..408 6..413 2106 100 Plus
Gr58a-PA 395 CG30396-PA 32..395 48..398 347 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20768-PA 396 GI20768-PA 1..383 6..395 669 37.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17503-PA 391 GL17503-PA 1..389 6..394 1064 53.3 Plus
Dper\GL16968-PA 409 GL16968-PA 43..402 48..391 361 28.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr58b-PA 391 GA12328-PA 1..389 6..394 1078 53.1 Plus
Dpse\Gr58a-PA 409 GA15816-PA 43..402 48..391 374 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15676-PA 408 GM15676-PA 1..408 6..413 2016 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25156-PA 408 GD25156-PA 1..408 6..413 2031 93.1 Plus
Dsim\GD11640-PA 300 GD11640-PA 122..300 221..398 258 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20503-PA 390 GJ20503-PA 1..385 6..395 884 44.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15637-PA 353 GK15637-PA 1..328 6..333 653 41.2 Plus
Dwil\GK15940-PA 395 GK15940-PA 39..389 50..393 326 27.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13664-PA 407 GE13664-PA 1..407 6..413 1747 79.2 Plus
Dyak\GE12234-PA 397 GE12234-PA 31..397 47..400 291 26.3 Plus

IP01862.hyp Sequence

Translation from 12 to 1241

> IP01862.hyp
SMLHPKLGRVMNVVYYHSVVFALMSTTLRIRSCRKCLRLEKVSRTYTIYS
FFVGIFLFLNLYFMVPRIMEDGYMKYNIVLQWNFFVMLFLRAIAVVSCYG
TLWLKRHKIIQLYKYSLIYWKRFGHITRAIVDKKELLDLQESLARIMIRK
IILLYSAFLCSTVLQYQLLSVINPQIFLAFCARLTHFLHFLCVKMGFFGV
LVLLNHQFLVIHLAINALHGRKARKKWKALRSVAAMHLKTLRLARRIFDM
FDIANATVFINMFMTAINILYHAVQYSNSSIKSNGWGILFGNGLIVFNFW
GTMALMEMLDSVVTSCNNTGQQLRQLSDLPKVGPKMQRELDVFTMQLRQN
RLVYKICGIVELDKPACLSYIGSILSNVIILMQFDLRRQRQPINDRQYLI
HLMKNKTKV*

IP01862.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gr58b-PA 408 CG13495-PA 1..408 2..409 2106 100 Plus
Gr58a-PA 395 CG30396-PA 32..395 44..394 347 24.3 Plus