Clone IP01865 Report

Search the DGRC for IP01865

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:18
Well:65
Vector:pOT2
Associated Gene/TranscriptObp59a-RB
Protein status:IP01865.pep: validated not full length
Preliminary Size:690
Sequenced Size:1009

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13517 2005-01-01 Successful iPCR screen
Obp59a 2008-04-29 Release 5.5 accounting
Obp59a 2008-08-15 Release 5.9 accounting
Obp59a 2008-12-18 5.12 accounting

Clone Sequence Records

IP01865.complete Sequence

1009 bp (1009 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024441

> IP01865.complete
AGTTGATTTTCCTGCTGATTTGTTTGAGCTGCGGCACCTGCTCCATTTAC
GCACTGAAATGCAGATCCCAGGAGGGACTAAGTGAAGCGGAGCTCAAGCG
AACTGTGCGCAACTGTATGCATCGCCAGGACGAGGACGAAGATCGAGGAC
GAGGTGGACAGGGCCGGCAAGGAAATGGCTATGAGTACGGTTACGGAATG
GATCACGATCAGGAGGAGCAGGACAGGAATCCAGGCAACAGGGGCGGCTA
TGGCAATCGAAGGCAGCGAGGACTAAGGCAATCGGATGGCAGGAACCACA
CCAGCAACGATGGAGGTCAGTGTGTGGCCCAGTGCTTTTTCGAGGAGATG
AATATGGTGGATGGCAATGGGATGCCCGATCGGCGCAAGGTGAGCTATTT
GCTGACCAAGGACCTTCGGGACCGGGAGCTGCGCAACTTCTTCACGGACA
CCGTGCAGCAGTGCTTCCGCTATCTGGAGAGCAACGGAAGGGGCCGGCAC
CACAAGTGTTCAGCGGCCCGGGAACTGGTCAAGTGCATGTCGGAGTACGC
GAAGGCGCAGTGCGAGGATTGGGAGGAGCACGGCAACATGCTCTTCAATT
AGGATTAAACTCACCCCACTTTTTAGGTCCTCGCAGCGGTCCAAGAAACG
CTCGTGGTTGTCCCGGATCCCGCCATCGGTGTTCTCCTCCAGCTGATAGA
AGACGCACTCCAGTTGCTGCTGCTTCTGGGCATGCATCTCCTTGAACGCG
GCGGAGTCCTGCTCCCACTGGCTCAGCACCGCCTGCTTGTCGTCCTCGTA
GATCGTCCGAAAGAACTCGATGCGATCTCTATGGGTATCTGGGTAAAGGA
TAAGAAATAAATGGGTTAGAAATGAGGCCTAGTTGCGTTGAATGGTTTGT
GTCCATTTTAATTTTCATTTTACAATGCTTCTTATTGTTCATAAAATGTA
CATCAAAATACTCCAGTAATTTTTGGATTTCCAAAAAAAAAAAAAAAAAA
AAAAAAAAA

IP01865.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-RB 1009 Obp59a-RB 28..1009 1..982 4910 100 Plus
CG30259-RA 1884 CG30259-RA 541..765 839..615 1125 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18589650..18590277 356..982 2910 97.9 Plus
chr2R 21145070 chr2R 18589202..18589559 1..358 1745 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:32:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22703160..22703789 356..985 3150 100 Plus
2R 25286936 2R 22702724..22703081 1..358 1790 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22704359..22704988 356..985 3150 100 Plus
2R 25260384 2R 22703923..22704280 1..358 1790 100 Plus
Blast to na_te.dros performed 2019-03-16 06:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 1512..1553 974..934 117 78.6 Minus
Ivk 5402 Ivk IVK 5402bp 4888..4943 636..581 109 66.1 Minus

IP01865.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:11:48 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18589202..18589557 1..356 99 -> Plus
chr2R 18589651..18590277 357..982 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:55 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..609 1..602 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:38:11 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..609 1..602 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:04:23 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..609 1..602 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:13:09 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..609 1..602 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:19 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..609 1..602 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:10:03 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..989 1..982 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:38:11 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..989 1..982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:23 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 30..1011 1..982 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:13:09 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 8..989 1..982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:19 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
Obp59a-RB 30..1011 1..982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:48 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22702724..22703079 1..356 100 -> Plus
2R 22703161..22703786 357..982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:48 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22702724..22703079 1..356 100 -> Plus
2R 22703161..22703786 357..982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:48 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22702724..22703079 1..356 100 -> Plus
2R 22703161..22703786 357..982 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:23 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18590229..18590584 1..356 100 -> Plus
arm_2R 18590666..18591291 357..982 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:01:12 Download gff for IP01865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22703923..22704278 1..356 100 -> Plus
2R 22704360..22704985 357..982 100   Plus

IP01865.pep Sequence

Translation from 2 to 601

> IP01865.pep
LIFLLICLSCGTCSIYALKCRSQEGLSEAELKRTVRNCMHRQDEDEDRGR
GGQGRQGNGYEYGYGMDHDQEEQDRNPGNRGGYGNRRQRGLRQSDGRNHT
SNDGGQCVAQCFFEEMNMVDGNGMPDRRKVSYLLTKDLRDRELRNFFTDT
VQQCFRYLESNGRGRHHKCSAARELVKCMSEYAKAQCEDWEEHGNMLFN*

IP01865.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13530-PA 162 GF13530-PA 1..162 39..199 606 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22784-PA 200 GG22784-PA 3..200 1..199 901 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19773-PA 216 GH19773-PA 15..216 15..199 487 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-PB 202 CG13517-PB 4..202 1..199 1099 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20312-PA 218 GI20312-PA 12..218 12..199 507 57.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11370-PA 194 GL11370-PA 2..194 1..199 608 60.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp59a-PA 202 GA12338-PA 2..202 1..199 593 57.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15941-PA 202 GM15941-PA 4..202 1..199 1030 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Obp59a-PA 202 GD11694-PA 4..202 1..199 1030 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Obp59a-PA 215 GJ22039-PA 4..215 1..199 553 57.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19390-PA 208 GK19390-PA 6..207 3..198 506 51 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14014-PA 198 GE14014-PA 15..198 16..199 831 93.5 Plus

IP01865.hyp Sequence

Translation from 2 to 601

> IP01865.hyp
LIFLLICLSCGTCSIYALKCRSQEGLSEAELKRTVRNCMHRQDEDEDRGR
GGQGRQGNGYEYGYGMDHDQEEQDRNPGNRGGYGNRRQRGLRQSDGRNHT
SNDGGQCVAQCFFEEMNMVDGNGMPDRRKVSYLLTKDLRDRELRNFFTDT
VQQCFRYLESNGRGRHHKCSAARELVKCMSEYAKAQCEDWEEHGNMLFN*

IP01865.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Obp59a-PB 202 CG13517-PB 4..202 1..199 1099 100 Plus