Clone IP01949 Report

Search the DGRC for IP01949

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:19
Well:49
Vector:pOT2
Associated Gene/TranscriptmRpS25-RA
Protein status:IP01949.pep: gold
Preliminary Size:504
Sequenced Size:639

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14413 2005-01-01 Successful iPCR screen
mRpS25 2008-04-29 Release 5.5 accounting
mRpS25 2008-08-15 Release 5.9 accounting
mRpS25 2008-12-18 5.12 accounting

Clone Sequence Records

IP01949.complete Sequence

639 bp (639 high quality bases) assembled on 2006-01-26

GenBank Submission: BT024442

> IP01949.complete
TTTTACTTAGGCGTATTTGAATTAAAAGTGCAAAATGCCGTTCATGAAGG
GCCGTGAGCCCATCCGCCGCACCCTGAAGTATCTGAATGCCGGTAAGCTG
GTGCTGAAGGACAAGGTGCGCATTTTCAGCGTGAACTACAACACATATGG
TGCTCATCACGCGGGCGCTCGGGACTTTGTTTTCTGGAACATACCGCAGA
TCCAGTTCAAGAATCCCGAGGTCCAGGTGCTCACGCTGAAGAACATGACG
CCCTCGCCGTTTGTGCGCTGCTACTTCGACGATGGACGCGATATGCTTAT
AGATTTGGACAGTCGGAATCGGAACGACATCATCGATCACCTGGTTAAGG
TGGTGGGCAAAACCCGGGAGCAACTGGACGCAGAGGAGCGCCTAAAGGAG
AGCAAGGACAATCCGGCCAACTTTGGCTACGGATGCGGCAGGCACTGCAT
CTGCGAGATCCCCGGCCAGGTGCCCTGTCCCGGAACCGTGCCGCTGCCCG
ATCACATGCGCGGCAAGATCTTGTTCGCACCCAAATAGACGTTCGCTCTG
ATTGTACCTTTTTTTTTAATAAATTAATTGTAAATTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP01949.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 730 mRpS25-RA 130..716 1..587 2935 100 Plus
CG14414-RA 830 CG14414-RA 791..830 587..548 200 100 Minus
CG14414-RC 844 CG14414-RC 805..844 587..548 200 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14472453..14472673 586..366 1105 100 Minus
chrX 22417052 chrX 14472815..14473011 367..171 985 100 Minus
chrX 22417052 chrX 14473073..14473244 172..1 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:32:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582135..14582356 587..366 1110 100 Minus
X 23542271 X 14582498..14582694 367..171 985 100 Minus
X 23542271 X 14582756..14582927 172..1 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14590233..14590454 587..366 1110 100 Minus
X 23527363 X 14590596..14590792 367..171 985 100 Minus
X 23527363 X 14590854..14591025 172..1 860 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:23:07 has no hits.

IP01949.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:46 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14472486..14472672 367..553 100 <- Minus
chrX 14472816..14473010 172..366 100 <- Minus
chrX 14473074..14473244 1..171 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:16:12 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:44:47 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:08 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:25:39 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:08:23 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:53:02 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:44:47 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 56..641 1..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:08 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 56..641 1..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:25:40 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 35..538 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:08:23 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 56..641 1..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:46 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
X 14582136..14582355 367..586 100 <- Minus
X 14582499..14582693 172..366 100 <- Minus
X 14582757..14582927 1..171 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:46 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
X 14582136..14582355 367..586 100 <- Minus
X 14582499..14582693 172..366 100 <- Minus
X 14582757..14582927 1..171 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:46 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
X 14582136..14582355 367..586 100 <- Minus
X 14582499..14582693 172..366 100 <- Minus
X 14582757..14582927 1..171 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:08 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476169..14476388 367..586 100 <- Minus
arm_X 14476532..14476726 172..366 100 <- Minus
arm_X 14476790..14476960 1..171 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:58:37 Download gff for IP01949.complete
Subject Subject Range Query Range Percent Splice Strand
X 14590234..14590453 367..586 100 <- Minus
X 14590597..14590791 172..366 100 <- Minus
X 14590855..14591025 1..171 100   Minus

IP01949.pep Sequence

Translation from 34 to 537

> IP01949.pep
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPK*

IP01949.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22384-PA 167 GF22384-PA 1..167 1..167 815 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19455-PA 167 GG19455-PA 1..167 1..167 854 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12785-PA 167 GH12785-PA 1..167 1..167 808 88.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-PA 167 CG14413-PA 1..167 1..167 909 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14011-PA 167 GI14011-PA 1..167 1..167 744 79.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20418-PA 167 GL20418-PA 1..167 1..167 825 89.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12964-PA 167 GA12964-PA 1..167 1..167 825 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17546-PA 167 GM17546-PA 1..167 1..167 880 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15848-PA 167 GD15848-PA 1..167 1..167 880 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19070-PA 167 GJ19070-PA 1..167 1..167 738 79 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10306-PA 167 GK10306-PA 1..167 1..167 812 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16111-PA 167 GE16111-PA 1..167 1..167 869 96.4 Plus

IP01949.hyp Sequence

Translation from 34 to 537

> IP01949.hyp
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPK*

IP01949.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-PA 167 CG14413-PA 1..167 1..167 909 100 Plus