Clone IP02074 Report

Search the DGRC for IP02074

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:20
Well:74
Vector:pOT2
Associated Gene/Transcriptrho-6-RB
Protein status:IP02074.pep: gold
Preliminary Size:792
Sequenced Size:921

Clone Sequence Records

IP02074.complete Sequence

921 bp assembled on 2011-08-29

GenBank Submission: BT128859.1

> IP02074.complete
GTTGTCGCCGCCGACTTCGAATCGCATTATGTCTGCCCAAGTGGAGAGCA
ATGGTGCCAGTGAAAGTAATAACAATTGCGTCAAGGATGTCAGGCTCCTG
CTGCTGCCGGAGAATTCCACGGATTCGGATGGCAATCCGGCGAGTGTCGC
ATTCAGTGCGGAATCGCACAAGAAATTCATTGATGACCTGACACGAACCA
TTGACGTGGGCCATGTGAGGAGGAAGCGATTGTGGCGGGTGCCCTGGTTT
ATTTTGCTGATGAGTTTTGTGCAGATATCTTTGCACTGGATAGCTAGTGA
GTGTATGCAAAAAGTACTGATCTTCAAACCGGAATGGAACGTCGAGTACT
GGCGCCTACTGACCTATATGCTGCTCCATTCCGATTACTGGCATCTGTCT
CTCAACATTTGCTTTCAGTGCTTTATAGGTATCTGCCTGGAAGTGGAGCA
GGGTCACTGGCGTCTGGCCGTGGTCTATATGGTGGGTGGCGTCGCTGGTT
CGCTGGCCAATGCCTGGCTGCAGCCCCATCTCCATCTGATGGGTGCCTCC
GCTGGGGTCTACGCCATGCTGGGAAGTCATGTGCCGCACCTGGTTCTGAA
CTTTTCGCAATTGTCGCACCGCTTTGCCCGCATCGCCTCCCTGCTGATAT
TGTTACTCAGCGATGTGGGCTTTACAACTTACCACTTTTGCCACAATCAC
AATCGCAATCCGCGCACCAGTCTGGAGGCGCATATTGGAGGGGGCGTGGC
CGGAATTCTGTGCGGTTTCATCGTCTATCGACGCCTGCAGCCAGCCAATC
AAAAGGCCATTTACTTTTAGTCTCAAATAAGATAGTTCCATTCAAATATA
TATTATATTTATATCATAGTGAAAAATACGTTTTAAAACAAATTGAAGGC
AAAAAAAAAAAAAAAAAAAAA

IP02074.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12129160..12129462 900..598 1500 99.7 Minus
chr2L 23010047 chr2L 12131738..12132011 274..1 1370 100 Minus
chr2L 23010047 chr2L 12129530..12129712 598..416 915 100 Minus
chr2L 23010047 chr2L 12129936..12130082 418..272 735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12130515..12130818 901..598 1520 100 Minus
2L 23513712 2L 12133094..12133367 274..1 1370 100 Minus
2L 23513712 2L 12130886..12131068 598..416 915 100 Minus
2L 23513712 2L 12131292..12131438 418..272 735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12130515..12130818 901..598 1520 100 Minus
2L 23513712 2L 12133094..12133367 274..1 1370 100 Minus
2L 23513712 2L 12130886..12131068 598..416 915 100 Minus
2L 23513712 2L 12131292..12131438 418..272 735 100 Minus
Blast to na_te.dros performed 2019-03-15 10:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 5936..5973 447..409 111 79.5 Minus

IP02074.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:59:15 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12129160..12129461 599..900 92 <- Minus
chr2L 12129530..12129709 419..598 100 <- Minus
chr2L 12129936..12130079 275..418 100 <- Minus
chr2L 12131738..12132011 1..274 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-08-29 15:34:45 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 1..792 29..820 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:30 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 1..792 29..820 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:17:53 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 1..792 29..820 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-29 15:34:44 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 1..900 1..900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:30 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 1..900 1..900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:53 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
rho-6-RB 45..944 1..900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:15 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12130516..12130817 599..900 100 <- Minus
2L 12130886..12131065 419..598 100 <- Minus
2L 12131292..12131435 275..418 100 <- Minus
2L 12133094..12133367 1..274 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:15 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12130516..12130817 599..900 100 <- Minus
2L 12130886..12131065 419..598 100 <- Minus
2L 12131292..12131435 275..418 100 <- Minus
2L 12133094..12133367 1..274 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:15 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12130516..12130817 599..900 100 <- Minus
2L 12130886..12131065 419..598 100 <- Minus
2L 12131292..12131435 275..418 100 <- Minus
2L 12133094..12133367 1..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:30 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12133094..12133367 1..274 100   Minus
arm_2L 12130516..12130817 599..900 100 <- Minus
arm_2L 12130886..12131065 419..598 100 <- Minus
arm_2L 12131292..12131435 275..418 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:46:47 Download gff for IP02074.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12130516..12130817 599..900 100 <- Minus
2L 12130886..12131065 419..598 100 <- Minus
2L 12131292..12131435 275..418 100 <- Minus
2L 12133094..12133367 1..274 100   Minus

IP02074.hyp Sequence

Translation from 0 to 819

> IP02074.hyp
LSPPTSNRIMSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVA
FSAESHKKFIDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASE
CMQKVLIFKPEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQ
GHWRLAVVYMVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLN
FSQLSHRFARIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVA
GILCGFIVYRRLQPANQKAIYF*

IP02074.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
rho-6-PB 263 CG17212-PB 1..263 10..272 1409 100 Plus
rho-6-PC 166 CG17212-PC 1..130 10..139 698 100 Plus
rho-PB 355 CG1004-PB 84..297 63..260 328 32.2 Plus
rho-PA 355 CG1004-PA 84..297 63..260 328 32.2 Plus
ru-PA 341 CG1214-PA 95..284 78..262 317 32.6 Plus

IP02074.pep Sequence

Translation from 1 to 819

> IP02074.pep
LSPPTSNRIMSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVA
FSAESHKKFIDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASE
CMQKVLIFKPEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQ
GHWRLAVVYMVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLN
FSQLSHRFARIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVA
GILCGFIVYRRLQPANQKAIYF*

IP02074.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15679-PA 260 GF15679-PA 1..260 10..272 957 72.3 Plus
Dana\rho-PA 365 GF24766-PA 48..309 3..262 335 27.5 Plus
Dana\GF24760-PA 352 GF24760-PA 104..295 78..262 297 31.2 Plus
Dana\GF21300-PA 418 GF21300-PA 222..378 105..263 286 34 Plus
Dana\GF25034-PA 485 GF25034-PA 222..431 81..263 273 31 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10271-PA 263 GG10271-PA 1..262 10..271 1270 89.3 Plus
Dere\GG14792-PA 353 GG14792-PA 100..297 81..262 328 33.3 Plus
Dere\GG18433-PA 417 GG18433-PA 221..377 105..263 286 33.8 Plus
Dere\GG14787-PA 349 GG14787-PA 103..293 78..263 275 31.9 Plus
Dere\GG14598-PA 485 GG14598-PA 222..431 81..263 265 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11182-PA 229 GH11182-PA 8..229 22..262 772 62.7 Plus
Dgri\GH16240-PA 436 GH16240-PA 171..380 81..262 303 30 Plus
Dgri\GH15206-PA 476 GH15206-PA 221..422 81..263 294 31.7 Plus
Dgri\GH16237-PA 321 GH16237-PA 68..263 73..262 289 32.1 Plus
Dgri\GH24104-PA 420 GH24104-PA 224..380 105..263 285 34.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
rho-6-PB 263 CG17212-PB 1..263 10..272 1409 100 Plus
rho-6-PC 166 CG17212-PC 1..130 10..139 698 100 Plus
rho-PB 355 CG1004-PB 84..297 63..260 328 32.2 Plus
rho-PA 355 CG1004-PA 84..297 63..260 328 32.2 Plus
ru-PA 341 CG1214-PA 95..284 78..262 317 32.6 Plus
rho-4-PB 417 CG1697-PB 221..377 105..263 295 33.3 Plus
rho-4-PA 417 CG1697-PA 221..377 105..263 295 33.3 Plus
stet-PA 330 CG33166-PA 67..276 81..263 264 28.6 Plus
stet-PB 485 CG33166-PB 222..431 81..263 264 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15831-PA 242 GI15831-PA 4..235 20..262 740 61.3 Plus
Dmoj\GI16668-PA 398 GI16668-PA 142..342 81..262 316 31.8 Plus
Dmoj\GI14374-PA 420 GI14374-PA 224..380 105..263 289 34.4 Plus
Dmoj\GI16724-PA 476 GI16724-PA 221..422 81..263 288 30.7 Plus
Dmoj\GI16665-PA 311 GI16665-PA 65..253 79..262 247 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19515-PA 204 GL19515-PA 20..204 28..272 595 55.9 Plus
Dper\GL22503-PA 344 GL22503-PA 100..287 78..262 298 33 Plus
Dper\GL26733-PA 417 GL26733-PA 221..377 105..263 291 34.4 Plus
Dper\GL22587-PA 487 GL22587-PA 223..433 81..263 275 29.4 Plus
Dper\GL22508-PA 342 GL22508-PA 138..284 103..260 199 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14394-PA 252 GA14394-PA 20..252 28..272 862 71 Plus
Dpse\GA11431-PA 336 GA11431-PA 55..279 38..262 303 30.3 Plus
Dpse\GA14244-PA 417 GA14244-PA 221..377 105..263 291 34.4 Plus
Dpse\rho-PA 365 GA10027-PA 138..309 103..262 288 32.6 Plus
Dpse\GA17336-PA 487 GA17336-PA 223..433 81..263 271 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26295-PA 139 GM26295-PA 1..139 10..144 653 89.2 Plus
Dsec\ve-PA 364 GM14413-PA 93..308 63..262 329 31.9 Plus
Dsec\GM13096-PA 417 GM13096-PA 221..377 105..263 283 33.1 Plus
Dsec\GM14406-PA 344 GM14406-PA 98..287 78..262 275 32.6 Plus
Dsec\GM14213-PA 485 GM14213-PA 222..431 81..263 268 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22127-PA 267 GD22127-PA 1..267 10..272 1356 95.9 Plus
Dsim\GD13619-PA 355 GD13619-PA 84..299 63..262 328 31.9 Plus
Dsim\GD17034-PA 382 GD17034-PA 186..342 105..263 286 33.8 Plus
Dsim\GD13615-PA 344 GD13615-PA 98..287 78..262 281 33.2 Plus
Dsim\GD13475-PA 485 GD13475-PA 222..431 81..263 265 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10319-PA 246 GJ10319-PA 6..234 20..263 777 63.5 Plus
Dvir\rho-PA 401 GJ12920-PA 145..345 81..262 317 31.3 Plus
Dvir\GJ12468-PA 476 GJ12468-PA 221..422 81..263 285 31.2 Plus
Dvir\GJ12917-PA 314 GJ12917-PA 44..256 46..262 266 32.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14633-PA 257 GK14633-PA 23..250 28..262 684 59.1 Plus
Dwil\GK16984-PA 391 GK16984-PA 84..335 18..262 332 29 Plus
Dwil\GK17206-PA 475 GK17206-PA 220..421 81..263 293 32.2 Plus
Dwil\GK15930-PA 418 GK15930-PA 224..378 107..263 292 35.4 Plus
Dwil\GK16979-PA 315 GK16979-PA 69..241 76..245 289 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12391-PA 263 GE12391-PA 1..263 10..272 1231 90.5 Plus
Dyak\GE21154-PA 355 GE21154-PA 102..299 81..262 325 33.3 Plus
Dyak\GE15951-PA 417 GE15951-PA 221..377 105..263 286 33.8 Plus
Dyak\GE21150-PA 343 GE21150-PA 79..286 68..262 283 32.2 Plus
Dyak\GE20958-PA 485 GE20958-PA 222..431 81..263 265 28.6 Plus