BDGP Sequence Production Resources |
Search the DGRC for IP02076
Library: | IP |
Tissue Source: | Pooled D melanogaster cDNA libraries |
Created by: | |
Date Registered: | 2004-07-08 |
Comments: | |
Original Plate Number: | 20 |
Well: | 76 |
Vector: | pOT2 |
Associated Gene/Transcript | rho-6-RA |
Protein status: | IP02076.pep: Imported from assembly |
Preliminary Size: | 792 |
Sequenced Size: | 911 |
911 bp assembled on 2009-02-09
GenBank Submission: BT058101.1
> IP02076.complete GTTGTCGCCGCCGACTTCGAATCGCATTATGTCTGCCCAAGTGGAGAGCA ATGGTGCCAGTGAAAGTAATAACAATTGCGTCAAGGATGTCAGGCTCCTG CTGCTGCCGGAGAATTCCACGGATTCGGATGGCAATCCGGCGAGTGTCGC ATTCAGTGCGGAATCGCACATTGATGACCTGACACGAACCATTGACGTGG GCCATGTGAGGAGGAAGCGATTGTGGCGGGTGCCCTGGTTTATTTTGCTG ATGAGTTTTGTGCAGATATCTTTGCACTGGATAGCTAGTGAGTGTATGCA AAAAGTACTGATCTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTAC TGACCTATATGCTGCTCCATTCCGATTACTGGCATCTGTCTCTCAACATT TGCTTTCAGTGCTTTATAGGTATCTGCCTGGAAGTGGAGCAGGGTCACTG GCGTCTGGCCGTGGTCTATATGGTGGGTGGCGTCGCTGGTTCGCTGGCCA ATGCCTGGCTGCAGCCCCATCTCCATCTGATGGGTGCCTCCGCTGGGGTC TACGCCATGCTGGGAAGTCATGTGCCGCACCTGGTTCTGAACTTTTCGCA ATTGTCGCACCGCTTTGCCCGCATCGCCTCCCTGCTGATATTGTTACTCA GCGATGTGGGCTTTACAACTTACCACTTTTGCCACAATCACAATCGCAAT CCGCGCACCAGTCTGGAGGCGCATATTGGAGGGGGCGTGGCCGGAATTCT GTGCGGTTTCATCGTCTATCGACGCCTGCAGCCAGCCAATCAAAAGGCCA TTTACTTTTAGTCTCAAATAAGATAGTTCCATTCAAATATATATTATATT TATATCATAGTGAAAAATACGTTTTAAAACAAATTGAAGGCAAAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-6.a | 1416 | rho-6.a | 163..886 | 169..892 | 3620 | 100 | Plus |
rho-6-RB | 911 | rho-6-RB | 239..911 | 169..841 | 3365 | 100 | Plus |
rho-6-RA | 674 | rho-6-RA | 96..674 | 263..841 | 2895 | 100 | Plus |
rho-6-RB | 911 | rho-6-RB | 62..231 | 1..170 | 850 | 100 | Plus |
rho-6.a | 1416 | rho-6.a | 1..155 | 16..170 | 775 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 12129160..12129462 | 891..589 | 1500 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 12131738..12132011 | 265..1 | 1200 | 96.7 | Minus |
chr2L | 23010047 | chr2L | 12129530..12129712 | 589..407 | 915 | 100 | Minus |
chr2L | 23010047 | chr2L | 12129936..12130082 | 409..263 | 735 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12130515..12130818 | 892..589 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 12133094..12133367 | 265..1 | 1200 | 96.7 | Minus |
2L | 23513712 | 2L | 12130886..12131068 | 589..407 | 915 | 100 | Minus |
2L | 23513712 | 2L | 12131292..12131438 | 409..263 | 735 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 12130515..12130818 | 892..589 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 12130886..12131068 | 589..407 | 915 | 100 | Minus |
2L | 23513712 | 2L | 12133198..12133367 | 170..1 | 850 | 100 | Minus |
2L | 23513712 | 2L | 12131292..12131438 | 409..263 | 735 | 100 | Minus |
2L | 23513712 | 2L | 12133094..12133190 | 265..169 | 485 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 438..400 | 111 | 79.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 12129160..12129461 | 590..891 | 92 | <- | Minus |
chr2L | 12129530..12129709 | 410..589 | 100 | <- | Minus |
chr2L | 12129936..12130079 | 266..409 | 100 | <- | Minus |
chr2L | 12131738..12132011 | 1..265 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..792 | 29..811 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..792 | 29..811 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..792 | 29..811 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..792 | 29..811 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..792 | 29..811 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..900 | 1..891 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 1..900 | 1..891 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-6-RB | 45..944 | 1..891 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12130516..12130817 | 590..891 | 100 | <- | Minus |
2L | 12130886..12131065 | 410..589 | 100 | <- | Minus |
2L | 12131292..12131435 | 266..409 | 100 | <- | Minus |
2L | 12133094..12133367 | 1..265 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12130516..12130817 | 590..891 | 100 | <- | Minus |
2L | 12130886..12131065 | 410..589 | 100 | <- | Minus |
2L | 12131292..12131435 | 266..409 | 100 | <- | Minus |
2L | 12133094..12133367 | 1..265 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12130516..12130817 | 590..891 | 100 | <- | Minus |
2L | 12130886..12131065 | 410..589 | 100 | <- | Minus |
2L | 12131292..12131435 | 266..409 | 100 | <- | Minus |
2L | 12133094..12133367 | 1..265 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 12130886..12131065 | 410..589 | 100 | <- | Minus |
arm_2L | 12131292..12131435 | 266..409 | 100 | <- | Minus |
arm_2L | 12130516..12130817 | 590..891 | 100 | <- | Minus |
arm_2L | 12133094..12133367 | 1..265 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 12131292..12131435 | 266..409 | 100 | <- | Minus |
2L | 12130516..12130817 | 590..891 | 100 | <- | Minus |
2L | 12130886..12131065 | 410..589 | 100 | <- | Minus |
2L | 12133094..12133367 | 1..265 | 96 | Minus |
Translation from 0 to 810
> IP02076.hyp LSPPTSNRIMSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVA FSAESHKKFIDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASE CMQKVLIFKPEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQ GHWRLAVVYMVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLN FSQLSHRFARIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVA GILCGFIVYRRLQPANQKAIYF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-6-PB | 263 | CG17212-PB | 1..263 | 10..272 | 1409 | 100 | Plus |
rho-6-PC | 166 | CG17212-PC | 1..130 | 10..139 | 698 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 84..297 | 63..260 | 328 | 32.2 | Plus |
rho-PA | 355 | CG1004-PA | 84..297 | 63..260 | 328 | 32.2 | Plus |
ru-PA | 341 | CG1214-PA | 95..284 | 78..262 | 317 | 32.6 | Plus |
Translation from 1 to 810
> IP02076.pep LSPPTSNRIMSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVA FSAESHIDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASECMQ KVLIFKPEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHW RLAVVYMVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLNFSQ LSHRFARIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVAGIL CGFIVYRRLQPANQKAIYF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15679-PA | 260 | GF15679-PA | 1..260 | 10..269 | 935 | 71.7 | Plus |
Dana\rho-PA | 365 | GF24766-PA | 48..309 | 3..259 | 338 | 28.9 | Plus |
Dana\GF24760-PA | 352 | GF24760-PA | 104..295 | 75..259 | 296 | 31.2 | Plus |
Dana\GF21300-PA | 418 | GF21300-PA | 222..378 | 102..260 | 286 | 34 | Plus |
Dana\GF25034-PA | 485 | GF25034-PA | 222..431 | 78..260 | 273 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10271-PA | 263 | GG10271-PA | 1..262 | 10..268 | 1245 | 88.5 | Plus |
Dere\GG14792-PA | 353 | GG14792-PA | 100..297 | 78..259 | 328 | 33.3 | Plus |
Dere\GG18433-PA | 417 | GG18433-PA | 221..377 | 102..260 | 285 | 33.8 | Plus |
Dere\GG14787-PA | 349 | GG14787-PA | 103..293 | 75..260 | 274 | 31.9 | Plus |
Dere\GG14598-PA | 485 | GG14598-PA | 222..431 | 78..260 | 265 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11182-PA | 229 | GH11182-PA | 8..229 | 22..259 | 762 | 63 | Plus |
Dgri\GH16240-PA | 436 | GH16240-PA | 171..380 | 78..259 | 303 | 30 | Plus |
Dgri\GH15206-PA | 476 | GH15206-PA | 221..422 | 78..260 | 294 | 31.7 | Plus |
Dgri\GH16237-PA | 321 | GH16237-PA | 68..263 | 70..259 | 289 | 32.1 | Plus |
Dgri\GH24104-PA | 420 | GH24104-PA | 224..380 | 102..260 | 285 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-6-PB | 263 | CG17212-PB | 1..263 | 10..269 | 1379 | 98.9 | Plus |
rho-6-PC | 166 | CG17212-PC | 1..130 | 10..136 | 668 | 97.7 | Plus |
rho-PB | 355 | CG1004-PB | 84..297 | 60..257 | 328 | 32.2 | Plus |
rho-PA | 355 | CG1004-PA | 84..297 | 60..257 | 328 | 32.2 | Plus |
ru-PA | 341 | CG1214-PA | 95..284 | 75..259 | 317 | 32.6 | Plus |
rho-4-PB | 417 | CG1697-PB | 221..377 | 102..260 | 295 | 33.3 | Plus |
rho-4-PA | 417 | CG1697-PA | 221..377 | 102..260 | 295 | 33.3 | Plus |
stet-PA | 330 | CG33166-PA | 67..276 | 78..260 | 264 | 28.6 | Plus |
stet-PB | 485 | CG33166-PB | 222..431 | 78..260 | 264 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15831-PA | 242 | GI15831-PA | 4..235 | 20..259 | 740 | 62.1 | Plus |
Dmoj\GI16668-PA | 398 | GI16668-PA | 142..342 | 78..259 | 317 | 31.8 | Plus |
Dmoj\GI14374-PA | 420 | GI14374-PA | 224..380 | 102..260 | 288 | 34.4 | Plus |
Dmoj\GI16724-PA | 476 | GI16724-PA | 221..422 | 78..260 | 288 | 31.7 | Plus |
Dmoj\GI16665-PA | 311 | GI16665-PA | 65..253 | 76..259 | 247 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19515-PA | 204 | GL19515-PA | 20..203 | 28..268 | 588 | 56.4 | Plus |
Dper\GL22503-PA | 344 | GL22503-PA | 100..287 | 75..259 | 298 | 33 | Plus |
Dper\GL26733-PA | 417 | GL26733-PA | 221..377 | 102..260 | 291 | 34.4 | Plus |
Dper\GL22587-PA | 487 | GL22587-PA | 223..433 | 78..260 | 274 | 29.4 | Plus |
Dper\GL22508-PA | 342 | GL22508-PA | 138..284 | 100..257 | 199 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14394-PA | 252 | GA14394-PA | 20..252 | 28..269 | 855 | 71.5 | Plus |
Dpse\GA11431-PA | 336 | GA11431-PA | 55..279 | 38..259 | 307 | 30.7 | Plus |
Dpse\GA14244-PA | 417 | GA14244-PA | 221..377 | 102..260 | 290 | 34.4 | Plus |
Dpse\rho-PA | 365 | GA10027-PA | 138..309 | 100..259 | 287 | 32.6 | Plus |
Dpse\GA17336-PA | 487 | GA17336-PA | 223..433 | 78..260 | 270 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26295-PA | 139 | GM26295-PA | 1..139 | 10..141 | 622 | 87.1 | Plus |
Dsec\ve-PA | 364 | GM14413-PA | 93..308 | 60..259 | 329 | 31.9 | Plus |
Dsec\GM13096-PA | 417 | GM13096-PA | 221..377 | 102..260 | 282 | 33.1 | Plus |
Dsec\GM14406-PA | 344 | GM14406-PA | 98..287 | 75..259 | 275 | 32.6 | Plus |
Dsec\GM14213-PA | 485 | GM14213-PA | 222..431 | 78..260 | 268 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22127-PA | 267 | GD22127-PA | 1..267 | 10..269 | 1325 | 94.8 | Plus |
Dsim\GD13619-PA | 355 | GD13619-PA | 84..299 | 60..259 | 328 | 31.9 | Plus |
Dsim\GD17034-PA | 382 | GD17034-PA | 186..342 | 102..260 | 285 | 33.8 | Plus |
Dsim\GD13615-PA | 344 | GD13615-PA | 98..287 | 75..259 | 280 | 33.2 | Plus |
Dsim\GD13475-PA | 485 | GD13475-PA | 222..431 | 78..260 | 265 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10319-PA | 246 | GJ10319-PA | 6..234 | 20..260 | 753 | 62.7 | Plus |
Dvir\rho-PA | 401 | GJ12920-PA | 145..345 | 78..259 | 316 | 31.3 | Plus |
Dvir\GJ12468-PA | 476 | GJ12468-PA | 221..422 | 78..260 | 285 | 31.2 | Plus |
Dvir\GJ12917-PA | 314 | GJ12917-PA | 62..256 | 70..259 | 266 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14633-PA | 257 | GK14633-PA | 23..250 | 28..259 | 680 | 59.1 | Plus |
Dwil\GK16984-PA | 391 | GK16984-PA | 113..335 | 52..259 | 330 | 31.6 | Plus |
Dwil\GK17206-PA | 475 | GK17206-PA | 220..421 | 78..260 | 292 | 32.2 | Plus |
Dwil\GK15930-PA | 418 | GK15930-PA | 224..378 | 104..260 | 291 | 35.4 | Plus |
Dwil\GK16979-PA | 315 | GK16979-PA | 69..241 | 73..242 | 289 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12391-PA | 263 | GE12391-PA | 1..263 | 10..269 | 1199 | 89.4 | Plus |
Dyak\GE21154-PA | 355 | GE21154-PA | 102..299 | 78..259 | 325 | 33.3 | Plus |
Dyak\GE15951-PA | 417 | GE15951-PA | 221..377 | 102..260 | 286 | 33.8 | Plus |
Dyak\GE21150-PA | 343 | GE21150-PA | 79..286 | 65..259 | 282 | 32.2 | Plus |
Dyak\GE20958-PA | 485 | GE20958-PA | 222..431 | 78..260 | 265 | 28.6 | Plus |