Clone IP02107 Report

Search the DGRC for IP02107

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:21
Well:7
Vector:pOT2
Associated Gene/TranscriptOr49b-RA
Protein status:IP02107.pep: gold
Preliminary Size:1128
Sequenced Size:1759

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17584 2005-01-01 Successful iPCR screen
Or49b 2008-04-29 Release 5.5 accounting
Or49b 2008-08-15 Release 5.9 accounting
Or49b 2008-12-18 5.12 accounting

Clone Sequence Records

IP02107.complete Sequence

1759 bp (1759 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024438

> IP02107.complete
ATAGCGTTTTTTACTTTTATCTCCAATCGATAAGCATTATCTATGTGTAA
ATATAATTGAGTTTATATGCTAATTGGTCTATCTTTAATAAACATACAGC
CCAAGTGTAGTCGAGTTATCAGCGGAACGCATTAGCAAAATTAGCTTCCA
AGTTAAATGAAAAATATATTGAAGTGCTATAATCTGTATTAATGGCGACC
ACCTCTCCACCCCGTCCTTCACTCGTAATTCAAAAAGAAATCAATATGTG
GCCAATGAAATGCAGCAAATGAATGTTGCAATTCAATAGTAAAAATTTGT
GCAAAATCATTGGCAATTTAGGCAGAAATTGCACCCAAATGAGACCAGCT
GGGAGTCCATGCAAGTCGTGTCCTTTAAAAACTGCCCGACTAGTTTTTCC
CATAAGAATGCTATAAAAGGATGAAGCACAAACAGGATGGCTCAGAATTC
GATTAGAAAGCCAAGTTATAAGCCATGTTTGAAGACATTCAGCTAATCTA
CATGAATATCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACT
TGAGGCGTTATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAA
ATCGTCTACATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAA
CTCATATATGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCT
TGCTGGCGGATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAG
GCCTATTACGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATT
GGACCAGGTGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCT
TTGGCATGCTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGC
GAAAGAGTCCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGA
GAGTCCGTACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGA
TGGGCTGTTGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATA
ATGTTCGGCATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGT
GGCGCTTAAGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGG
AGATCATAGCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGAT
CACATAAACGAGCTGACCACCATGATGTTCCTATTCGAACTGATGGCCTT
TTCGGCGCTGCTCTGTGCGCTGCTCTTTATGCTGATTATCGTCAGCGGCA
CCAGTCAGCTGATAATTGTTTGCATGTACATTAACATGATTCTGGCCCAA
ATACTGGCCCTCTATTGGTATGCAAATGAGTTAAGGGAACAGAATCTGGC
GGTGGCCACCGCAGCCTACGAAACGGAGTGGTTCACCTTCGACGTTCCAC
TGCGCAAAAACATCCTGTTCATGATGATGAGGGCACAGCGGCCAGCTGCA
ATACTACTGGGCAATATACGCCCCATCACTTTGGAACTGTTCCAAAACCT
ACTGAACACAACCTATACATTTTTTACTGTTCTCAAGCGAGTCTACGGAT
GAACGAGCAAGGACCAAACTGGAATATTTTATGAAATAGCTTAAATACTG
CACATGCAAAGACTCTCACGATACGATTTACCATTAACTCTGGACACAAT
CGAGCACATTTTACAATTGAATAAATCATTAGTGAAAGGAAAAAAAAAAA
AAAAAAAAA

IP02107.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-RA 1744 Or49b-RA 1..1744 1..1744 8690 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8729965..8730871 1..907 4520 99.9 Plus
chr2R 21145070 chr2R 8730974..8731360 906..1292 1935 100 Plus
chr2R 21145070 chr2R 8731766..8732002 1501..1737 1170 99.6 Plus
chr2R 21145070 chr2R 8731421..8731630 1291..1500 1050 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:33:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12842665..12843571 1..907 4535 100 Plus
2R 25286936 2R 12843674..12844060 906..1292 1935 100 Plus
2R 25286936 2R 12844466..12844709 1501..1744 1190 99.2 Plus
2R 25286936 2R 12844121..12844330 1291..1500 1050 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12843864..12844770 1..907 4535 100 Plus
2R 25260384 2R 12844873..12845259 906..1292 1935 100 Plus
2R 25260384 2R 12845665..12845908 1501..1744 1190 99.1 Plus
2R 25260384 2R 12845320..12845529 1291..1500 1050 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:46:50 has no hits.

IP02107.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:47:39 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8729965..8730871 1..907 99 -> Plus
chr2R 8730976..8731358 908..1290 100 -> Plus
chr2R 8731421..8731630 1291..1500 100 -> Plus
chr2R 8731766..8732004 1501..1739 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:16:48 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 475..1602 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:36:34 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 475..1602 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:47:41 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 475..1602 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:11:15 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 475..1602 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:12 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 475..1602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:08:08 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1739 1..1739 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:36:34 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1739 1..1739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:41 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1739 1..1739 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:11:16 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1739 1..1739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:12 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1739 1..1739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:39 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12842665..12843571 1..907 100 -> Plus
2R 12843676..12844058 908..1290 100 -> Plus
2R 12844121..12844330 1291..1500 100 -> Plus
2R 12844466..12844704 1501..1739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:39 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12842665..12843571 1..907 100 -> Plus
2R 12843676..12844058 908..1290 100 -> Plus
2R 12844121..12844330 1291..1500 100 -> Plus
2R 12844466..12844704 1501..1739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:39 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12842665..12843571 1..907 100 -> Plus
2R 12843676..12844058 908..1290 100 -> Plus
2R 12844121..12844330 1291..1500 100 -> Plus
2R 12844466..12844704 1501..1739 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:41 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8730170..8731076 1..907 100 -> Plus
arm_2R 8731181..8731563 908..1290 100 -> Plus
arm_2R 8731626..8731835 1291..1500 100 -> Plus
arm_2R 8731971..8732209 1501..1739 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:01 Download gff for IP02107.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12845665..12845903 1501..1739 99   Plus
2R 12843864..12844770 1..907 100 -> Plus
2R 12844875..12845257 908..1290 100 -> Plus
2R 12845320..12845529 1291..1500 100 -> Plus

IP02107.pep Sequence

Translation from 474 to 1601

> IP02107.pep
MFEDIQLIYMNIKILRFWALLYDKNLRRYVCIGLASFHIFTQIVYMMSTN
EGLTGIIRNSYMLVLWINTVLRAYLLLADHDRYLALIQKLTEAYYDLLNL
NDSYISEILDQVNKVGKLMARGNLFFGMLTSMGFGLYPLSSSERVLPFGS
KIPGLNEYESPYYEMWYIFQMLITPMGCCMYIPYTSLIVGLIMFGIVRCK
ALQHRLRQVALKHPYGDRDPRELREEIIACIRYQQSIIEYMDHINELTTM
MFLFELMAFSALLCALLFMLIIVSGTSQLIIVCMYINMILAQILALYWYA
NELREQNLAVATAAYETEWFTFDVPLRKNILFMMMRAQRPAAILLGNIRP
ITLELFQNLLNTTYTFFTVLKRVYG*

IP02107.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12922-PA 375 GF12922-PA 1..375 1..375 1669 81.9 Plus
Dana\GF12923-PA 205 GF12923-PA 1..205 171..375 939 85.9 Plus
Dana\GF22708-PA 377 GF22708-PA 17..377 11..375 747 41.2 Plus
Dana\GF12239-PA 383 GF12239-PA 10..380 3..373 477 30.6 Plus
Dana\GF12856-PA 417 GF12856-PA 230..394 206..370 182 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20340-PA 375 GG20340-PA 1..375 1..375 1929 96.5 Plus
Dere\GG25332-PA 377 GG25332-PA 17..377 11..375 761 42.2 Plus
Dere\GG10763-PA 376 GG10763-PA 4..375 3..375 485 30.2 Plus
Dere\GG13978-PA 404 GG13978-PA 241..402 213..375 199 26.2 Plus
Dere\GG11031-PA 412 GG11031-PA 184..410 143..374 165 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21764-PA 371 GH21764-PA 1..371 1..375 1384 68.4 Plus
Dgri\GH13264-PA 375 GH13264-PA 10..375 4..375 749 40.6 Plus
Dgri\GH20371-PA 377 GH20371-PA 7..372 4..371 349 26.5 Plus
Dgri\GH20697-PA 404 GH20697-PA 218..401 189..373 157 23.2 Plus
Dgri\GH20696-PA 404 GH20696-PA 218..403 189..375 155 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-PA 375 CG17584-PA 1..375 1..375 1939 100 Plus
Or30a-PA 377 CG13106-PA 18..377 12..375 764 42.2 Plus
Or43a-PA 376 CG1854-PA 4..375 3..375 496 30.2 Plus
Or67c-PA 404 CG14156-PA 241..401 213..374 209 26.5 Plus
Or46a-PA 381 CG33478-PA 38..379 12..373 192 23 Plus
Or85d-PA 412 CG11742-PA 184..410 143..374 185 25.3 Plus
Or92a-PA 408 CG17916-PA 48..406 14..374 178 20.8 Plus
Or2a-PA 397 CG3206-PA 214..395 200..372 176 22 Plus
Or85c-PA 389 CG17911-PA 141..387 126..374 172 22.7 Plus
Or22c-PA 402 CG15377-PA 87..399 70..371 172 22.2 Plus
Or49a-PA 396 CG13158-PA 247..392 227..372 160 25.3 Plus
Or23a-PA 379 CG9880-PA 173..371 162..370 157 23.2 Plus
Or85f-PA 392 CG16755-PA 184..390 158..373 155 21.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19311-PA 371 GI19311-PA 1..371 1..375 1379 69.3 Plus
Dmoj\GI17462-PA 370 GI17462-PA 5..370 4..375 793 42.2 Plus
Dmoj\GI20046-PA 374 GI20046-PA 1..371 1..373 417 27.9 Plus
Dmoj\GI14807-PA 383 GI14807-PA 118..378 105..372 206 24.4 Plus
Dmoj\GI19057-PA 410 GI19057-PA 156..401 128..373 197 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17016-PA 375 GL17016-PA 1..375 1..375 1610 78.9 Plus
Dper\GL26244-PA 377 GL26244-PA 10..377 4..375 749 40.6 Plus
Dper\GL10945-PA 368 GL10945-PA 6..365 3..373 397 27.2 Plus
Dper\GL11724-PA 406 GL11724-PA 242..404 212..375 185 26.2 Plus
Dper\GL11094-PA 399 GL11094-PA 223..398 199..375 177 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Or49b-PA 375 GA14566-PA 1..375 1..375 1605 78.4 Plus
Dpse\Or30a-PA 377 GA12048-PA 10..377 4..375 749 40.6 Plus
Dpse\Or43a-PA 378 GA14981-PA 6..375 3..373 443 27.8 Plus
Dpse\OrN-PA 395 GA28396-PA 244..392 227..375 189 24.2 Plus
Dpse\Or67c-PA 406 GA12792-PA 242..404 212..375 186 26.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21427-PA 375 GM21427-PA 1..375 1..375 1946 97.9 Plus
Dsec\GM17404-PA 392 GM17404-PA 32..392 11..375 755 41.7 Plus
Dsec\GM20811-PA 376 GM20811-PA 4..375 3..375 474 29.8 Plus
Dsec\GM24814-PA 404 GM24814-PA 241..402 213..375 200 27 Plus
Dsec\GM23739-PA 412 GM23739-PA 184..410 143..374 171 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10923-PA 375 GD10923-PA 1..375 1..375 1958 98.7 Plus
Dsim\GD23587-PA 377 GD23587-PA 17..377 11..375 753 41.7 Plus
Dsim\GD10268-PA 376 GD10268-PA 4..375 3..375 480 29.8 Plus
Dsim\GD12865-PA 404 GD12865-PA 241..402 213..375 198 26.4 Plus
Dsim\GD18548-PA 412 GD18548-PA 184..410 143..374 172 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22189-PA 371 GJ22189-PA 1..371 1..375 1344 66.7 Plus
Dvir\GJ14423-PA 376 GJ14423-PA 17..376 10..375 790 42.6 Plus
Dvir\GJ21288-PA 377 GJ21288-PA 6..374 3..373 397 27.3 Plus
Dvir\GJ20026-PA 404 GJ20026-PA 228..403 199..375 177 26.6 Plus
Dvir\GJ24009-PA 419 GJ24009-PA 191..417 143..374 173 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15588-PA 363 GK15588-PA 1..363 1..375 1471 70.4 Plus
Dwil\GK15067-PA 379 GK15067-PA 17..379 11..375 757 42 Plus
Dwil\GK21525-PA 376 GK21525-PA 5..373 3..373 439 28.3 Plus
Dwil\GK24073-PA 407 GK24073-PA 240..404 212..374 194 28.1 Plus
Dwil\GK22465-PA 401 GK22465-PA 171..400 139..374 155 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12498-PA 375 GE12498-PA 1..375 1..375 1936 96.8 Plus
Dyak\GE18826-PA 392 GE18826-PA 32..392 11..375 757 42.3 Plus
Dyak\GE24158-PA 376 GE24158-PA 4..375 3..375 484 30.5 Plus
Dyak\GE20276-PA 404 GE20276-PA 240..402 212..375 200 26.2 Plus
Dyak\GE25883-PA 412 GE25883-PA 231..410 188..374 162 24.6 Plus

IP02107.hyp Sequence

Translation from 474 to 1601

> IP02107.hyp
MFEDIQLIYMNIKILRFWALLYDKNLRRYVCIGLASFHIFTQIVYMMSTN
EGLTGIIRNSYMLVLWINTVLRAYLLLADHDRYLALIQKLTEAYYDLLNL
NDSYISEILDQVNKVGKLMARGNLFFGMLTSMGFGLYPLSSSERVLPFGS
KIPGLNEYESPYYEMWYIFQMLITPMGCCMYIPYTSLIVGLIMFGIVRCK
ALQHRLRQVALKHPYGDRDPRELREEIIACIRYQQSIIEYMDHINELTTM
MFLFELMAFSALLCALLFMLIIVSGTSQLIIVCMYINMILAQILALYWYA
NELREQNLAVATAAYETEWFTFDVPLRKNILFMMMRAQRPAAILLGNIRP
ITLELFQNLLNTTYTFFTVLKRVYG*

IP02107.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-PA 375 CG17584-PA 1..375 1..375 1939 100 Plus
Or30a-PA 377 CG13106-PA 18..377 12..375 764 42.2 Plus
Or43a-PA 376 CG1854-PA 4..375 3..375 496 30.2 Plus
Or67c-PA 404 CG14156-PA 241..401 213..374 209 26.5 Plus
Or46a-PA 381 CG33478-PA 38..379 12..373 192 23 Plus