Clone IP02207 Report

Search the DGRC for IP02207

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:22
Well:7
Vector:pOT2
Associated Gene/TranscriptOr45a-RA
Protein status:IP02207.pep: gold
Preliminary Size:1182
Sequenced Size:3459

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1978 2005-01-01 Successful iPCR screen

Clone Sequence Records

IP02207.complete Sequence

3459 bp assembled on 2010-04-19

GenBank Submission: BT099758.2

> IP02207.complete
TTTTTTTTTTTTTTTGCCCCCAGTGGCTGCTATAAAAGTTGGTGCAACAA
CGAAATCCGGTTGAAAGACCAACATGGACGCCAGCTACTTTGCCGTCCAG
AGAAGAGCTCTGGAAATAGTTGGATTCGATCCCAGTACTCCGCAACTGAG
TCTGAAACATCCCATCTGGGCCGGGATTCTCATCCTGTCCTTGATCTCTC
ACAACTGGCCCATGGTAGTCTATGCCCTGCAGGATCTCTCCGACTTGACC
CGTCTGACGGACAACTTTGCGGTGTTTATGCAAGGATCACAGAGCACCTT
CAAGTTCCTGGTCATGATGGCGAAACGAAGGCGCATTGGATCGTTGATTC
ACCGTTTGCATAAGCTAAACCAGGCGGCCAGTGCCACGCCCAATCACCTG
GAGAAGATCGAGAGGGAAAACCAACTGGATAGGTATGTCGCCAGGTCCTT
TAGAAATGCCGCCTACGGAGTGATTTGTGCCTCGGCCATAGCGCCCATGT
TGCTTGGCCTGTGGGGATATGTGGAGACGGGTGTATTTACCCCGACCACA
CCCATGGAGTTCAACTTCTGGCTGGACGAGCGAAAGCCTCACTTTTATTG
GCCCATCTACGTTTGGGGCGTACTGGGCGTGGCAGCTGCCGCCTGGTTGG
CCATTGCAACGGACACCCTGTTCTCCTGGCTGACTCACAATGTGGTGATT
CAGTTCCAACTACTGGAGCTTGTTCTCGAAGAGAAGGATCTGAATGGCGG
AGACTCTCGCCTGACCGGGTTTGTTAGTCGTCATCGTATAGCTCTGGATT
TGGCCAAGGAACTAAGTTCGATTTTCGGGGAGATCGTCTTTGTGAAATAC
ATGCTCAGTTACCTGCAACTCTGCATGTTGGCCTTTCGCTTCAGCCGCAG
TGGCTGGAGTGCCCAGGTGCCATTTAGAGCCACCTTCCTAGTGGCCATCA
TCATCCAACTGAGTTCGTATTGCTATGGAGGCGAGTATATAAAGCAGCAA
AGTTTGGCCATCGCACAAGCCGTTTATGGTCAAATCAATTGGCCAGAAAT
GACGCCAAAGAAAAGAAGACTCTGGCAAATGGTGATCATGAGGGCGCAGC
GACCGGCTAAGATTTTTGGATTCATGTTCGTTGTGGACTTGCCACTGCTG
CTTTGGGTCATCAGAACTGCGGGCTCATTTCTGGCCATGCTTAGGACTTT
CGAGCGTTAGCCCATCAAATCGAAGCTTGAGAATAGTTACCTCTTAATGA
ACAAAAATGATTATAATTTCTTAATCAATCAATAATCTTTAATAGTCGAG
TACATTTATTTGGAAATATTCATGGGCAAGCGATCCAAACATCCACAACC
CAACTCCAATCAGTTGCCATTTGGACGAGCATGTTTTTGACGGGCTCAGC
TGCCCCGAAGGGATCTCATGCCCCAGGTTGATGCCACTGCAGGCAGATGG
AGGAGCATATGAAATTCATGAGGGCATTCCACAAAGGCAGCTAGCGAAGC
CAGCTCATGCGTGTGGCCATGATGTCAGTCGTGTGTGCATATGGGTACTC
GTATGTATTGTATGTATATAGATGTATACACCAGGTAGTCGGAATTTGTT
AGTATGAAAGTACGAAAGTATGCAACATCAGCAGCATCGTTCAGGTGGGG
AACAAGTTGCTGAAAAATAGCTACTCAAACTATGTGCACCATGCTGCTTG
CCAGCCAATGGCCTCGGGCTCCTTTTTCGACTCAGCCCGGGTCTTGAGCT
AGTTTCGGGGCTTCGGGATCAGGATCAGGTGGAATGCGGACCTAAGAACC
CTGCCCTTATCCTTCGTGCCTTGCGGAATGTTGCCTGCTACGGAATTTCT
GGCTTGATGTTGCCGAGATTCGAATTCAGTCGGAGGCTAAGTCGCTTGAA
CGGAATTTGTTTTATTAAATTTTACAACTCGGTATTTTGCACATGCAAAA
TGGACTCAGTATTTCGGACTCCGTGCACCACCGTTTTACCAAAAAGCTGT
GACAAATTGTGCGGGCGTGGAAGCCAGGCACCTCGGATTATGTTACAAAT
TACGACAGCGCTATTGCGGGCATAATTAATTTTTGTCTCTGACATTTGAT
TTATTGGTCTGCGTTGGTCAGCATCTTTGGCTTGACTTCGAAAAAACAAA
TGAGCAGCGATTAATAAGCGCGAATCGCTCCTGGCCATTACGCACCTGCG
GCACAAAGCCAACAAAATTCGAGCATCAACCTGCCACAGCTAGCTGGGTT
TGCTGGGCGGTATAACTTTACAGCAAATTGTGGCCAAGATAAGAGCGGAT
GGCCAAGAGCCACAAGCTGAAAATAGTGGTGAAAAAAATCACCATTTTAT
GTGTATTAAAAATGTGAACAAAAACGAACAGGAGCGAGCACAGATTTTGT
TTGCGGTTCGTTGAGCACACAATAATTCCATCAGCATCAGTGGCAGTAGG
AAAAGTGGGCGTGGCAGGCGTGTGTGGGCGGTGGGGTAGAGATAAAAGTG
CTGGCAGCACTTTCGCTGCATTGCTTTTTTTGTTTTTTTGCAGTTGTTGC
GGTGTATTGTGTGGGCAGTGCCACGAGGCGAATGGTTAATAATCGAACAA
AAAGGTCCTTAAAGCTGTCGCGCAGTGAGCAAACGTTTATGCAAAGTAAA
TTGATATGCAAACTGCAAATTTCAATGGCAATTCAAACTTAAATGTCCTA
ATGCAGTTTTATCTTTGTAAAACAAAATGGTGGCCAGCTGGTAGTTTCCC
GCAAGCATTACCCCAGGGCTTATGGTTTGCATTTAACCAACAAAAAATCT
AACCTAAAGTTTTACAACAAAATTGATTTTTCAATTTCAAAATGAATTGC
CTGAAATGAAGAAAACAAAAACTATCAGTATTTTAATGCGAAAATTGAAA
TGCCAAGCTTAAATCAAGTTCGCAATGCGGAAAAGTGGCCAAACACTTAT
TCAATTCACCCGAAGTGGAAATTCAAATTTTCGAACACAAATGCTAATTC
AAATTAAATGGAAAAACCCAGCCGTTTTCACGGTAATTCCACCTCTTTGG
CCACCGGAAAATAGGAAGCACAAAAAATGTCCCACTTTAATCGGGCTTGT
GTTTGCCAAAGCTATATTTTCATCTGTATATATGTACAATATAAATGTAT
AACATATATTTTTCGGTTAAGCATACAAGGCGGCTGTGCAGGGCCTTGAT
GAAACTTTTCTAATTAAAATTGTGCGGCTTGTTGAAAGGTTTTTCCAACG
GCGAGGGGCCGGCGAAGGGCGGGCGCGGAGATAGCCAGTTTTAATAGAAA
TTACATTAATTAATATTTAAAATATGCTTAAATACACATTCCTATGCATT
AATTAATACGGGCTGGCGGCACACATACAGCGAGTAAACAATGAAACGTG
ACTGGAACTAACAACGAATTGCGCCATAAGCCAAACGTTGGCAGGCAGGC
ACTCCAACT

IP02207.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-RA 1137 Or45a-RA 1..1137 74..1210 5685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5234053..5236366 1156..3459 11070 99 Plus
chr2R 21145070 chr2R 5232844..5234001 1..1158 5700 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:33:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9346558..9348863 1156..3459 11465 99.9 Plus
2R 25286936 2R 9345349..9346506 1..1158 5775 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9347757..9350062 1156..3459 11475 99.9 Plus
2R 25260384 2R 9346548..9347705 1..1158 5775 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 16:27:46 has no hits.

IP02207.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:28:36 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5232859..5233999 16..1156 99 -> Plus
chr2R 5234054..5236366 1157..3459 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-19 15:46:22 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:03 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:44 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:17 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:46:22 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:03 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1137 74..1210 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:44 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 16..3461 16..3459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:17 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 16..3461 16..3459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:36 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9345364..9346504 16..1156 100 -> Plus
2R 9346559..9348863 1157..3459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:36 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9345364..9346504 16..1156 100 -> Plus
2R 9346559..9348863 1157..3459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:36 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9345364..9346504 16..1156 100 -> Plus
2R 9346559..9348863 1157..3459 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:44 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5232869..5234009 16..1156 100 -> Plus
arm_2R 5234064..5236368 1157..3459 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:47:33 Download gff for IP02207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9346563..9347703 16..1156 100 -> Plus
2R 9347758..9350062 1157..3459 99   Plus

IP02207.pep Sequence

Translation from 73 to 1209

> IP02207.pep
MDASYFAVQRRALEIVGFDPSTPQLSLKHPIWAGILILSLISHNWPMVVY
ALQDLSDLTRLTDNFAVFMQGSQSTFKFLVMMAKRRRIGSLIHRLHKLNQ
AASATPNHLEKIERENQLDRYVARSFRNAAYGVICASAIAPMLLGLWGYV
ETGVFTPTTPMEFNFWLDERKPHFYWPIYVWGVLGVAAAAWLAIATDTLF
SWLTHNVVIQFQLLELVLEEKDLNGGDSRLTGFVSRHRIALDLAKELSSI
FGEIVFVKYMLSYLQLCMLAFRFSRSGWSAQVPFRATFLVAIIIQLSSYC
YGGEYIKQQSLAIAQAVYGQINWPEMTPKKRRLWQMVIMRAQRPAKIFGF
MFVVDLPLLLWVIRTAGSFLAMLRTFER*

IP02207.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11820-PA 379 GF11820-PA 1..377 1..376 1464 74 Plus
Dana\GF19558-PA 406 GF19558-PA 67..405 46..377 294 25.2 Plus
Dana\GF18578-PA 380 GF18578-PA 5..378 4..375 290 24.7 Plus
Dana\GF12536-PA 388 GF12536-PA 6..388 4..377 269 24 Plus
Dana\GF21445-PA 392 GF21445-PA 21..382 10..373 251 22 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23433-PA 382 GG23433-PA 1..379 1..378 1684 84.2 Plus
Dere\GG11597-PA 384 GG11597-PA 30..382 28..375 314 24.2 Plus
Dere\GG18920-PA 392 GG18920-PA 19..391 8..377 314 24.3 Plus
Dere\GG20181-PA 385 GG20181-PA 1..385 1..377 289 24.9 Plus
Dere\GG12241-PA 384 GG12241-PA 29..384 25..377 258 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19067-PA 382 GH19067-PA 5..382 6..377 227 23.3 Plus
Dgri\GH12715-PA 385 GH12715-PA 47..382 46..376 210 22.3 Plus
Dgri\GH10871-PA 395 GH10871-PA 12..394 4..376 195 22.4 Plus
Dgri\GH16554-PA 404 GH16554-PA 92..399 74..375 173 22.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-PA 378 CG1978-PA 1..378 1..378 1963 100 Plus
Or9a-PA 392 CG15302-PA 19..390 8..376 313 24.4 Plus
Or82a-PA 385 CG31519-PA 29..385 25..377 293 27 Plus
Or47a-PA 385 CG13225-PA 3..384 4..376 272 23.4 Plus
Or1a-PA 392 CG17885-PA 15..382 9..373 254 23.1 Plus
Or98b-PB 383 CG1867-PB 33..381 32..375 253 22.2 Plus
Or22c-PA 402 CG15377-PA 255..401 229..376 186 28.4 Plus
Or67c-PA 404 CG14156-PA 195..399 175..375 179 24.5 Plus
Or92a-PA 408 CG17916-PA 200..404 175..375 166 27.1 Plus
Or94b-PA 383 CG6679-PA 86..378 77..373 163 24 Plus
Or10a-PB 406 CG17867-PB 14..406 1..377 158 19.5 Plus
Or94a-PA 387 CG17241-PA 171..382 166..373 156 26.4 Plus
Or63a-PA 420 CG9969-PA 28..415 16..374 156 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15391-PA 384 GI15391-PA 1..383 1..377 310 24.6 Plus
Dmoj\GI14836-PA 391 GI14836-PA 14..386 8..375 231 22.8 Plus
Dmoj\GI10849-PA 381 GI10849-PA 2..381 3..377 209 22.4 Plus
Dmoj\GI18246-PA 395 GI18246-PA 56..394 49..376 181 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17585-PA 390 GL17585-PA 10..390 1..378 1487 71.7 Plus
Dper\GL24444-PA 386 GL24444-PA 51..384 48..375 298 24.6 Plus
Dper\GL14885-PA 392 GL14885-PA 12..391 8..377 289 23.4 Plus
Dper\GL17719-PA 388 GL17719-PA 6..388 4..377 255 23.1 Plus
Dper\GL20372-PA 388 GL20372-PA 15..376 9..374 203 22.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Or45a-PB 381 GA15169-PB 1..381 1..378 1488 71.9 Plus
Dpse\Or98b-PA 386 GA15044-PA 51..384 48..375 305 25.1 Plus
Dpse\Or9a-PA 392 GA13635-PA 12..391 8..377 287 23.4 Plus
Dpse\Or47a-PA 388 GA12137-PA 6..388 4..377 254 22.9 Plus
Dpse\Or1a-PA 388 GA14708-PA 15..376 9..374 203 22.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21116-PA 378 GM21116-PA 1..378 1..378 1864 94.4 Plus
Dsec\GM11312-PA 208 GM11312-PA 2..207 174..377 267 29 Plus
Dsec\GM21269-PA 385 GM21269-PA 3..385 4..377 263 24.1 Plus
Dsec\GM19055-PA 392 GM19055-PA 15..383 9..374 251 23.1 Plus
Dsec\GM16381-PA 213 GM16381-PA 10..211 179..375 224 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10650-PA 378 GD10650-PA 1..378 1..378 1873 95.2 Plus
Dsim\GD24550-PA 310 GD24550-PA 6..309 77..377 300 26.2 Plus
Dsim\GD21372-PA 369 GD21372-PA 30..367 28..375 264 23.5 Plus
Dsim\GD16499-PA 392 GD16499-PA 15..383 9..374 240 22.8 Plus
Dsim\GD19712-PA 384 GD19712-PA 29..384 25..377 229 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14787-PA 388 GJ14787-PA 1..383 1..377 346 25.8 Plus
Dvir\GJ15072-PA 383 GJ15072-PA 4..380 1..378 336 26.9 Plus
Dvir\GJ14456-PA 382 GJ14456-PA 5..382 6..377 207 24.1 Plus
Dvir\GJ19501-PA 391 GJ19501-PA 62..386 56..375 207 24.2 Plus
Dvir\GJ23238-PA 396 GJ23238-PA 162..392 149..375 185 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20775-PA 378 GK20775-PA 1..378 1..378 1133 58.7 Plus
Dwil\GK19770-PA 384 GK19770-PA 1..383 1..377 343 25.3 Plus
Dwil\GK12093-PA 384 GK12093-PA 6..382 5..375 342 24.2 Plus
Dwil\GK12193-PA 383 GK12193-PA 7..381 5..375 339 27.4 Plus
Dwil\GK24993-PA 396 GK24993-PA 15..386 9..373 236 20.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19271-PA 381 GE19271-PA 1..378 1..378 1837 92.6 Plus
Dyak\GE15392-PA 396 GE15392-PA 23..395 8..377 316 24.3 Plus
Dyak\GE12868-PA 385 GE12868-PA 1..385 1..377 280 24.2 Plus
Dyak\GE23786-PA 384 GE23786-PA 25..382 23..375 269 22.8 Plus
Dyak\GE25401-PA 384 GE25401-PA 5..384 6..377 258 25.9 Plus

IP02207.hyp Sequence

Translation from 73 to 1209

> IP02207.hyp
MDASYFAVQRRALEIVGFDPSTPQLSLKHPIWAGILILSLISHNWPMVVY
ALQDLSDLTRLTDNFAVFMQGSQSTFKFLVMMAKRRRIGSLIHRLHKLNQ
AASATPNHLEKIERENQLDRYVARSFRNAAYGVICASAIAPMLLGLWGYV
ETGVFTPTTPMEFNFWLDERKPHFYWPIYVWGVLGVAAAAWLAIATDTLF
SWLTHNVVIQFQLLELVLEEKDLNGGDSRLTGFVSRHRIALDLAKELSSI
FGEIVFVKYMLSYLQLCMLAFRFSRSGWSAQVPFRATFLVAIIIQLSSYC
YGGEYIKQQSLAIAQAVYGQINWPEMTPKKRRLWQMVIMRAQRPAKIFGF
MFVVDLPLLLWVIRTAGSFLAMLRTFER*

IP02207.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-PA 378 CG1978-PA 1..378 1..378 1963 100 Plus
Or9a-PA 392 CG15302-PA 19..390 8..376 313 24.4 Plus
Or82a-PA 385 CG31519-PA 29..385 25..377 293 27 Plus
Or47a-PA 385 CG13225-PA 3..384 4..376 272 23.4 Plus
Or1a-PA 392 CG17885-PA 15..382 9..373 254 23.1 Plus