Clone IP02236 Report

Search the DGRC for IP02236

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:22
Well:36
Vector:pOT2
Associated Gene/TranscriptObp50b-RB
Protein status:IP02236.pep: gold
Preliminary Size:558
Sequenced Size:1672

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30072 2005-01-01 Successful iPCR screen
Obp50c 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

IP02236.complete Sequence

1672 bp assembled on 2009-06-15

GenBank Submission: BT088819.1

> IP02236.complete
AAATTGTTTTTTCAAAATTTTACGTTTAATTCTTGCCCTGCTTTATAGGG
AGGCAATTTCAAAATGTCTTCGGTGCTGCATCTACTGGGTTTCTTGTGGC
TTCCTTTGCTGGTTTATAGTGTATCCAATGATATGGGAGGATTGCAGAAA
TGTACAGAACTTCTAAATACACATAAGTTGGTCTACTGTTGTGGCAAATC
CTTTCTGGATAAGTTCCCCTTTGTTGGCAGCAATTGCACACCGTTTTGGG
ATGACTATGGTCCTTGCCGCTATGAATGTCTGTATAGGCACTGGGACCTC
CTTGATCAGGATAACAAGATCAAAAAACCGGAGCTCTACCTGATGATCAC
CAGCCTCTACAGCCCCTTGAATGGTTATGATAAATACGGGGCCGCTTTTA
AGGCAGCTCACGAGACTTGCGAAGCTCTGGGCTCCAGACACGCCGACTTT
CTGCTGCTCTACTCCAACCAGGTGGCGGATAAGATGGGCATGGCTTCCTC
AACCTGTCTGCCATATGCCATGCTTCATGCACAGTGTACCATGGTATACC
TAACCGCCAACTGTCCCCGTGAGAACTGGATAGATGATCCGAAGTGCAAT
AGTCTGCAAAAATTGCTGTCAAGTTGCACAAAGAAATTGGACGAAAAGAC
GAATGCACTTAAGGGAAAGGATGAGGAACTAACGGACAACGGGTGTGGGC
ATATAGATTCAGAAGGATCCAATCTGCTCATGGCCTGTTTTCTCACACTG
ATGATCGCCAAGTTCATATCGGATCATTAATTAGGGATTACCTAGATTTG
TTTGTCTGGTTAAAATGATTGCATTTAAGCCGATAAGCTTGTCTAATTGC
AATTGTCTGGCTTATGCCGAGCCCCCAATCGGAATTTTGTTTGGACTTTG
ACCCGCTATGAGTCCATCCCGATGACTGCACATTTTCGCTCACGAGACCG
TCGTTTAAAATGTGTTTTTGCTGTGCTCGATTAATTAGTGGATCGTCACG
GAACTGGAGTTATAAAGTAAGCCGACGGTGCCAGACGAAGCTCAGACTGA
CTAAAAAAATGGCCCGGCATATAGCCCTGCTGATCTGCTCATTGCTAGCG
ATGGCTGGCTGTGATCCAATCGATGTGGACTGTACTCGCAGACAGGATTT
CAATATTGTCAAGGACTGCTGTGTCTATCCCACATTTAGGTTTGACCAGT
TCAAAAGCCAGTGTGGTAAATATATGCCAGTTGGTGCTCCCAGAATTTCA
CCCTGCCTCTATGAATGCATTTTCAATAAGACCAACACAGTTGTGGACGG
AGCTATTCATCCTGACAATGCCCGACTCATGCTGGAGAAGCTTTTCGGTA
ATCAGGACTTTGAAGAAGCCTATTTCAATGGTTTAATGGGCTGTTCGGAT
TCTGTGCAAGAGATGATTAGCAACAGGAGGTCACGGCCCCAAAGAAAAAC
AGAACAATGCTCTCCATTCTCACTTTTCTATGGAATTTGTGCCCAGAGAT
ATGTCTTCAACCATTGTCCATCATCCAGCTGGTCCGGCACTGAATCTTGC
GAAATGGCCCGATTGCAGAACATGAACTGTTCGAAACCATCACGTGGTTC
TAGTCATCGCCTTTAAAGGCATATAATAAAATAATATATGAACATTGTAA
AAAAAAAAAAAAAAAAAAAAAA

IP02236.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50c-RA 1234 Obp50c-RA 1..1234 415..1648 6170 100 Plus
Obp50b-RA 940 Obp50b-RA 5..940 1..936 4680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10258808..10259697 265..1154 4450 100 Plus
chr2R 21145070 chr2R 10259916..10260310 1254..1648 1975 100 Plus
chr2R 21145070 chr2R 10258490..10258753 1..264 1320 100 Plus
chr2R 21145070 chr2R 10259761..10259859 1155..1253 480 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:33:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14371504..14372393 265..1154 4450 100 Plus
2R 25286936 2R 14372612..14373007 1254..1649 1980 100 Plus
2R 25286936 2R 14371186..14371449 1..264 1320 100 Plus
2R 25286936 2R 14372457..14372555 1155..1253 495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14372703..14373592 265..1154 4450 100 Plus
2R 25260384 2R 14373811..14374206 1254..1649 1980 100 Plus
2R 25260384 2R 14372385..14372648 1..264 1320 100 Plus
2R 25260384 2R 14373656..14373754 1155..1253 495 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:58:06 has no hits.

IP02236.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:59:23 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10259761..10259859 1155..1253 98 -> Plus
chr2R 10259916..10260310 1254..1648 100   Plus
chr2R 10258490..10258753 1..264 100 -> Plus
chr2R 10258808..10259697 265..1154 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:32 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50b-RA 1..717 64..780 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:54 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50b-RB 1..717 64..780 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:55:05 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50b-RB 1..717 64..780 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:51 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50b-RB 1..717 64..780 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-15 14:16:40 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50c-RA 1..1234 415..1648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:54 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50c-RB 1..1648 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:55:05 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50c-RB 1..1648 1..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:51 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50c-RC 1..1648 1..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:23 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14371186..14371449 1..264 100 -> Plus
2R 14371504..14372393 265..1154 100 -> Plus
2R 14372457..14372555 1155..1253 100 -> Plus
2R 14372612..14373006 1254..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:23 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14371186..14371449 1..264 100 -> Plus
2R 14371504..14372393 265..1154 100 -> Plus
2R 14372457..14372555 1155..1253 100 -> Plus
2R 14372612..14373006 1254..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:23 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14371186..14371449 1..264 100 -> Plus
2R 14371504..14372393 265..1154 100 -> Plus
2R 14372457..14372555 1155..1253 100 -> Plus
2R 14372612..14373006 1254..1648 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:55:05 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10258691..10258954 1..264 100 -> Plus
arm_2R 10259009..10259898 265..1154 100 -> Plus
arm_2R 10259962..10260060 1155..1253 100 -> Plus
arm_2R 10260117..10260511 1254..1648 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:23:25 Download gff for IP02236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14373811..14374205 1254..1648 100   Plus
2R 14372385..14372648 1..264 100 -> Plus
2R 14372703..14373592 265..1154 100 -> Plus
2R 14373656..14373754 1155..1253 100 -> Plus

IP02236.pep Sequence

Translation from 63 to 779

> IP02236.pep
MSSVLHLLGFLWLPLLVYSVSNDMGGLQKCTELLNTHKLVYCCGKSFLDK
FPFVGSNCTPFWDDYGPCRYECLYRHWDLLDQDNKIKKPELYLMITSLYS
PLNGYDKYGAAFKAAHETCEALGSRHADFLLLYSNQVADKMGMASSTCLP
YAMLHAQCTMVYLTANCPRENWIDDPKCNSLQKLLSSCTKKLDEKTNALK
GKDEELTDNGCGHIDSEGSNLLMACFLTLMIAKFISDH*

IP02236.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13500-PA 235 GF13500-PA 4..211 3..212 678 56.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20449-PA 237 GG20449-PA 1..236 1..236 1004 84.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50b-PB 238 CG30073-PB 1..238 1..238 1307 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10689-PA 424 GL10689-PA 2..215 3..210 480 44.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp50b-PA 245 GA24449-PA 2..215 3..210 485 44.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21536-PA 238 GM21536-PA 1..238 1..238 1134 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Obp50b-PA 218 GD11045-PA 17..218 17..228 977 86.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21473-PA 238 GK21473-PA 7..191 6..192 435 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13580-PA 237 GE13580-PA 1..236 1..236 933 80.9 Plus

IP02236.hyp Sequence

Translation from 63 to 779

> IP02236.hyp
MSSVLHLLGFLWLPLLVYSVSNDMGGLQKCTELLNTHKLVYCCGKSFLDK
FPFVGSNCTPFWDDYGPCRYECLYRHWDLLDQDNKIKKPELYLMITSLYS
PLNGYDKYGAAFKAAHETCEALGSRHADFLLLYSNQVADKMGMASSTCLP
YAMLHAQCTMVYLTANCPRENWIDDPKCNSLQKLLSSCTKKLDEKTNALK
GKDEELTDNGCGHIDSEGSNLLMACFLTLMIAKFISDH*

IP02236.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50b-PB 238 CG30073-PB 1..238 1..238 1307 100 Plus