Clone IP02353 Report

Search the DGRC for IP02353

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:23
Well:53
Vector:pOT2
Associated Gene/TranscriptMED7-RA
Protein status:IP02353.pep: gold
Preliminary Size:678
Sequenced Size:924

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31390 2005-01-01 Successful iPCR screen
MED7 2008-04-29 Release 5.5 accounting
MED7 2008-08-15 Release 5.9 accounting
MED7 2008-12-18 5.12 accounting

Clone Sequence Records

IP02353.complete Sequence

924 bp (924 high quality bases) assembled on 2005-03-01

GenBank Submission: BT023304

> IP02353.complete
CATCACTATCGTGAGTGATTCGCCTGTCTCAGGTGCCATCACTTCTTCAA
AACAAAAATCATTTATTATTTTTGTATTTCCGCACTTGTTAATCTCATAA
TGTCCAACCAGGAGACCCAGGTTTCCAGCCTGCCGATGCCGCCGGAGCGG
TACATCGCCAATTACACGGACGAGAATATCCGCCGCAACCGAGCGCCACG
CCCACCGCCGCCGCCGGCGCAGCACGAAGTCTATAGCATGTTTGGCATCC
AGTACAACAACGACGAGATGATCCGCAGCTTGGAGTCCCAGAATATTAAG
CGACTGATCCCCATCCATTTCGATCGGCGCAAGGAGCTCAAGAAGCTTAA
CCACTCCCTCTTGGTCAACTTCCTAGATCTCATTGACTTTCTTATCCTGA
ATCCTGACAGCCCGCGGCGCACGGAAAAGATTGACGATATCAGTCTGCTG
TTCGTCAACATGCATCACCTCCTCAATGAATTTCGCCCACATCAGGCGAG
GGAAACGCTGCGCGTCATGATGGAAATGCAGAAGCGGCAGCGCGTTGAGA
CCGCCGCCCGTTTCCAAAAGCACTTGGAACGTGTGCGCGAGATCGTTAAT
ACCGCCTTCTCAGCTCTGCCGGTTCTAGATGATGACGACGATAGCGGCGG
AGCAAAGATTAAGACGGAGGTGGATCCGTTGGAGGCGAATGCGGCGGCCA
AGAATGATCCCAGTTACCAGCACGATCGCATGTTGTGCAAGCTTGTGGAC
GCTATCGAGTAAGCTGAGTTGGCAAAAGACTGGACATCGACGCTGGAAAT
AGTGTCAATCATTGTGAATGGCTTGGAAAAAAGAGCTCCTCATATTTATA
ACTCCTTTTAGTATAAGAAATAAAACCCCAATTGTGGGATGAGAATCTTG
CAAAAAAAAAAAAAAAAAAAAAAA

IP02353.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-RA 1090 MED7-RA 82..983 1..902 4510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6585586..6586059 901..428 2370 100 Minus
chr3R 27901430 chr3R 6586119..6586547 429..1 2145 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10760070..10760544 902..428 2375 100 Minus
3R 32079331 3R 10760604..10761032 429..1 2145 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10500901..10501375 902..428 2375 100 Minus
3R 31820162 3R 10501435..10501863 429..1 2145 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:57:58 has no hits.

IP02353.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:58:42 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6585586..6586057 430..901 100 <- Minus
chr3R 6586119..6586547 1..429 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:26 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 100..762 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 100..762 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:02:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 100..762 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 100..762 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:35:12 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 100..762 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:30:00 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..678 100..777 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..901 1..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..901 1..901 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..678 100..777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:12 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..901 1..901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:42 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10760071..10760542 430..901 100 <- Minus
3R 10760604..10761032 1..429 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:42 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10760071..10760542 430..901 100 <- Minus
3R 10760604..10761032 1..429 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:42 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10760071..10760542 430..901 100 <- Minus
3R 10760604..10761032 1..429 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:59 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6585793..6586264 430..901 100 <- Minus
arm_3R 6586326..6586754 1..429 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:33 Download gff for IP02353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10500902..10501373 430..901 100 <- Minus
3R 10501435..10501863 1..429 100   Minus

IP02353.hyp Sequence

Translation from 99 to 761

> IP02353.hyp
MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGI
QYNNDEMIRSLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLIL
NPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVE
TAARFQKHLERVREIVNTAFSALPVLDDDDDSGGAKIKTEVDPLEANAAA
KNDPSYQHDRMLCKLVDAIE*

IP02353.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-PA 220 CG31390-PA 1..220 1..220 1140 100 Plus

IP02353.pep Sequence

Translation from 99 to 761

> IP02353.pep
MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGI
QYNNDEMIRSLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLIL
NPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVE
TAARFQKHLERVREIVNTAFSALPVLDDDDDSGGAKIKTEVDPLEANAAA
KNDPSYQHDRMLCKLVDAIE*

IP02353.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17438-PA 220 GF17438-PA 1..220 1..220 1044 95.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17268-PA 220 GG17268-PA 1..220 1..220 1145 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17355-PA 220 GH17355-PA 1..220 1..220 998 91.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-PA 220 CG31390-PA 1..220 1..220 1140 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23892-PA 220 GI23892-PA 1..220 1..220 1002 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12622-PA 220 GL12622-PA 1..220 1..220 1082 91.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16225-PA 220 GA16225-PA 1..220 1..220 1082 91.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26153-PA 220 GM26153-PA 1..220 1..220 1154 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20706-PA 220 GD20706-PA 1..220 1..220 1141 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23985-PA 220 GJ23985-PA 1..220 1..220 995 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13907-PA 219 GK13907-PA 1..219 1..220 979 90 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24670-PA 220 GE24670-PA 1..220 1..220 1148 98.6 Plus