Clone IP02368 Report

Search the DGRC for IP02368

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:23
Well:68
Vector:pOT2
Associated Gene/TranscriptTotC-RA
Protein status:IP02368.pep: gold
Preliminary Size:538
Sequenced Size:537

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31508 2005-01-01 Successful iPCR screen
TotC 2008-04-29 Release 5.5 accounting
TotC 2008-08-15 Release 5.9 accounting
TotC 2008-12-18 5.12 accounting

Clone Sequence Records

IP02368.complete Sequence

537 bp (537 high quality bases) assembled on 2005-03-01

GenBank Submission: BT023305

> IP02368.complete
CAGTGCTCTACTAGGGTTATTAACAAAATGAATGCCTCCATTTCTCTACT
ATGCCTTGCCCTGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACG
AGGAAAGGGAATCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCC
AACGACGCCGAATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTT
TAGGCGCCTGACTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAA
GATCCATTCAGGAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGT
CAGGGGGGGCGAAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGC
ACAAGGCCTTGCAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCA
GGCTCTTTACTGGATAATCACCATTCAGGACTAAGGGATTTTGAGAAACA
TTAGATAAACATGTTGTAAGCTCAAGTCCAAATAAAATATTCCAGTTTGA
GAAGATGATTCTTAAAAAAAAAAAAAAAAAAAAAAAA

IP02368.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 683 TotC-RA 136..652 1..517 2585 100 Plus
TotA.a 829 TotA.a 330..449 262..381 240 80 Plus
TotA.a 829 TotA.a 92..274 24..206 240 75.4 Plus
TotA-RA 829 TotA-RA 330..449 262..381 240 80 Plus
TotA-RA 829 TotA-RA 92..274 24..206 240 75.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16696997..16697459 51..513 2315 100 Plus
chr3R 27901430 chr3R 16695066..16695395 52..381 390 74.5 Plus
chr3R 27901430 chr3R 16696884..16696933 1..50 250 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873584 51..517 2335 100 Plus
3R 32079331 3R 20871187..20871516 52..381 390 74.5 Plus
3R 32079331 3R 20873005..20873054 1..50 250 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20613949..20614415 51..517 2335 100 Plus
3R 31820162 3R 20613836..20613885 1..50 250 100 Plus
3R 31820162 3R 20612228..20612347 262..381 240 80 Plus
3R 31820162 3R 20612018..20612172 52..206 220 76.1 Plus
Blast to na_te.dros performed on 2019-03-15 20:39:08 has no hits.

IP02368.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:39:55 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16696884..16696933 1..50 100 -> Plus
chr3R 16696997..16697459 51..513 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:28 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 28..417 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:27:00 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 28..417 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:09:51 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 28..417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:11:00 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 28..417 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:38 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 28..417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:30:02 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 18..530 1..513 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:27:00 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 18..530 1..513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:09:51 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 18..530 1..513 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:11:00 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 18..530 1..513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:38 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 18..530 1..513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:55 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873005..20873054 1..50 100 -> Plus
3R 20873118..20873580 51..513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:55 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873005..20873054 1..50 100 -> Plus
3R 20873118..20873580 51..513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:55 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873005..20873054 1..50 100 -> Plus
3R 20873118..20873580 51..513 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:09:51 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698727..16698776 1..50 100 -> Plus
arm_3R 16698840..16699302 51..513 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:34 Download gff for IP02368.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20613949..20614411 51..513 100   Plus
3R 20613836..20613885 1..50 100 -> Plus

IP02368.hyp Sequence

Translation from 0 to 416

> IP02368.hyp
QCSTRVINKMNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTS
NDAESKINRTQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPS
QGGRKTKYVGKILSPVAQGLAVGFFEELGGSLSRLFTG*

IP02368.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-PA 129 CG31508-PA 1..129 10..138 640 100 Plus
TotA-PA 129 CG31509-PA 1..129 10..138 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 10..137 336 53.1 Plus

IP02368.pep Sequence

Translation from 27 to 416

> IP02368.pep
MNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTSNDAESKINR
TQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPSQGGRKTKYV
GKILSPVAQGLAVGFFEELGGSLSRLFTG*

IP02368.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24221-PA 129 GG24221-PA 1..129 1..129 469 65.1 Plus
Dere\GG24210-PA 129 GG24210-PA 1..129 1..129 460 63.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-PA 129 CG31508-PA 1..129 1..129 640 100 Plus
TotA-PA 129 CG31509-PA 1..129 1..129 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 1..128 336 53.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16288-PB 154 GA16288-PB 35..149 21..129 226 43.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23144-PA 129 GM23144-PA 1..129 1..129 613 91.5 Plus
Dsec\GM23143-PA 129 GM23143-PA 1..129 1..129 483 68.2 Plus
Dsec\GM23142-PA 129 GM23142-PA 1..129 1..129 483 68.2 Plus
Dsec\GM23145-PA 139 GM23145-PA 1..127 1..128 371 55.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19383-PA 129 GD19383-PA 1..129 1..129 613 91.5 Plus
Dsim\GD19381-PA 129 GD19381-PA 1..129 1..129 478 66.7 Plus
Dsim\GD19382-PA 129 GD19382-PA 1..129 1..129 473 65.9 Plus
Dsim\GD19384-PA 139 GD19384-PA 1..127 1..128 368 54.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25694-PA 129 GE25694-PA 1..129 1..129 484 67.4 Plus
Dyak\GE25695-PA 139 GE25695-PA 1..129 1..129 393 53.5 Plus
Dyak\GE18068-PA 140 GE18068-PA 1..109 1..109 332 54.1 Plus