Clone IP02370 Report

Search the DGRC for IP02370

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:23
Well:70
Vector:pOT2
Associated Gene/TranscriptObp83ef-RA
Protein status:IP02370.pep: gold
Preliminary Size:738
Sequenced Size:864

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31557 2005-01-01 Successful iPCR screen
Obp83ef 2008-04-29 Release 5.5 accounting
Obp83ef 2008-08-15 Release 5.9 accounting
Obp83ef 2008-12-18 5.12 accounting

Clone Sequence Records

IP02370.complete Sequence

864 bp (864 high quality bases) assembled on 2005-03-01

GenBank Submission: BT023300

> IP02370.complete
CCGCAGAGAGATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGTTCCTGA
TCTGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACTCTGGAA
AAGTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGATCTTCG
AAAGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTTGCCTGA
TGCGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAAAACAAG
TGGAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTATAACTA
CTGCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCTTCGCCT
ATCGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGCACCAGC
CTGAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAACGTGGA
GCTGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCTGCCTCT
TTCAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGAAACTGG
CGGCTGGAAAACTGGAAGCAGGCGTTTGGGCCTTCCGGAAATGAGGATCA
GTCTTCTGGCGCTGACTACAGTGGCTGTCGACTAAGTGGGACTCAGCGGG
AGGTGGCGCTAAGCAAGTGCTCGTGGATGTACCATGAGTACAAATGCTGG
GAGCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCAGTAGTA
TTAAATTAATGGGACACTTGTCAATGTCAAAAATTAATAAGCACATTGTA
AGATCTATATATTTCAAAATTCGGAAATATTATCTAGACAAATGAAAAAA
AAAAAAAAAAAAAA

IP02370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83ef-RA 1024 Obp83ef-RA 48..894 1..847 4235 100 Plus
Obp83cd-RA 1080 Obp83cd-RA 993..1080 847..760 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1935323..1936108 844..59 3915 99.9 Minus
chr3R 27901430 chr3R 1936597..1936658 62..1 310 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:34:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6109680..6110468 847..59 3945 100 Minus
3R 32079331 3R 6110957..6111018 62..1 310 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5850511..5851299 847..59 3945 100 Minus
3R 31820162 3R 5851788..5851849 62..1 310 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:48:16 has no hits.

IP02370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:49:11 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1935323..1936105 62..844 99 <- Minus
chr3R 1936598..1936658 1..61 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:17:29 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..738 11..748 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:42 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..738 11..748 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:54:07 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..738 11..748 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:47 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..738 11..748 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:51:22 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..738 11..748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:29:40 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..844 1..844 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:41 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..844 1..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:07 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 17..860 1..844 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:47 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 1..844 1..844 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:51:22 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83ef-RA 17..860 1..844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:11 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6109683..6110465 62..844 100 <- Minus
3R 6110958..6111018 1..61 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:11 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6109683..6110465 62..844 100 <- Minus
3R 6110958..6111018 1..61 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:11 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6109683..6110465 62..844 100 <- Minus
3R 6110958..6111018 1..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:07 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1936680..1936740 1..61 100   Minus
arm_3R 1935405..1936187 62..844 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:47:16 Download gff for IP02370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5850514..5851296 62..844 100 <- Minus
3R 5851789..5851849 1..61 100   Minus

IP02370.hyp Sequence

Translation from 0 to 747

> IP02370.hyp
RREMSSPRAVLVSLFLICSQALADLSGDAQTLEKCLRQLSSPESIAGDLR
KLERYSSWTREEVPCLMRCLAREKGWFDVEENKWRLKQLTEDLGADVYNY
CRFELRRMGSDGCSFAYRGLRCLKQAEMHAGTSLSTLLQCSRQLNATNVE
LLQYSKLKSKEPIPCLFQCFADAMGFYDPDGNWRLENWKQAFGPSGNEDQ
SSGADYSGCRLSGTQREVALSKCSWMYHEYKCWERVNGNKLVEDNEEQ*

IP02370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83ef-PA 245 CG31557-PA 1..245 4..248 1322 100 Plus
Obp83cd-PA 242 CG15582-PA 2..238 3..233 202 24.1 Plus

IP02370.pep Sequence

Translation from 10 to 747

> IP02370.pep
MSSPRAVLVSLFLICSQALADLSGDAQTLEKCLRQLSSPESIAGDLRKLE
RYSSWTREEVPCLMRCLAREKGWFDVEENKWRLKQLTEDLGADVYNYCRF
ELRRMGSDGCSFAYRGLRCLKQAEMHAGTSLSTLLQCSRQLNATNVELLQ
YSKLKSKEPIPCLFQCFADAMGFYDPDGNWRLENWKQAFGPSGNEDQSSG
ADYSGCRLSGTQREVALSKCSWMYHEYKCWERVNGNKLVEDNEEQ*

IP02370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18628-PA 247 GF18628-PA 17..245 17..244 938 75.5 Plus
Dana\GF16368-PA 246 GF16368-PA 17..245 17..239 178 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10589-PA 247 GG10589-PA 1..242 1..243 1133 88.1 Plus
Dere\GG13108-PA 242 GG13108-PA 1..238 1..230 222 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14286-PA 226 GH14286-PA 3..219 20..236 821 69.1 Plus
Dgri\GH14012-PA 244 GH14012-PA 6..239 7..230 214 28.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83ef-PA 245 CG31557-PA 1..245 1..245 1322 100 Plus
Obp83cd-PA 242 CG15582-PA 3..238 1..230 200 24.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23180-PA 237 GI23180-PA 7..230 8..236 848 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23483-PA 254 GL23483-PA 24..252 18..244 879 70.7 Plus
Dper\GL24045-PA 242 GL24045-PA 11..238 12..230 184 22.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp83ef-PA 248 GA16321-PA 1..246 1..244 900 67.9 Plus
Dpse\Obp83cd-PA 242 GA13828-PA 8..238 8..230 183 23 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10568-PA 243 GM10568-PA 1..243 1..243 1245 96.3 Plus
Dsec\GM10854-PA 242 GM10854-PA 13..238 11..230 180 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Obp83ef-PA 243 GD19560-PA 1..243 1..243 1250 96.3 Plus
Dsim\Obp83cd-PA 242 GD19836-PA 1..238 1..230 188 23.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Obp83ef-PA 223 GJ14494-PA 1..216 18..236 820 68 Plus
Dvir\Obp83cd-PA 239 GJ14238-PA 2..235 5..230 225 27.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18978-PA 231 GK18978-PA 5..227 20..244 851 69.3 Plus
Dwil\GK13025-PA 207 GK13025-PA 11..207 45..234 160 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24116-PA 246 GE24116-PA 1..245 1..245 1189 89.8 Plus
Dyak\GE10179-PA 242 GE10179-PA 1..238 1..230 194 23.8 Plus